Wall clock time and date at job start Tue Mar 31 2020 14:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00245 * 2 1 4 4 C 1.39005 * 119.91236 * 89.99772 * 3 2 1 5 5 C 1.50693 * 119.95033 * 359.97438 * 4 3 2 6 6 C 1.37687 * 120.08984 * 180.02562 * 4 3 2 7 7 C 1.39768 * 119.91339 * 359.97438 * 6 4 3 8 8 C 1.47552 * 120.09222 * 179.97438 * 7 6 4 9 9 O 1.21593 * 119.99831 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99662 * 180.02562 * 8 7 6 11 11 C 1.39011 * 119.99806 * 184.46915 * 10 8 7 12 12 C 1.38689 * 120.28926 * 331.46463 * 11 10 8 13 13 C 1.38204 * 120.03177 * 180.27472 * 12 11 10 14 14 C 1.38879 * 120.61892 * 359.49137 * 13 12 11 15 15 C 1.36451 * 120.58570 * 0.51413 * 14 13 12 16 16 C 1.40747 * 119.94531 * 359.74382 * 15 14 13 17 17 C 1.41054 * 120.30004 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99788 * 151.95896 * 17 16 15 19 19 C 1.39962 * 120.00149 * 331.95429 * 17 16 15 20 20 N 1.30855 * 120.00073 * 347.86320 * 19 17 16 21 21 Si 1.86802 * 119.99913 * 167.85587 * 19 17 16 22 22 H 1.48502 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46830 * 120.00026 * 21 19 17 24 24 H 1.48499 * 109.47138 * 240.00302 * 21 19 17 25 25 C 1.39763 * 119.81515 * 0.25763 * 7 6 4 26 26 C 1.37693 * 119.90528 * 359.46524 * 25 7 6 27 27 C 1.50708 * 119.95035 * 180.27686 * 26 25 7 28 28 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47483 * 300.00341 * 1 2 3 30 30 H 1.09007 * 109.47071 * 60.00648 * 1 2 3 31 31 H 1.08995 * 109.47641 * 270.01802 * 5 4 3 32 32 H 1.08995 * 109.47436 * 30.03016 * 5 4 3 33 33 H 1.09009 * 109.46804 * 150.02498 * 5 4 3 34 34 H 1.08003 * 120.04405 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00448 * 4.46441 * 10 8 7 36 36 H 1.08005 * 119.98131 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.68586 * 179.74999 * 13 12 11 38 38 H 1.08002 * 119.70533 * 180.28072 * 14 13 12 39 39 H 1.08002 * 120.03127 * 179.77014 * 15 14 13 40 40 H 0.97000 * 119.99720 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.04159 * 179.72689 * 25 7 6 42 42 H 1.08995 * 109.47047 * 270.27875 * 27 26 25 43 43 H 1.08997 * 109.46915 * 30.27964 * 27 26 25 44 44 H 1.09000 * 109.46533 * 150.28034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3598 1.8268 1.2049 5 6 2.0157 1.1529 2.5081 6 6 2.9844 3.0538 1.2091 7 6 3.3027 3.6781 -0.0002 8 6 3.9716 4.9933 -0.0002 9 8 4.2471 5.5352 1.0528 10 7 4.2770 5.5938 -1.1674 11 6 4.9894 6.7875 -1.1693 12 6 4.8929 7.6614 -0.0967 13 6 5.5991 8.8494 -0.1067 14 6 6.4178 9.1766 -1.1797 15 6 6.5313 8.3355 -2.2482 16 6 5.8189 7.1218 -2.2657 17 6 5.9312 6.2465 -3.3661 18 1 5.7904 5.1847 -3.2280 19 6 6.2249 6.7541 -4.6370 20 7 6.1618 8.0424 -4.8576 21 14 6.7073 5.5925 -6.0181 22 1 6.7040 4.1957 -5.5139 23 1 5.7344 5.7182 -7.1330 24 1 8.0663 5.9401 -6.5053 25 6 2.9801 3.0559 -1.2094 26 6 2.3606 1.8262 -1.2049 27 6 2.0180 1.1516 -2.5083 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.0172 1.4571 2.8220 32 1 2.0414 0.0714 2.3758 33 1 2.7399 1.4431 3.2694 34 1 3.2290 3.5328 2.1457 35 1 3.9999 5.1931 -2.0062 36 1 4.2624 7.4153 0.7450 37 1 5.5166 9.5276 0.7297 38 1 6.9665 10.1068 -1.1701 39 1 7.1677 8.6007 -3.0795 40 1 6.3650 8.3941 -5.7385 41 1 3.2204 3.5371 -2.1460 42 1 1.0197 1.4552 -2.8231 43 1 2.7428 1.4416 -3.2690 44 1 2.0439 0.0700 -2.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566644667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:03 Heat of formation + Delta-G solvation = -32.681336 kcal Electronic energy + Delta-G solvation = -26808.078431 eV Core-core repulsion = 23076.138358 eV Total energy + Delta-G solvation = -3731.940073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57450 -39.45255 -37.55272 -36.72752 -34.12596 -33.69015 -33.50713 -31.50858 -29.63346 -28.46852 -28.20653 -26.70243 -26.38818 -25.24205 -23.45290 -21.48069 -21.10026 -20.51145 -19.31886 -17.81058 -17.51037 -16.97887 -16.81036 -15.87353 -15.72437 -15.21100 -14.53709 -14.50287 -14.15842 -14.05297 -13.93419 -13.61550 -13.35104 -13.16681 -13.06183 -12.97374 -12.65911 -12.45595 -12.26127 -12.03500 -11.79190 -11.64008 -11.49450 -11.40163 -11.28753 -11.19385 -10.98190 -10.51085 -10.17735 -10.10639 -9.74412 -9.33291 -9.29498 -8.79167 -8.72575 -8.59037 -7.39597 -7.00609 -6.69940 -4.43237 0.73652 1.25292 2.59954 2.82320 3.02077 3.05930 3.12885 3.18464 3.63526 3.82434 3.85850 4.04315 4.59533 4.60609 4.66060 4.96266 5.00868 5.04166 5.21909 5.23755 5.27289 5.35342 5.43387 5.48730 5.50403 5.61294 5.64529 5.71132 5.91533 6.08137 6.23008 6.33153 6.35729 6.39791 6.52989 6.57315 6.60831 6.91009 7.03230 7.15294 7.27354 7.34019 7.62610 7.70556 7.95051 8.09141 8.10095 8.39690 8.53302 8.78409 8.79911 8.99647 10.13271 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.003721 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.050980 B = 7522.135585 C = 9453.166323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.106 3.894 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.057 4.057 7 C -0.117 4.117 8 C 0.538 3.462 9 O -0.537 6.537 10 N -0.626 5.626 11 C 0.013 3.987 12 C -0.095 4.095 13 C -0.223 4.223 14 C -0.115 4.115 15 C -0.147 4.147 16 C 0.101 3.899 17 C -0.468 4.468 18 H 0.075 0.925 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.082 4.082 26 C -0.105 4.105 27 C -0.112 4.112 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.403 0.597 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.280 0.720 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -13.510 4.178 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.062 3.938 4 C -0.110 4.110 5 C -0.166 4.166 6 C -0.076 4.076 7 C -0.120 4.120 8 C 0.326 3.674 9 O -0.417 6.417 10 N -0.267 5.267 11 C -0.080 4.080 12 C -0.115 4.115 13 C -0.243 4.243 14 C -0.134 4.134 15 C -0.167 4.167 16 C 0.097 3.903 17 C -0.499 4.499 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.421 5.421 21 Si 0.732 3.268 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.101 4.101 26 C -0.106 4.106 27 C -0.169 4.169 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.240 0.760 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.791 -13.162 4.699 17.064 hybrid contribution 0.005 -0.366 -1.245 1.298 sum -9.785 -13.528 3.454 17.050 Atomic orbital electron populations 1.22974 0.78962 1.03052 1.00844 1.85903 1.19747 1.25061 1.94311 1.18500 0.97736 0.86077 0.91498 1.20086 1.00941 0.94800 0.95188 1.20688 1.01729 1.00813 0.93411 1.21032 0.95306 0.93123 0.98130 1.20127 1.01936 0.95943 0.93991 1.18136 0.80248 0.84683 0.84369 1.90685 1.54466 1.65128 1.31374 1.42797 1.52850 1.22888 1.08172 1.17777 1.01530 0.88192 1.00548 1.20907 0.99925 0.92914 0.97707 1.20355 1.05820 0.98494 0.99651 1.20500 0.99534 0.98502 0.94854 1.20932 1.01967 0.95783 0.97990 1.17407 0.88417 0.93412 0.91026 1.19350 1.43785 0.94808 0.91916 0.90659 1.25854 0.92659 0.95453 1.00095 1.69814 1.35321 1.13232 1.23724 0.86273 0.79062 0.81247 0.80237 1.18450 1.19952 1.19687 1.21203 0.96981 0.94139 0.97756 1.20059 1.00631 0.94664 0.95239 1.20720 1.01892 1.00870 0.93425 0.88882 0.93519 0.93461 0.91409 0.90885 0.91120 0.84220 0.76034 0.86191 0.89157 0.89364 0.85961 0.90877 0.84826 0.91308 0.90921 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 11.13 101.05 1.12 1.40 16 2 O -0.33 -3.69 8.47 -18.82 -0.16 -3.85 16 3 C 0.11 1.33 5.67 -39.01 -0.22 1.11 16 4 C -0.11 -1.39 5.89 -104.54 -0.62 -2.00 16 5 C -0.11 -1.07 9.78 36.00 0.35 -0.71 16 6 C -0.06 -0.83 9.23 -39.21 -0.36 -1.19 16 7 C -0.12 -1.90 5.88 -104.96 -0.62 -2.52 16 8 C 0.54 10.78 7.63 -12.47 -0.10 10.69 16 9 O -0.54 -12.19 13.39 5.28 0.07 -12.12 16 10 N -0.63 -13.15 4.97 -10.41 -0.05 -13.20 16 11 C 0.01 0.33 6.44 -83.20 -0.54 -0.21 16 12 C -0.09 -2.32 8.75 -39.43 -0.34 -2.66 16 13 C -0.22 -5.26 10.04 -39.36 -0.39 -5.66 16 14 C -0.12 -2.74 9.96 -39.99 -0.40 -3.14 16 15 C -0.15 -3.78 8.61 -39.28 -0.34 -4.12 16 16 C 0.10 2.61 5.57 -106.64 -0.59 2.02 16 17 C -0.47 -11.63 8.35 -37.87 -0.32 -11.95 16 18 H 0.08 1.77 7.28 -52.49 -0.38 1.39 16 19 C 0.08 1.83 5.23 -17.32 -0.09 1.74 16 20 N -0.80 -19.70 10.87 55.55 0.60 -19.09 16 21 Si 0.91 17.77 29.58 -169.99 -5.03 12.75 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.08 -1.16 9.18 -39.21 -0.36 -1.52 16 26 C -0.11 -1.34 5.89 -104.53 -0.62 -1.95 16 27 C -0.11 -1.14 9.78 36.01 0.35 -0.78 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 33 H 0.07 0.64 8.08 -51.92 -0.42 0.22 16 34 H 0.14 2.02 7.64 -52.48 -0.40 1.62 16 35 H 0.40 7.61 5.76 -40.82 -0.24 7.37 16 36 H 0.12 2.91 5.72 -52.48 -0.30 2.61 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.21 6.21 -52.49 -0.33 2.88 16 40 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 41 H 0.13 1.76 6.40 -52.49 -0.34 1.42 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.07 0.71 7.52 -51.93 -0.39 0.32 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -29.53 366.95 -8.80 -38.33 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.69 Total: 13.13 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -4.07 Total: -21.46 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.55 Total: -32.29 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.09 Total: -15.98 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.53 -8.80 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566644667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.648 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds