Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38291 * 119.94422 * 2 1 4 4 C 1.38120 * 120.05618 * 179.74349 * 3 2 1 5 5 C 1.38757 * 119.94314 * 0.50893 * 4 3 2 6 6 O 1.35900 * 120.05568 * 179.74221 * 5 4 3 7 7 C 1.42900 * 116.99895 * 359.72637 * 6 5 4 8 8 C 1.50696 * 109.47118 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 179.97438 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 C 1.38706 * 119.88469 * 359.46694 * 5 4 3 26 26 C 1.38163 * 119.94845 * 0.27769 * 25 5 4 27 27 C 1.50700 * 119.97381 * 180.02562 * 26 25 5 28 28 H 1.09003 * 109.47094 * 270.02480 * 1 2 3 29 29 H 1.08996 * 109.47239 * 30.02712 * 1 2 3 30 30 H 1.09000 * 109.46667 * 150.02372 * 1 2 3 31 31 H 1.08000 * 119.96729 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.02870 * 180.27435 * 4 3 2 33 33 H 1.09000 * 109.47747 * 59.99485 * 7 6 5 34 34 H 1.09004 * 109.47161 * 300.00094 * 7 6 5 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 41 41 H 1.08008 * 120.02606 * 180.30185 * 25 5 4 42 42 H 1.09000 * 109.47380 * 89.99503 * 27 26 25 43 43 H 1.09002 * 109.47619 * 210.00288 * 27 26 25 44 44 H 1.09001 * 109.47043 * 329.99838 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0054 5 6 4.2735 0.0000 0.0001 6 8 5.6325 0.0001 0.0000 7 6 6.2812 1.2733 -0.0005 8 6 7.7752 1.0759 -0.0011 9 8 8.2387 -0.0448 -0.0006 10 7 8.5961 2.1448 -0.0022 11 6 9.9706 1.9661 -0.1229 12 6 10.4797 0.7811 -0.6317 13 6 11.8462 0.6071 -0.7445 14 6 12.7215 1.6131 -0.3568 15 6 12.2477 2.7915 0.1420 16 6 10.8607 2.9942 0.2672 17 6 10.3625 4.2093 0.7824 18 1 9.4005 4.2341 1.2725 19 6 11.1151 5.3829 0.6582 20 7 10.8913 6.3917 1.4610 21 14 12.4390 5.5091 -0.6536 22 1 13.7320 5.0336 -0.0993 23 1 12.0620 4.6702 -1.8196 24 1 12.5754 6.9235 -1.0848 25 6 3.5787 -1.2005 0.0006 26 6 2.1971 -1.1978 0.0006 27 6 1.4417 -2.5018 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6559 2.1328 -0.0004 32 1 4.1171 2.1371 0.0098 33 1 5.9883 1.8308 0.8892 34 1 5.9882 1.8300 -0.8907 35 1 8.2287 3.0386 0.0813 36 1 9.8081 -0.0081 -0.9359 37 1 12.2368 -0.3197 -1.1380 38 1 13.7867 1.4616 -0.4516 39 1 12.9365 3.5680 0.4404 40 1 10.1563 6.3547 2.0930 41 1 4.1174 -2.1367 0.0014 42 1 1.2596 -2.8154 1.0296 43 1 0.4895 -2.3707 -0.5123 44 1 2.0297 -3.2628 -0.5115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559236481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = -47.051720 kcal Electronic energy + Delta-G solvation = -25952.183279 eV Core-core repulsion = 22219.620059 eV Total energy + Delta-G solvation = -3732.563219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75620 -41.01180 -39.41174 -38.62303 -35.74808 -35.62190 -33.64421 -33.02312 -32.13266 -31.28430 -29.38955 -27.97342 -26.86867 -26.53867 -24.07620 -23.25179 -22.54783 -21.63539 -21.16752 -20.14534 -19.07263 -18.74257 -17.79750 -17.52998 -17.12013 -16.60008 -16.26206 -16.08751 -15.84106 -15.45999 -15.25311 -15.01126 -14.89284 -14.60886 -14.41803 -14.33358 -13.98943 -13.74944 -13.57853 -13.54867 -13.15824 -13.00193 -12.78430 -12.70137 -12.59410 -12.27814 -12.11422 -11.78811 -11.77176 -11.69880 -11.49920 -11.26600 -10.94791 -10.53646 -9.78381 -9.66466 -9.31159 -9.03820 -8.85654 -6.50929 0.32135 0.40703 0.60458 0.82403 1.40927 1.49592 1.51144 1.63576 1.80099 2.18760 2.63467 2.66158 2.71110 3.47779 3.49328 3.81066 3.86473 3.92420 3.98274 4.07577 4.25031 4.32494 4.33429 4.38410 4.44325 4.65090 4.73221 4.78184 4.81856 4.84481 4.94423 4.96716 5.00859 5.18036 5.19125 5.20576 5.35935 5.41507 5.42414 5.52836 5.62072 5.70434 5.82285 5.88946 5.99496 6.02144 6.31180 6.37146 6.54211 6.62298 6.81811 7.13461 7.99367 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002493 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.960028 B =11226.539645 C =12376.596417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.081 4.081 4 C -0.219 4.219 5 C 0.103 3.897 6 O -0.318 6.318 7 C 0.054 3.946 8 C 0.497 3.503 9 O -0.554 6.554 10 N -0.630 5.630 11 C 0.016 3.984 12 C -0.111 4.111 13 C -0.223 4.223 14 C -0.090 4.090 15 C -0.246 4.246 16 C 0.064 3.936 17 C -0.540 4.540 18 H 0.065 0.935 19 C 0.020 3.980 20 N -0.834 5.834 21 Si 1.100 2.900 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.282 1.282 25 C -0.169 4.169 26 C -0.055 4.055 27 C -0.117 4.117 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.417 0.583 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.281 0.719 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 -7.743 -4.088 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.099 4.099 4 C -0.237 4.237 5 C 0.059 3.941 6 O -0.231 6.231 7 C -0.024 4.024 8 C 0.285 3.715 9 O -0.433 6.433 10 N -0.273 5.273 11 C -0.078 4.078 12 C -0.131 4.131 13 C -0.242 4.242 14 C -0.108 4.108 15 C -0.266 4.266 16 C 0.060 3.940 17 C -0.569 4.569 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.458 5.458 21 Si 0.922 3.078 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.209 1.209 25 C -0.188 4.188 26 C -0.055 4.055 27 C -0.173 4.173 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.254 0.746 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.544 -7.628 -4.590 19.673 hybrid contribution -1.083 -0.156 1.183 1.612 sum -18.627 -7.784 -3.407 20.474 Atomic orbital electron populations 1.20844 0.88914 1.03820 1.03027 1.20091 0.97822 0.92110 1.03231 1.21167 0.92847 0.98929 0.96939 1.21492 0.96292 0.96858 1.09065 1.19299 0.81239 0.95541 0.98050 1.86093 1.17535 1.30358 1.89158 1.22441 0.88003 0.85708 1.06271 1.20704 0.89247 0.84436 0.77084 1.90592 1.77555 1.25337 1.49848 1.42763 1.04899 1.09899 1.69788 1.17928 0.82363 0.98360 1.09169 1.21358 0.96401 0.96590 0.98751 1.20768 0.92501 1.00467 1.10498 1.20756 0.99653 0.93026 0.97405 1.20927 0.94364 0.99659 1.11620 1.17686 0.91870 0.93040 0.91373 1.20353 1.06651 0.93967 1.35943 0.91741 1.28090 1.01490 0.91613 0.98420 1.70632 1.25613 1.34853 1.14669 0.83244 0.74241 0.75887 0.74395 1.18675 1.18913 1.20918 1.20481 0.94144 0.96164 1.07972 1.19873 0.91765 0.96881 0.96967 1.20945 1.00472 0.92414 1.03447 0.90545 0.90705 0.90158 0.83310 0.83864 0.86605 0.86057 0.74587 0.85534 0.85823 0.85202 0.87089 0.90774 0.85781 0.89959 0.89100 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.60 71.24 0.68 -0.46 16 2 C -0.13 -2.28 5.88 -19.85 -0.12 -2.40 16 3 C -0.08 -1.45 9.69 22.25 0.22 -1.24 16 4 C -0.22 -4.70 9.04 22.37 0.20 -4.50 16 5 C 0.10 2.78 6.69 22.51 0.15 2.93 16 6 O -0.32 -10.16 9.67 -73.39 -0.71 -10.87 16 7 C 0.05 1.47 5.22 71.23 0.37 1.84 16 8 C 0.50 18.72 7.75 87.66 0.68 19.40 16 9 O -0.55 -25.34 13.38 16.00 0.21 -25.12 16 10 N -0.63 -24.89 5.18 -302.27 -1.57 -26.46 16 11 C 0.02 0.77 6.54 38.88 0.25 1.02 16 12 C -0.11 -5.11 8.78 22.36 0.20 -4.91 16 13 C -0.22 -9.42 10.04 22.42 0.22 -9.19 16 14 C -0.09 -3.75 9.96 22.00 0.22 -3.54 16 15 C -0.25 -11.47 7.33 22.46 0.16 -11.30 16 16 C 0.06 3.18 5.18 -21.18 -0.11 3.07 16 17 C -0.54 -27.21 8.75 23.38 0.20 -27.01 16 18 H 0.06 3.26 7.20 -2.91 -0.02 3.24 16 19 C 0.02 0.98 5.38 85.26 0.46 1.44 16 20 N -0.83 -42.95 13.66 21.83 0.30 -42.65 16 21 Si 1.10 46.42 25.01 68.60 1.72 48.14 16 22 H -0.26 -10.33 6.37 99.48 0.63 -9.70 16 23 H -0.26 -11.13 7.10 99.48 0.71 -10.42 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 25 C -0.17 -4.21 9.64 22.36 0.22 -3.99 16 26 C -0.05 -1.06 5.88 -19.88 -0.12 -1.18 16 27 C -0.12 -1.50 9.60 71.24 0.68 -0.82 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.08 0.65 5.94 -2.39 -0.01 0.64 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 2.50 6.30 -2.91 -0.02 2.49 16 33 H 0.12 2.55 7.65 -2.39 -0.02 2.53 16 34 H 0.12 2.57 7.67 -2.38 -0.02 2.55 16 35 H 0.42 14.62 7.33 -92.71 -0.68 13.94 16 36 H 0.13 5.94 5.39 -2.91 -0.02 5.93 16 37 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.11 5.05 4.35 -2.91 -0.01 5.04 16 40 H 0.28 14.19 8.73 -92.71 -0.81 13.38 16 41 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.82 5.94 -2.39 -0.01 0.81 16 44 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 Total: -1.00 -66.04 359.62 4.79 -61.25 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.25 Total: 36.55 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 4.58 Total: -40.84 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -1.27 Total: -69.11 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.50 Total: -36.00 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.72 Total: 48.14 kcal Total: -66.04 4.79 -61.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559236481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.200 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds