Wall clock time and date at job start Tue Mar 31 2020 14:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99606 * 2 1 4 4 C 1.38752 * 120.05595 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94035 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05947 * 359.97168 * 5 4 3 7 7 C 1.50694 * 119.94309 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47536 * 259.99924 * 7 6 5 9 9 C 1.34770 * 120.00270 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99915 * 0.02562 * 9 8 7 11 11 C 1.47887 * 120.00019 * 180.02562 * 9 8 7 12 12 C 1.39921 * 120.02523 * 359.72653 * 11 9 8 13 13 C 1.38330 * 120.35725 * 179.78634 * 12 11 9 14 14 C 1.37749 * 120.41148 * 0.46645 * 13 12 11 15 15 C 1.40754 * 120.03967 * 359.79568 * 14 13 12 16 16 C 1.41439 * 120.17718 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99758 * 334.92211 * 16 15 14 18 18 C 1.39935 * 120.00134 * 154.92185 * 16 15 14 19 19 N 1.30823 * 120.00192 * 342.58785 * 18 16 15 20 20 Si 1.86801 * 120.00033 * 162.58776 * 18 16 15 21 21 H 1.48502 * 109.47150 * 60.00215 * 20 18 16 22 22 H 1.48497 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47226 * 300.00157 * 20 18 16 24 24 C 1.38994 * 120.02634 * 180.02562 * 11 9 8 25 25 C 1.38249 * 120.11132 * 0.05186 * 6 5 4 26 26 C 1.50690 * 119.97302 * 179.97438 * 25 6 5 27 27 C 1.38170 * 120.05145 * 359.67037 * 25 6 5 28 28 H 1.08995 * 109.47135 * 59.99952 * 1 2 3 29 29 H 1.09008 * 109.46757 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47344 * 299.99621 * 1 2 3 31 31 H 1.07997 * 120.03184 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.96474 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47450 * 20.00890 * 7 6 5 34 34 H 1.09003 * 109.46763 * 140.00229 * 7 6 5 35 35 H 0.97001 * 119.99452 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.82000 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.79233 * 180.24039 * 13 12 11 38 38 H 1.08000 * 119.98156 * 179.76461 * 14 13 12 39 39 H 0.96997 * 120.00344 * 179.97438 * 19 18 16 40 40 H 1.08009 * 120.20054 * 359.95913 * 24 11 9 41 41 H 1.09001 * 109.47323 * 89.99513 * 26 25 6 42 42 H 1.09002 * 109.47429 * 209.99326 * 26 25 6 43 43 H 1.08999 * 109.47434 * 329.99848 * 26 25 6 44 44 H 1.08002 * 120.02539 * 180.29533 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 7 4.4207 5.3453 -1.3608 9 6 5.0597 6.5068 -1.6034 10 8 5.2756 7.2832 -0.6935 11 6 5.4983 6.8367 -2.9767 12 6 5.2551 5.9407 -4.0235 13 6 5.6584 6.2442 -5.3114 14 6 6.3123 7.4272 -5.5768 15 6 6.5706 8.3385 -4.5356 16 6 7.2422 9.5538 -4.8047 17 1 7.9008 9.6294 -5.6574 18 6 7.0536 10.6580 -3.9661 19 7 6.0281 10.6956 -3.1547 20 14 8.2660 12.0786 -4.0054 21 1 8.2974 12.6651 -5.3693 22 1 7.8443 13.1163 -3.0305 23 1 9.6198 11.5839 -3.6480 24 6 6.1578 8.0342 -3.2274 25 6 4.0559 2.5172 -0.0015 26 6 5.5606 2.5984 -0.0026 27 6 3.4310 1.2849 0.0048 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2127 2.3203 0.0014 32 1 1.3337 4.5114 0.0000 33 1 3.2905 5.7807 0.3515 34 1 4.8524 4.9849 0.6598 35 1 4.2481 4.7258 -2.0870 36 1 4.7464 5.0088 -3.8256 37 1 5.4626 5.5478 -6.1132 38 1 6.6275 7.6555 -6.5843 39 1 5.8975 11.4609 -2.5732 40 1 6.3513 8.7269 -2.4216 41 1 5.9242 2.6176 1.0248 42 1 5.9710 1.7294 -0.5170 43 1 5.8752 3.5068 -0.5163 44 1 4.0206 0.3800 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531732195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:30 Heat of formation + Delta-G solvation = -55.945193 kcal Electronic energy + Delta-G solvation = -26051.292063 eV Core-core repulsion = 22318.343194 eV Total energy + Delta-G solvation = -3732.948869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41772 -40.75006 -39.13699 -38.61728 -35.82230 -35.47438 -33.52624 -32.56628 -31.45210 -31.22452 -29.04295 -27.47203 -27.29286 -26.48175 -23.99001 -23.17537 -22.76566 -21.62079 -21.20595 -19.54804 -18.69890 -18.07281 -17.54981 -17.17911 -16.84827 -16.63609 -16.48888 -16.06486 -15.92717 -15.32489 -15.13807 -15.05280 -14.73758 -14.52223 -14.29344 -14.23621 -14.21488 -13.65175 -13.41934 -13.10800 -13.08898 -12.93360 -12.79912 -12.74745 -12.52343 -12.34218 -12.19559 -11.92914 -11.84027 -11.75669 -11.50345 -11.06125 -10.82692 -10.15732 -9.78819 -9.46046 -9.37874 -9.16343 -8.65553 -6.37485 0.25338 0.33688 0.38911 1.01900 1.36833 1.48401 1.51227 2.10908 2.20082 2.25312 2.34379 2.79295 2.82099 3.65844 3.70347 3.77463 3.89997 4.06136 4.11287 4.27620 4.34904 4.40749 4.42047 4.42978 4.59627 4.61220 4.67123 4.75356 4.76094 4.82352 4.91920 5.00307 5.09488 5.13704 5.19756 5.31400 5.31693 5.36078 5.42220 5.52933 5.63850 5.74286 5.87221 5.93406 6.05912 6.29298 6.41473 6.51530 6.68663 6.88651 6.95273 7.30761 8.31247 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.002407 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.469878 B =11629.517547 C =12002.393769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.059 4.059 6 C -0.153 4.153 7 C 0.170 3.830 8 N -0.707 5.707 9 C 0.561 3.439 10 O -0.588 6.588 11 C -0.137 4.137 12 C -0.197 4.197 13 C -0.096 4.096 14 C -0.216 4.216 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.252 1.252 22 H -0.272 1.272 23 H -0.260 1.260 24 C -0.130 4.130 25 C -0.027 4.027 26 C -0.124 4.124 27 C -0.165 4.165 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 -19.346 6.048 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.085 3.915 4 C -0.234 4.234 5 C -0.078 4.078 6 C -0.154 4.154 7 C 0.047 3.953 8 N -0.359 5.359 9 C 0.351 3.649 10 O -0.469 6.469 11 C -0.140 4.140 12 C -0.217 4.217 13 C -0.114 4.114 14 C -0.236 4.236 15 C 0.064 3.936 16 C -0.527 4.527 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.803 3.197 21 H -0.176 1.176 22 H -0.197 1.197 23 H -0.185 1.185 24 C -0.151 4.151 25 C -0.027 4.027 26 C -0.180 4.180 27 C -0.183 4.183 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.248 0.752 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.737 -18.866 6.883 22.318 hybrid contribution 0.057 0.923 -0.144 0.936 sum -9.680 -17.943 6.740 21.472 Atomic orbital electron populations 1.23361 0.76381 1.05640 1.02314 1.86053 1.23520 1.26686 1.88404 1.19206 0.92511 0.84704 0.95123 1.21408 1.01207 0.91497 1.09267 1.21058 0.93379 0.98180 0.95156 1.19556 0.94040 0.93351 1.08420 1.20046 0.98466 0.93264 0.83528 1.45854 1.58918 1.20030 1.11142 1.18720 0.76679 0.80945 0.88509 1.90675 1.58179 1.50728 1.47358 1.19762 1.04429 0.97232 0.92603 1.20816 1.08492 0.99822 0.92526 1.20910 0.97653 0.96290 0.96514 1.21404 1.06938 0.97584 0.97682 1.17955 0.90917 0.93521 0.91171 1.19832 1.25408 0.95699 1.11734 0.89774 1.26857 0.96124 1.02667 0.92947 1.69880 1.25292 1.31090 1.18874 0.85241 0.78599 0.76303 0.79545 1.17627 1.19696 1.18478 1.21443 1.01204 0.95279 0.97131 1.19698 0.96576 0.91412 0.95055 1.20942 0.90070 1.03558 1.03426 1.20423 0.91733 0.98228 1.07915 0.91766 0.86259 0.91634 0.83158 0.84511 0.91681 0.91318 0.75232 0.85018 0.84475 0.87339 0.90300 0.88286 0.89841 0.89613 0.92073 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.84 10.50 -92.41 -0.97 -6.81 16 3 C 0.13 2.52 6.69 22.51 0.15 2.67 16 4 C -0.22 -3.78 9.04 22.37 0.20 -3.58 16 5 C -0.06 -1.18 9.66 22.25 0.22 -0.97 16 6 C -0.15 -3.47 5.25 -19.85 -0.10 -3.58 16 7 C 0.17 4.75 4.93 85.63 0.42 5.17 16 8 N -0.71 -22.85 4.83 -469.67 -2.27 -25.12 16 9 C 0.56 24.80 7.77 86.80 0.67 25.47 16 10 O -0.59 -30.64 16.33 -3.88 -0.06 -30.70 16 11 C -0.14 -6.53 5.87 -20.13 -0.12 -6.64 16 12 C -0.20 -7.82 9.55 22.70 0.22 -7.60 16 13 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 14 C -0.22 -10.16 9.78 22.77 0.22 -9.94 16 15 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 16 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 17 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.83 -46.43 10.97 21.82 0.24 -46.19 16 20 Si 0.98 39.87 29.59 68.60 2.03 41.90 16 21 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 C -0.13 -7.27 8.23 23.01 0.19 -7.08 16 25 C -0.03 -0.56 5.88 -19.88 -0.12 -0.68 16 26 C -0.12 -2.40 9.26 71.23 0.66 -1.74 16 27 C -0.16 -3.25 9.64 22.37 0.22 -3.03 16 28 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.49 7.66 -2.38 -0.02 0.47 16 31 H 0.15 1.87 6.30 -2.91 -0.02 1.85 16 32 H 0.14 2.43 8.04 -2.91 -0.02 2.41 16 33 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 34 H 0.07 2.00 7.28 -2.39 -0.02 1.99 16 35 H 0.41 11.41 6.48 -92.71 -0.60 10.81 16 36 H 0.13 4.07 6.38 -2.91 -0.02 4.05 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 40 H 0.10 6.16 5.77 -2.91 -0.02 6.15 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 43 H 0.06 1.42 6.33 -2.39 -0.02 1.41 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.28 369.31 4.10 -66.19 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.43 Total: 36.13 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.70 Total: -35.40 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.03 Total: -71.31 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.03 Total: -37.51 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -70.28 4.10 -66.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531732195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.241 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds