Wall clock time and date at job start Tue Mar 31 2020 14:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99680 * 2 1 4 4 C 1.38753 * 120.05833 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94543 * 180.02562 * 4 3 2 6 6 C 1.38279 * 120.05671 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94598 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47108 * 260.00057 * 7 6 5 9 9 C 1.34771 * 119.99636 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 7 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 C 1.38247 * 120.10998 * 0.25102 * 6 5 4 26 26 C 1.50703 * 119.97347 * 179.70507 * 25 6 5 27 27 C 1.38172 * 120.05771 * 359.45532 * 25 6 5 28 28 H 1.08998 * 109.46691 * 60.00477 * 1 2 3 29 29 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47741 * 300.00102 * 1 2 3 31 31 H 1.08003 * 120.02602 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.96909 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46811 * 140.00152 * 7 6 5 34 34 H 1.08998 * 109.46864 * 19.99936 * 7 6 5 35 35 H 0.96994 * 120.00230 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 38 38 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 41 41 H 1.08994 * 109.47346 * 90.00038 * 26 25 6 42 42 H 1.09004 * 109.47532 * 210.00504 * 26 25 6 43 43 H 1.09006 * 109.46803 * 330.00319 * 26 25 6 44 44 H 1.07993 * 120.02774 * 180.24979 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 7 4.4197 5.3445 -1.3636 9 6 5.0595 6.5054 -1.6070 10 8 5.2763 7.2826 -0.6973 11 6 5.4963 6.8342 -2.9785 12 6 5.2499 5.9355 -4.0236 13 6 5.6461 6.2372 -5.2926 14 6 6.3151 7.4502 -5.5495 15 6 6.7330 7.7641 -6.8602 16 1 7.5558 8.4461 -7.0159 17 6 6.0798 7.1906 -7.9607 18 7 4.8955 6.6591 -7.8131 19 14 6.9030 7.1866 -9.6374 20 1 8.1874 6.4457 -9.5565 21 1 6.0121 6.5256 -10.6247 22 1 7.1642 8.5848 -10.0640 23 6 6.5659 8.3487 -4.4937 24 6 6.1611 8.0406 -3.2290 25 6 4.0558 2.5172 -0.0079 26 6 5.5607 2.5983 -0.0164 27 6 3.4311 1.2848 -0.0013 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 0.0005 32 1 1.3338 4.5114 0.0000 33 1 4.8531 4.9851 0.6568 34 1 3.2908 5.7808 0.3493 35 1 4.2465 4.7248 -2.0894 36 1 4.7407 5.0041 -3.8249 37 1 5.4520 5.5453 -6.0987 38 1 4.4438 6.2621 -8.5742 39 1 7.0787 9.2795 -4.6858 40 1 6.3533 8.7285 -2.4188 41 1 5.9294 2.6161 1.0092 42 1 5.9685 1.7301 -0.5341 43 1 5.8726 3.5075 -0.5304 44 1 4.0206 0.3800 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534664126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:33 Heat of formation + Delta-G solvation = -57.791156 kcal Electronic energy + Delta-G solvation = -25928.642541 eV Core-core repulsion = 22195.613625 eV Total energy + Delta-G solvation = -3733.028916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38493 -40.65639 -39.17522 -38.64178 -35.66161 -35.62606 -33.52307 -32.53600 -31.47601 -31.25956 -29.12344 -27.81305 -27.47737 -26.14740 -23.64496 -23.17450 -22.74729 -21.60845 -21.24697 -19.35695 -18.73811 -18.57008 -17.54766 -17.30454 -16.89717 -16.63939 -16.19116 -15.93885 -15.72774 -15.35738 -15.12243 -15.04373 -14.71361 -14.50825 -14.33180 -14.23645 -13.87791 -13.67436 -13.55068 -13.16897 -13.10121 -13.08692 -12.84761 -12.76112 -12.61675 -12.35850 -12.31107 -11.87831 -11.77916 -11.75801 -11.36140 -11.10906 -10.74413 -10.06418 -9.78967 -9.56424 -9.39517 -9.15777 -8.78650 -6.47378 0.26215 0.33716 0.45659 1.16050 1.39239 1.45021 1.52444 2.13254 2.18752 2.32445 2.37140 2.79898 2.86566 3.68202 3.70003 3.77756 3.90183 4.12291 4.26987 4.28167 4.32240 4.35532 4.39663 4.42318 4.46193 4.63178 4.71266 4.75062 4.76037 4.83207 4.93401 5.00050 5.03624 5.13650 5.17230 5.30805 5.31287 5.35835 5.52898 5.59921 5.64743 5.74838 5.83447 5.95668 6.00415 6.23625 6.41082 6.54755 6.71256 6.77983 6.89889 7.44755 8.16331 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.002624 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.549594 B =10668.445602 C =11941.659035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.128 3.872 4 C -0.216 4.216 5 C -0.060 4.060 6 C -0.153 4.153 7 C 0.173 3.827 8 N -0.719 5.719 9 C 0.573 3.427 10 O -0.604 6.604 11 C -0.292 4.292 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.474 4.474 16 H 0.086 0.914 17 C 0.038 3.962 18 N -0.798 5.798 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.253 4.253 24 C -0.033 4.033 25 C -0.029 4.029 26 C -0.123 4.123 27 C -0.166 4.166 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 -14.104 9.773 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.083 3.917 4 C -0.235 4.235 5 C -0.078 4.078 6 C -0.154 4.154 7 C 0.050 3.950 8 N -0.370 5.370 9 C 0.367 3.633 10 O -0.489 6.489 11 C -0.296 4.296 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.501 4.501 16 H 0.104 0.896 17 C -0.181 4.181 18 N -0.422 5.422 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.183 1.183 23 C -0.272 4.272 24 C -0.052 4.052 25 C -0.029 4.029 26 C -0.179 4.179 27 C -0.185 4.185 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.241 0.759 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.232 -13.891 10.313 19.159 hybrid contribution -0.141 0.137 -0.975 0.995 sum -8.373 -13.754 9.338 18.613 Atomic orbital electron populations 1.23355 0.76394 1.05622 1.02302 1.86050 1.23520 1.26719 1.88442 1.19210 0.92516 0.84735 0.95262 1.21415 1.01198 0.91557 1.09292 1.21068 0.93439 0.98151 0.95186 1.19623 0.94052 0.93643 1.08087 1.20000 0.98367 0.92939 0.83700 1.45867 1.59748 1.20631 1.10793 1.18380 0.76143 0.80599 0.88227 1.90618 1.59848 1.50955 1.47470 1.19168 1.17434 1.00597 0.92402 1.20690 0.96880 0.97260 0.92358 1.21000 1.06798 0.98077 0.95849 1.18136 0.88203 0.90497 0.93369 1.20090 1.14990 1.23989 0.91009 0.89625 1.26927 0.94074 0.91635 1.05487 1.69763 1.11345 1.25539 1.35513 0.85164 0.79175 0.80025 0.74954 1.18237 1.18819 1.18250 1.20856 1.12117 1.00763 0.93480 1.20518 0.94040 0.94837 0.95790 1.19722 0.96645 0.91460 0.95109 1.20938 0.90041 1.03486 1.03461 1.20431 0.91767 0.98273 1.08021 0.91898 0.86273 0.91516 0.83174 0.84374 0.91325 0.91586 0.75876 0.86341 0.86926 0.89204 0.87756 0.87809 0.89624 0.89926 0.91993 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.34 10.50 -92.40 -0.97 -7.31 16 3 C 0.13 2.67 6.69 22.51 0.15 2.82 16 4 C -0.22 -4.07 9.04 22.37 0.20 -3.87 16 5 C -0.06 -1.25 9.66 22.25 0.21 -1.04 16 6 C -0.15 -3.61 5.25 -19.85 -0.10 -3.72 16 7 C 0.17 4.81 4.92 85.63 0.42 5.23 16 8 N -0.72 -23.49 4.81 -469.89 -2.26 -25.75 16 9 C 0.57 24.07 7.76 86.73 0.67 24.74 16 10 O -0.60 -28.65 16.32 -4.01 -0.07 -28.71 16 11 C -0.29 -13.34 5.89 -19.93 -0.12 -13.46 16 12 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 13 C -0.20 -9.84 8.63 22.47 0.19 -9.65 16 14 C 0.10 5.27 5.58 -21.28 -0.12 5.16 16 15 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 16 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 17 C 0.04 1.76 5.14 85.35 0.44 2.20 16 18 N -0.80 -38.26 10.95 21.87 0.24 -38.02 16 19 Si 0.99 34.79 29.60 68.60 2.03 36.82 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 23 C -0.25 -12.58 9.73 22.47 0.22 -12.36 16 24 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 25 C -0.03 -0.64 5.88 -19.88 -0.12 -0.76 16 26 C -0.12 -2.51 9.26 71.24 0.66 -1.85 16 27 C -0.17 -3.55 9.64 22.37 0.22 -3.33 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.56 7.66 -2.39 -0.02 0.55 16 31 H 0.15 2.04 6.30 -2.91 -0.02 2.03 16 32 H 0.14 2.53 8.03 -2.91 -0.02 2.50 16 33 H 0.07 1.96 7.29 -2.39 -0.02 1.94 16 34 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 35 H 0.40 12.19 6.46 -92.71 -0.60 11.59 16 36 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 37 H 0.11 5.68 6.16 -2.91 -0.02 5.67 16 38 H 0.30 12.67 8.29 -92.70 -0.77 11.90 16 39 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.45 8.09 -2.39 -0.02 1.44 16 43 H 0.06 1.50 6.32 -2.38 -0.02 1.49 16 44 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -62.79 369.00 4.09 -58.70 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: 0.44 Total: 40.08 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.68 Total: -35.82 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -2.02 Total: -63.77 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.04 Total: -36.02 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Total: -62.79 4.09 -58.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534664126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.908 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds