Wall clock time and date at job start Tue Mar 31 2020 14:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99606 * 2 1 4 4 C 1.38752 * 120.05595 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94035 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05947 * 359.97168 * 5 4 3 7 7 C 1.50694 * 119.94309 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47536 * 259.99924 * 7 6 5 9 9 C 1.34770 * 120.00270 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99915 * 0.02562 * 9 8 7 11 11 C 1.47887 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.39921 * 120.02523 * 359.72653 * 11 9 8 13 13 C 1.38330 * 120.35725 * 179.78634 * 12 11 9 14 14 C 1.37749 * 120.41148 * 0.46645 * 13 12 11 15 15 C 1.40754 * 120.03967 * 359.79568 * 14 13 12 16 16 C 1.41439 * 120.17718 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99758 * 334.92211 * 16 15 14 18 18 C 1.39935 * 120.00134 * 154.92185 * 16 15 14 19 19 N 1.30823 * 120.00192 * 342.58785 * 18 16 15 20 20 Si 1.86801 * 120.00033 * 162.58776 * 18 16 15 21 21 H 1.48502 * 109.47150 * 60.00215 * 20 18 16 22 22 H 1.48497 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47226 * 300.00157 * 20 18 16 24 24 C 1.38994 * 120.02634 * 180.02562 * 11 9 8 25 25 C 1.38249 * 120.11132 * 0.05186 * 6 5 4 26 26 C 1.50690 * 119.97302 * 179.97438 * 25 6 5 27 27 C 1.38170 * 120.05145 * 359.67037 * 25 6 5 28 28 H 1.08995 * 109.47135 * 59.99952 * 1 2 3 29 29 H 1.09008 * 109.46757 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47344 * 299.99621 * 1 2 3 31 31 H 1.07997 * 120.03184 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.96474 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47450 * 20.00890 * 7 6 5 34 34 H 1.09003 * 109.46763 * 140.00229 * 7 6 5 35 35 H 0.97001 * 119.99452 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.82000 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.79233 * 180.24039 * 13 12 11 38 38 H 1.08000 * 119.98156 * 179.76461 * 14 13 12 39 39 H 0.96997 * 120.00344 * 179.97438 * 19 18 16 40 40 H 1.08009 * 120.20054 * 359.95913 * 24 11 9 41 41 H 1.09001 * 109.47323 * 89.99513 * 26 25 6 42 42 H 1.09002 * 109.47429 * 209.99326 * 26 25 6 43 43 H 1.08999 * 109.47434 * 329.99848 * 26 25 6 44 44 H 1.08002 * 120.02539 * 180.29533 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 7 4.4207 5.3453 -1.3608 9 6 5.0597 6.5068 -1.6034 10 8 5.2756 7.2832 -0.6935 11 6 5.4983 6.8367 -2.9767 12 6 5.2551 5.9407 -4.0235 13 6 5.6584 6.2442 -5.3114 14 6 6.3123 7.4272 -5.5768 15 6 6.5706 8.3385 -4.5356 16 6 7.2422 9.5538 -4.8047 17 1 7.9008 9.6294 -5.6574 18 6 7.0536 10.6580 -3.9661 19 7 6.0281 10.6956 -3.1547 20 14 8.2660 12.0786 -4.0054 21 1 8.2974 12.6651 -5.3693 22 1 7.8443 13.1163 -3.0305 23 1 9.6198 11.5839 -3.6480 24 6 6.1578 8.0342 -3.2274 25 6 4.0559 2.5172 -0.0015 26 6 5.5606 2.5984 -0.0026 27 6 3.4310 1.2849 0.0048 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2127 2.3203 0.0014 32 1 1.3337 4.5114 0.0000 33 1 3.2905 5.7807 0.3515 34 1 4.8524 4.9849 0.6598 35 1 4.2481 4.7258 -2.0870 36 1 4.7464 5.0088 -3.8256 37 1 5.4626 5.5478 -6.1132 38 1 6.6275 7.6555 -6.5843 39 1 5.8975 11.4609 -2.5732 40 1 6.3513 8.7269 -2.4216 41 1 5.9242 2.6176 1.0248 42 1 5.9710 1.7294 -0.5170 43 1 5.8752 3.5068 -0.5163 44 1 4.0206 0.3800 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531732195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:31 Heat of formation + Delta-G solvation = -38.970466 kcal Electronic energy + Delta-G solvation = -26050.555984 eV Core-core repulsion = 22318.343194 eV Total energy + Delta-G solvation = -3732.212790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52545 -39.23367 -38.09812 -36.93572 -34.34451 -33.69202 -32.69289 -31.21657 -29.95416 -29.42054 -28.22467 -26.78228 -25.69762 -25.07183 -22.55410 -22.09038 -20.99534 -20.66887 -19.52643 -17.97815 -17.78522 -16.73910 -16.40412 -16.03387 -15.51235 -15.32471 -14.91402 -14.78201 -14.55107 -14.18024 -13.86748 -13.81870 -13.46392 -13.43442 -13.16850 -12.63588 -12.48517 -12.46924 -12.40961 -12.17531 -12.09475 -11.63798 -11.41661 -11.14688 -11.12847 -11.07507 -10.98581 -10.73218 -10.49709 -10.02613 -9.68287 -9.20330 -9.08824 -8.97308 -8.64879 -8.29452 -7.61710 -7.50840 -6.78802 -4.40589 1.10945 1.17462 2.22355 2.83152 2.98024 3.08207 3.09872 3.17420 3.39058 3.88001 3.93080 3.98753 4.54206 4.60204 4.65318 4.71601 4.78528 4.82067 5.01677 5.12195 5.16572 5.21200 5.51071 5.55426 5.60026 5.64194 5.67283 5.81066 5.95577 5.96591 6.10222 6.13273 6.20850 6.29099 6.49714 6.56741 6.72825 6.86074 6.99818 7.02894 7.13644 7.22281 7.39219 7.71350 7.77284 7.93606 8.11304 8.20433 8.51379 8.81206 8.84393 8.96529 10.16072 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.002407 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.469878 B =11629.517547 C =12002.393769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.133 3.867 4 C -0.216 4.216 5 C -0.056 4.056 6 C -0.140 4.140 7 C 0.166 3.834 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.546 6.546 11 C -0.127 4.127 12 C -0.217 4.217 13 C -0.098 4.098 14 C -0.211 4.211 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.784 5.784 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.092 4.092 25 C -0.025 4.025 26 C -0.125 4.125 27 C -0.156 4.156 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -16.759 6.759 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.235 4.235 5 C -0.075 4.075 6 C -0.141 4.141 7 C 0.043 3.957 8 N -0.387 5.387 9 C 0.354 3.646 10 O -0.424 6.424 11 C -0.131 4.131 12 C -0.237 4.237 13 C -0.116 4.116 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.408 5.408 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.112 4.112 25 C -0.026 4.026 26 C -0.182 4.182 27 C -0.174 4.174 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.514 -16.216 7.614 19.835 hybrid contribution -0.153 0.417 -0.366 0.575 sum -8.667 -15.799 7.248 19.423 Atomic orbital electron populations 1.23058 0.78373 1.03880 1.01468 1.86062 1.21417 1.27068 1.88691 1.19028 0.92299 0.84076 0.95864 1.21187 0.99985 0.92227 1.10115 1.20904 0.93755 0.97261 0.95547 1.19755 0.93536 0.94590 1.06196 1.20001 0.98555 0.91865 0.85278 1.46052 1.61106 1.21920 1.09579 1.18866 0.76272 0.79920 0.89527 1.90699 1.56263 1.48998 1.46482 1.19465 1.05179 0.97699 0.90725 1.20346 1.10580 0.99346 0.93405 1.20433 0.99380 0.96640 0.95179 1.21101 1.07157 0.97152 0.97713 1.17600 0.89931 0.92408 0.90461 1.19548 1.24078 0.94796 1.10538 0.90132 1.25959 0.94785 1.00090 0.93751 1.69777 1.23342 1.30089 1.17641 0.86325 0.81404 0.79782 0.79007 1.18990 1.20242 1.18718 1.21633 0.97992 0.93923 0.97645 1.19633 0.96276 0.91433 0.95222 1.20949 0.90373 1.03906 1.02929 1.20263 0.91234 0.98083 1.07869 0.92546 0.88287 0.92629 0.85449 0.85391 0.91195 0.90900 0.76461 0.89276 0.88941 0.88640 0.90396 0.84866 0.90618 0.91140 0.90138 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.22 10.50 -19.42 -0.20 -3.43 16 3 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 4 C -0.22 -2.20 9.04 -39.43 -0.36 -2.55 16 5 C -0.06 -0.62 9.66 -39.60 -0.38 -1.00 16 6 C -0.14 -1.69 5.25 -104.60 -0.55 -2.24 16 7 C 0.17 2.37 4.93 -5.19 -0.03 2.34 16 8 N -0.73 -12.14 4.83 -62.42 -0.30 -12.45 16 9 C 0.56 12.24 7.77 -12.31 -0.10 12.15 16 10 O -0.55 -13.61 16.33 5.32 0.09 -13.52 16 11 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 12 C -0.22 -4.56 9.55 -38.92 -0.37 -4.94 16 13 C -0.10 -2.10 10.01 -39.73 -0.40 -2.49 16 14 C -0.21 -5.03 9.78 -38.81 -0.38 -5.40 16 15 C 0.10 2.61 5.57 -106.87 -0.59 2.01 16 16 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 17 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 18 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 19 N -0.78 -20.83 10.97 55.55 0.61 -20.22 16 20 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.09 -2.45 8.23 -38.45 -0.32 -2.77 16 25 C -0.03 -0.28 5.88 -104.65 -0.62 -0.90 16 26 C -0.13 -1.30 9.26 36.00 0.33 -0.97 16 27 C -0.16 -1.71 9.64 -39.43 -0.38 -2.09 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 31 H 0.13 1.01 6.30 -52.49 -0.33 0.67 16 32 H 0.13 1.26 8.04 -52.48 -0.42 0.84 16 33 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 34 H 0.07 1.05 7.28 -51.93 -0.38 0.68 16 35 H 0.40 6.02 6.48 -40.82 -0.26 5.76 16 36 H 0.09 1.58 6.38 -52.49 -0.33 1.24 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 40 H 0.13 3.84 5.77 -52.48 -0.30 3.54 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.08 0.98 6.33 -51.93 -0.33 0.65 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -30.55 369.31 -9.38 -39.93 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.66 Total: 11.14 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -4.45 Total: -20.81 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.31 Total: -32.66 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.12 Total: -16.95 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.55 -9.38 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531732195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.962 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds