Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38291 * 119.94422 * 2 1 4 4 C 1.38120 * 120.05618 * 179.74349 * 3 2 1 5 5 C 1.38757 * 119.94314 * 0.50893 * 4 3 2 6 6 O 1.35900 * 120.05568 * 179.74221 * 5 4 3 7 7 C 1.42900 * 116.99895 * 359.72637 * 6 5 4 8 8 C 1.50696 * 109.47118 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 179.97438 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 C 1.38706 * 119.88469 * 359.46694 * 5 4 3 26 26 C 1.38163 * 119.94845 * 0.27769 * 25 5 4 27 27 C 1.50700 * 119.97381 * 180.02562 * 26 25 5 28 28 H 1.09003 * 109.47094 * 270.02480 * 1 2 3 29 29 H 1.08996 * 109.47239 * 30.02712 * 1 2 3 30 30 H 1.09000 * 109.46667 * 150.02372 * 1 2 3 31 31 H 1.08000 * 119.96729 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.02870 * 180.27435 * 4 3 2 33 33 H 1.09000 * 109.47747 * 59.99485 * 7 6 5 34 34 H 1.09004 * 109.47161 * 300.00094 * 7 6 5 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 41 41 H 1.08008 * 120.02606 * 180.30185 * 25 5 4 42 42 H 1.09000 * 109.47380 * 89.99503 * 27 26 25 43 43 H 1.09002 * 109.47619 * 210.00288 * 27 26 25 44 44 H 1.09001 * 109.47043 * 329.99838 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0054 5 6 4.2735 0.0000 0.0001 6 8 5.6325 0.0001 0.0000 7 6 6.2812 1.2733 -0.0005 8 6 7.7752 1.0759 -0.0011 9 8 8.2387 -0.0448 -0.0006 10 7 8.5961 2.1448 -0.0022 11 6 9.9706 1.9661 -0.1229 12 6 10.4797 0.7811 -0.6317 13 6 11.8462 0.6071 -0.7445 14 6 12.7215 1.6131 -0.3568 15 6 12.2477 2.7915 0.1420 16 6 10.8607 2.9942 0.2672 17 6 10.3625 4.2093 0.7824 18 1 9.4005 4.2341 1.2725 19 6 11.1151 5.3829 0.6582 20 7 10.8913 6.3917 1.4610 21 14 12.4390 5.5091 -0.6536 22 1 13.7320 5.0336 -0.0993 23 1 12.0620 4.6702 -1.8196 24 1 12.5754 6.9235 -1.0848 25 6 3.5787 -1.2005 0.0006 26 6 2.1971 -1.1978 0.0006 27 6 1.4417 -2.5018 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6559 2.1328 -0.0004 32 1 4.1171 2.1371 0.0098 33 1 5.9883 1.8308 0.8892 34 1 5.9882 1.8300 -0.8907 35 1 8.2287 3.0386 0.0813 36 1 9.8081 -0.0081 -0.9359 37 1 12.2368 -0.3197 -1.1380 38 1 13.7867 1.4616 -0.4516 39 1 12.9365 3.5680 0.4404 40 1 10.1563 6.3547 2.0930 41 1 4.1174 -2.1367 0.0014 42 1 1.2596 -2.8154 1.0296 43 1 0.4895 -2.3707 -0.5123 44 1 2.0297 -3.2628 -0.5115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559236481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = -31.359362 kcal Electronic energy + Delta-G solvation = -25951.502807 eV Core-core repulsion = 22219.620059 eV Total energy + Delta-G solvation = -3731.882747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56191 -39.70930 -38.14724 -37.19384 -34.05910 -33.80729 -32.88382 -32.23354 -30.30223 -29.86308 -28.18414 -27.00540 -26.10580 -24.76551 -22.58388 -22.24160 -21.12130 -20.34732 -19.70254 -18.31473 -18.01801 -17.26649 -16.40031 -16.29813 -15.94925 -15.47449 -14.98065 -14.62381 -14.44823 -14.29093 -14.09823 -13.95022 -13.50345 -13.38247 -13.08494 -13.04989 -12.74282 -12.61510 -12.35087 -12.23456 -12.20528 -12.10714 -11.63742 -11.45679 -11.06142 -10.95497 -10.87214 -10.83458 -10.55179 -9.92750 -9.78255 -9.53302 -9.17147 -8.97420 -8.86311 -8.17602 -7.80812 -7.43811 -7.08576 -4.61494 1.13326 1.25539 2.30621 2.65788 2.70410 3.11105 3.15435 3.32132 3.49404 3.53330 3.92234 3.93994 4.47489 4.56692 4.57558 4.75474 4.83073 4.92835 5.01139 5.02010 5.02950 5.15317 5.24993 5.34595 5.39998 5.49141 5.53717 5.58631 5.77989 5.90083 6.07704 6.14657 6.16660 6.21301 6.33557 6.45102 6.56433 6.63484 6.75645 6.94785 7.21975 7.28468 7.32278 7.45160 7.61228 7.78963 7.85593 8.12750 8.26914 8.41357 8.60538 8.72905 9.88638 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002493 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.960028 B =11226.539645 C =12376.596417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C -0.076 4.076 4 C -0.213 4.213 5 C 0.132 3.868 6 O -0.287 6.287 7 C 0.044 3.956 8 C 0.498 3.502 9 O -0.514 6.514 10 N -0.630 5.630 11 C 0.021 3.979 12 C -0.091 4.091 13 C -0.230 4.230 14 C -0.086 4.086 15 C -0.234 4.234 16 C 0.088 3.912 17 C -0.524 4.524 18 H 0.075 0.925 19 C 0.046 3.954 20 N -0.811 5.811 21 Si 1.074 2.926 22 H -0.275 1.275 23 H -0.263 1.263 24 H -0.290 1.290 25 C -0.148 4.148 26 C -0.049 4.049 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.407 0.593 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.286 0.714 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 -7.439 -3.332 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.131 4.131 3 C -0.094 4.094 4 C -0.232 4.232 5 C 0.087 3.913 6 O -0.199 6.199 7 C -0.035 4.035 8 C 0.283 3.717 9 O -0.391 6.391 10 N -0.273 5.273 11 C -0.072 4.072 12 C -0.111 4.111 13 C -0.249 4.249 14 C -0.105 4.105 15 C -0.253 4.253 16 C 0.083 3.917 17 C -0.553 4.553 18 H 0.093 0.907 19 C -0.174 4.174 20 N -0.433 5.433 21 Si 0.900 3.100 22 H -0.202 1.202 23 H -0.187 1.187 24 H -0.218 1.218 25 C -0.167 4.167 26 C -0.049 4.049 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.145 -7.334 -3.846 18.145 hybrid contribution -1.392 -0.067 0.962 1.694 sum -17.537 -7.401 -2.884 19.252 Atomic orbital electron populations 1.20772 0.91257 1.02595 1.02076 1.19647 0.96054 0.92510 1.04911 1.20790 0.93215 0.97589 0.97779 1.21275 0.95478 0.97096 1.09313 1.19052 0.82180 0.94256 0.95848 1.86162 1.15946 1.29559 1.88251 1.22478 0.91780 0.85554 1.03671 1.19892 0.87314 0.85494 0.78990 1.90623 1.76344 1.23855 1.48264 1.42739 1.05848 1.08952 1.69785 1.17691 0.80715 0.98679 1.10149 1.21176 0.95523 0.96554 0.97833 1.20360 0.92930 0.99485 1.12163 1.20409 0.97739 0.93974 0.98331 1.20709 0.94579 0.98710 1.11315 1.17471 0.90965 0.92725 0.90498 1.20362 1.06607 0.93391 1.34927 0.90734 1.27268 1.00353 0.91943 0.97836 1.70576 1.24888 1.34202 1.13611 0.83575 0.75005 0.75498 0.75883 1.20184 1.18735 1.21772 1.20284 0.92989 0.96521 1.06856 1.19515 0.92438 0.95143 0.97804 1.20876 1.00042 0.93869 1.02588 0.91507 0.91861 0.91358 0.85792 0.85320 0.89169 0.89040 0.75685 0.85156 0.88522 0.88687 0.87302 0.90258 0.85033 0.90874 0.90946 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.60 36.01 0.35 -0.41 16 2 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 3 C -0.08 -0.76 9.69 -39.61 -0.38 -1.15 16 4 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 5 C 0.13 1.79 6.69 -39.22 -0.26 1.52 16 6 O -0.29 -4.53 9.67 -39.34 -0.38 -4.91 16 7 C 0.04 0.62 5.22 36.00 0.19 0.80 16 8 C 0.50 9.30 7.75 -10.99 -0.09 9.22 16 9 O -0.51 -11.51 13.38 -14.36 -0.19 -11.71 16 10 N -0.63 -12.37 5.18 -9.47 -0.05 -12.42 16 11 C 0.02 0.50 6.54 -83.17 -0.54 -0.05 16 12 C -0.09 -2.11 8.78 -39.44 -0.35 -2.45 16 13 C -0.23 -5.06 10.04 -39.36 -0.39 -5.45 16 14 C -0.09 -1.88 9.96 -39.99 -0.40 -2.28 16 15 C -0.23 -5.56 7.33 -39.28 -0.29 -5.85 16 16 C 0.09 2.16 5.18 -106.65 -0.55 1.61 16 17 C -0.52 -13.02 8.75 -37.86 -0.33 -13.35 16 18 H 0.07 1.83 7.20 -52.49 -0.38 1.46 16 19 C 0.05 1.15 5.38 -17.32 -0.09 1.05 16 20 N -0.81 -20.61 13.66 55.55 0.76 -19.85 16 21 Si 1.07 23.33 25.01 -169.99 -4.25 19.08 16 22 H -0.27 -5.74 6.37 56.52 0.36 -5.38 16 23 H -0.26 -5.69 7.10 56.52 0.40 -5.29 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.15 -1.82 9.64 -39.44 -0.38 -2.20 16 26 C -0.05 -0.50 5.88 -104.65 -0.62 -1.12 16 27 C -0.12 -0.86 9.60 36.01 0.35 -0.51 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 5.94 -51.93 -0.31 0.09 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 33 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 34 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 35 H 0.41 7.10 7.33 -40.82 -0.30 6.80 16 36 H 0.13 3.03 5.39 -52.49 -0.28 2.75 16 37 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.11 2.55 4.35 -52.49 -0.23 2.32 16 40 H 0.29 7.04 8.73 -40.82 -0.36 6.68 16 41 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 44 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -30.15 359.62 -8.96 -39.11 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.50 Total: 10.57 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -4.77 Total: -25.29 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.71 Total: -32.27 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.57 Total: -16.62 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.25 Total: 19.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.15 -8.96 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559236481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.752 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds