Wall clock time and date at job start Tue Mar 31 2020 14:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99680 * 2 1 4 4 C 1.38753 * 120.05833 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94543 * 180.02562 * 4 3 2 6 6 C 1.38279 * 120.05671 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94598 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47108 * 260.00057 * 7 6 5 9 9 C 1.34771 * 119.99636 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 7 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 C 1.38247 * 120.10998 * 0.25102 * 6 5 4 26 26 C 1.50703 * 119.97347 * 179.70507 * 25 6 5 27 27 C 1.38172 * 120.05771 * 359.45532 * 25 6 5 28 28 H 1.08998 * 109.46691 * 60.00477 * 1 2 3 29 29 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47741 * 300.00102 * 1 2 3 31 31 H 1.08003 * 120.02602 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.96909 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46811 * 140.00152 * 7 6 5 34 34 H 1.08998 * 109.46864 * 19.99936 * 7 6 5 35 35 H 0.96994 * 120.00230 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 38 38 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 41 41 H 1.08994 * 109.47346 * 90.00038 * 26 25 6 42 42 H 1.09004 * 109.47532 * 210.00504 * 26 25 6 43 43 H 1.09006 * 109.46803 * 330.00319 * 26 25 6 44 44 H 1.07993 * 120.02774 * 180.24979 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 7 4.4197 5.3445 -1.3636 9 6 5.0595 6.5054 -1.6070 10 8 5.2763 7.2826 -0.6973 11 6 5.4963 6.8342 -2.9785 12 6 5.2499 5.9355 -4.0236 13 6 5.6461 6.2372 -5.2926 14 6 6.3151 7.4502 -5.5495 15 6 6.7330 7.7641 -6.8602 16 1 7.5558 8.4461 -7.0159 17 6 6.0798 7.1906 -7.9607 18 7 4.8955 6.6591 -7.8131 19 14 6.9030 7.1866 -9.6374 20 1 8.1874 6.4457 -9.5565 21 1 6.0121 6.5256 -10.6247 22 1 7.1642 8.5848 -10.0640 23 6 6.5659 8.3487 -4.4937 24 6 6.1611 8.0406 -3.2290 25 6 4.0558 2.5172 -0.0079 26 6 5.5607 2.5983 -0.0164 27 6 3.4311 1.2848 -0.0013 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 0.0005 32 1 1.3338 4.5114 0.0000 33 1 4.8531 4.9851 0.6568 34 1 3.2908 5.7808 0.3493 35 1 4.2465 4.7248 -2.0894 36 1 4.7407 5.0041 -3.8249 37 1 5.4520 5.5453 -6.0987 38 1 4.4438 6.2621 -8.5742 39 1 7.0787 9.2795 -4.6858 40 1 6.3533 8.7285 -2.4188 41 1 5.9294 2.6161 1.0092 42 1 5.9685 1.7301 -0.5341 43 1 5.8726 3.5075 -0.5304 44 1 4.0206 0.3800 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534664126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:34 Heat of formation + Delta-G solvation = -43.025715 kcal Electronic energy + Delta-G solvation = -25928.002264 eV Core-core repulsion = 22195.613625 eV Total energy + Delta-G solvation = -3732.388639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48708 -39.14235 -38.06605 -37.01927 -34.25300 -33.86264 -32.65947 -31.18863 -29.99046 -29.42935 -28.24547 -26.75405 -26.26278 -24.86445 -22.37740 -21.83691 -20.99977 -20.62669 -19.59335 -17.94161 -17.52412 -17.05334 -16.68279 -16.00660 -15.63450 -15.39229 -15.01352 -14.72503 -14.22795 -13.99466 -13.85715 -13.81048 -13.44493 -13.40768 -13.18454 -12.71610 -12.45273 -12.38700 -12.16963 -12.10206 -12.02216 -11.89836 -11.43370 -11.30817 -11.24522 -11.08745 -10.99965 -10.94779 -10.63423 -10.06090 -9.55147 -9.34232 -9.04119 -8.93966 -8.58275 -8.25459 -7.71230 -7.53557 -7.03132 -4.59796 1.14556 1.21024 2.24620 2.92586 2.94427 2.98546 3.01367 3.04520 3.44170 3.73927 3.88211 4.08926 4.55852 4.59052 4.63748 4.75324 4.81554 4.85273 5.05092 5.15286 5.19783 5.24508 5.54659 5.57065 5.59710 5.67536 5.74796 5.86005 5.99758 6.06106 6.12987 6.17587 6.24410 6.32851 6.53225 6.60210 6.77628 6.83167 6.93898 7.06715 7.14314 7.17094 7.44199 7.66464 7.80365 7.86551 8.07779 8.26339 8.40418 8.63585 8.76023 9.09020 9.88818 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.002624 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.549594 B =10668.445602 C =11941.659035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.132 3.868 4 C -0.216 4.216 5 C -0.057 4.057 6 C -0.140 4.140 7 C 0.169 3.831 8 N -0.737 5.737 9 C 0.571 3.429 10 O -0.576 6.576 11 C -0.284 4.284 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.443 4.443 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.239 4.239 24 C -0.022 4.022 25 C -0.025 4.025 26 C -0.125 4.125 27 C -0.156 4.156 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -12.451 10.053 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.235 4.235 5 C -0.075 4.075 6 C -0.141 4.141 7 C 0.045 3.955 8 N -0.391 5.391 9 C 0.366 3.634 10 O -0.458 6.458 11 C -0.288 4.288 12 C -0.081 4.081 13 C -0.197 4.197 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.259 4.259 24 C -0.041 4.041 25 C -0.026 4.026 26 C -0.181 4.181 27 C -0.174 4.174 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.146 -12.204 10.573 17.658 hybrid contribution -0.356 -0.285 -1.168 1.254 sum -7.502 -12.489 9.405 17.341 Atomic orbital electron populations 1.23053 0.78391 1.03865 1.01462 1.86062 1.21404 1.27071 1.88699 1.19025 0.92301 0.84077 0.95897 1.21184 0.99973 0.92240 1.10102 1.20890 0.93763 0.97225 0.95639 1.19775 0.93534 0.94672 1.06088 1.19948 0.98340 0.91687 0.85491 1.46005 1.61557 1.22201 1.09302 1.18607 0.75811 0.79669 0.89292 1.90635 1.58497 1.49698 1.46997 1.18889 1.17933 1.00831 0.91159 1.20476 0.97866 0.96398 0.93388 1.20971 1.05514 0.98148 0.95117 1.17784 0.87372 0.89753 0.92563 1.19816 1.14240 1.22698 0.90305 0.89755 1.26098 0.93882 0.92628 1.02080 1.69739 1.10379 1.25503 1.33862 0.86264 0.80284 0.79907 0.79834 1.18475 1.20068 1.18662 1.20713 1.11508 1.00386 0.93262 1.20363 0.93740 0.94136 0.95892 1.19633 0.96275 0.91440 0.95261 1.20948 0.90393 1.03944 1.02843 1.20266 0.91239 0.98093 1.07837 0.92531 0.88305 0.92653 0.85467 0.85444 0.91122 0.91461 0.76653 0.89388 0.86232 0.90191 0.88406 0.88109 0.90688 0.91150 0.90109 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.37 10.50 -19.42 -0.20 -3.58 16 3 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 4 C -0.22 -2.29 9.04 -39.43 -0.36 -2.64 16 5 C -0.06 -0.64 9.66 -39.61 -0.38 -1.03 16 6 C -0.14 -1.74 5.25 -104.60 -0.55 -2.29 16 7 C 0.17 2.42 4.92 -5.19 -0.03 2.39 16 8 N -0.74 -12.36 4.81 -62.49 -0.30 -12.66 16 9 C 0.57 12.07 7.76 -12.42 -0.10 11.97 16 10 O -0.58 -13.62 16.32 5.28 0.09 -13.53 16 11 C -0.28 -6.47 5.89 -104.73 -0.62 -7.08 16 12 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 13 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 14 C 0.13 3.27 5.58 -106.80 -0.60 2.68 16 15 C -0.44 -11.01 9.04 -37.74 -0.34 -11.35 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.65 16 18 N -0.77 -18.50 10.95 55.56 0.61 -17.89 16 19 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.24 -5.79 9.73 -39.27 -0.38 -6.18 16 24 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 25 C -0.03 -0.30 5.88 -104.64 -0.62 -0.92 16 26 C -0.12 -1.35 9.26 36.01 0.33 -1.01 16 27 C -0.16 -1.79 9.64 -39.43 -0.38 -2.17 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 32 H 0.13 1.29 8.03 -52.49 -0.42 0.87 16 33 H 0.07 1.02 7.29 -51.93 -0.38 0.65 16 34 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 35 H 0.40 6.26 6.46 -40.82 -0.26 6.00 16 36 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 37 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 38 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 39 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -29.12 369.00 -9.39 -38.51 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.65 Total: 12.27 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -4.46 Total: -20.92 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.31 Total: -30.55 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.12 Total: -17.11 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.12 -9.39 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534664126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.518 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds