Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00245 * 2 1 4 4 C 1.39005 * 119.91236 * 89.99772 * 3 2 1 5 5 C 1.50693 * 119.95033 * 359.97438 * 4 3 2 6 6 C 1.37687 * 120.08984 * 180.02562 * 4 3 2 7 7 C 1.39768 * 119.91339 * 359.97438 * 6 4 3 8 8 C 1.47552 * 120.09222 * 179.97438 * 7 6 4 9 9 O 1.21593 * 119.99831 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99662 * 180.02562 * 8 7 6 11 11 C 1.39011 * 119.99806 * 184.46915 * 10 8 7 12 12 C 1.38689 * 120.28926 * 331.46463 * 11 10 8 13 13 C 1.38204 * 120.03177 * 180.27472 * 12 11 10 14 14 C 1.38879 * 120.61892 * 359.49137 * 13 12 11 15 15 C 1.36451 * 120.58570 * 0.51413 * 14 13 12 16 16 C 1.40747 * 119.94531 * 359.74382 * 15 14 13 17 17 C 1.41054 * 120.30004 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99788 * 151.95896 * 17 16 15 19 19 C 1.39962 * 120.00149 * 331.95429 * 17 16 15 20 20 N 1.30855 * 120.00073 * 347.86320 * 19 17 16 21 21 Si 1.86802 * 119.99913 * 167.85587 * 19 17 16 22 22 H 1.48502 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46830 * 120.00026 * 21 19 17 24 24 H 1.48499 * 109.47138 * 240.00302 * 21 19 17 25 25 C 1.39763 * 119.81515 * 0.25763 * 7 6 4 26 26 C 1.37693 * 119.90528 * 359.46524 * 25 7 6 27 27 C 1.50708 * 119.95035 * 180.27686 * 26 25 7 28 28 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47483 * 300.00341 * 1 2 3 30 30 H 1.09007 * 109.47071 * 60.00648 * 1 2 3 31 31 H 1.08995 * 109.47641 * 270.01802 * 5 4 3 32 32 H 1.08995 * 109.47436 * 30.03016 * 5 4 3 33 33 H 1.09009 * 109.46804 * 150.02498 * 5 4 3 34 34 H 1.08003 * 120.04405 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00448 * 4.46441 * 10 8 7 36 36 H 1.08005 * 119.98131 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.68586 * 179.74999 * 13 12 11 38 38 H 1.08002 * 119.70533 * 180.28072 * 14 13 12 39 39 H 1.08002 * 120.03127 * 179.77014 * 15 14 13 40 40 H 0.97000 * 119.99720 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.04159 * 179.72689 * 25 7 6 42 42 H 1.08995 * 109.47047 * 270.27875 * 27 26 25 43 43 H 1.08997 * 109.46915 * 30.27964 * 27 26 25 44 44 H 1.09000 * 109.46533 * 150.28034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3598 1.8268 1.2049 5 6 2.0157 1.1529 2.5081 6 6 2.9844 3.0538 1.2091 7 6 3.3027 3.6781 -0.0002 8 6 3.9716 4.9933 -0.0002 9 8 4.2471 5.5352 1.0528 10 7 4.2770 5.5938 -1.1674 11 6 4.9894 6.7875 -1.1693 12 6 4.8929 7.6614 -0.0967 13 6 5.5991 8.8494 -0.1067 14 6 6.4178 9.1766 -1.1797 15 6 6.5313 8.3355 -2.2482 16 6 5.8189 7.1218 -2.2657 17 6 5.9312 6.2465 -3.3661 18 1 5.7904 5.1847 -3.2280 19 6 6.2249 6.7541 -4.6370 20 7 6.1618 8.0424 -4.8576 21 14 6.7073 5.5925 -6.0181 22 1 6.7040 4.1957 -5.5139 23 1 5.7344 5.7182 -7.1330 24 1 8.0663 5.9401 -6.5053 25 6 2.9801 3.0559 -1.2094 26 6 2.3606 1.8262 -1.2049 27 6 2.0180 1.1516 -2.5083 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.0172 1.4571 2.8220 32 1 2.0414 0.0714 2.3758 33 1 2.7399 1.4431 3.2694 34 1 3.2290 3.5328 2.1457 35 1 3.9999 5.1931 -2.0062 36 1 4.2624 7.4153 0.7450 37 1 5.5166 9.5276 0.7297 38 1 6.9665 10.1068 -1.1701 39 1 7.1677 8.6007 -3.0795 40 1 6.3650 8.3941 -5.7385 41 1 3.2204 3.5371 -2.1460 42 1 1.0197 1.4552 -2.8231 43 1 2.7428 1.4416 -3.2690 44 1 2.0439 0.0700 -2.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566644667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = -47.205502 kcal Electronic energy + Delta-G solvation = -26808.708246 eV Core-core repulsion = 23076.138358 eV Total energy + Delta-G solvation = -3732.569888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78697 -40.84503 -39.10143 -37.97608 -35.68050 -35.52967 -34.61671 -32.64160 -31.51591 -30.16688 -28.96034 -27.71606 -27.39352 -26.92008 -24.80500 -23.22600 -22.41928 -21.87829 -20.88271 -19.30226 -18.78904 -18.54519 -18.09672 -17.15774 -16.90407 -16.66230 -16.12572 -16.07561 -15.67877 -15.12622 -14.89252 -14.73049 -14.49723 -14.47716 -14.28577 -14.12749 -14.06625 -13.86580 -13.57104 -13.20959 -13.09309 -12.87084 -12.84488 -12.77457 -12.53726 -12.39100 -12.27684 -12.13409 -11.98615 -11.56483 -11.11312 -11.06531 -10.93622 -10.53586 -9.74030 -9.66348 -9.32688 -8.84193 -8.51638 -6.33322 -0.40445 0.21385 0.87336 1.06439 1.41877 1.52004 1.55627 1.74857 2.21325 2.30355 2.53286 2.77239 2.87633 3.62578 3.67341 3.69974 3.75635 4.11044 4.24224 4.34597 4.46485 4.50398 4.51567 4.59092 4.60230 4.66022 4.72778 4.75291 4.77169 4.78244 4.84125 5.04983 5.11000 5.18990 5.20539 5.26768 5.29011 5.31762 5.39771 5.43000 5.57559 5.76929 5.83020 6.10545 6.17631 6.24270 6.46733 6.62713 6.68973 6.92316 6.98006 7.29310 8.35754 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.003721 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.050980 B = 7522.135585 C = 9453.166323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.340 6.340 3 C 0.115 3.885 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.064 4.064 7 C -0.140 4.140 8 C 0.539 3.461 9 O -0.570 6.570 10 N -0.627 5.627 11 C 0.006 3.994 12 C -0.111 4.111 13 C -0.228 4.228 14 C -0.119 4.119 15 C -0.170 4.170 16 C 0.074 3.926 17 C -0.490 4.490 18 H 0.081 0.919 19 C 0.038 3.962 20 N -0.825 5.825 21 Si 0.981 3.019 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.270 1.270 25 C -0.083 4.083 26 C -0.108 4.108 27 C -0.110 4.110 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.411 0.589 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.288 0.712 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 -15.961 3.518 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.070 3.930 4 C -0.111 4.111 5 C -0.164 4.164 6 C -0.083 4.083 7 C -0.143 4.143 8 C 0.329 3.671 9 O -0.452 6.452 10 N -0.269 5.269 11 C -0.089 4.089 12 C -0.131 4.131 13 C -0.247 4.247 14 C -0.137 4.137 15 C -0.191 4.191 16 C 0.070 3.930 17 C -0.519 4.519 18 H 0.099 0.901 19 C -0.177 4.177 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.102 4.102 26 C -0.109 4.109 27 C -0.167 4.167 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.249 0.751 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.156 0.844 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.052 -15.626 4.043 19.562 hybrid contribution 0.284 0.313 -0.971 1.059 sum -10.768 -15.312 3.073 18.970 Atomic orbital electron populations 1.23250 0.76759 1.04995 1.01471 1.85882 1.21675 1.23887 1.94320 1.18643 0.96826 0.86160 0.91332 1.20346 0.99966 0.94002 0.96784 1.20747 1.02776 1.00916 0.91946 1.21057 0.95855 0.94043 0.97311 1.19862 1.04187 0.94595 0.95671 1.18724 0.79332 0.85640 0.83396 1.90643 1.55857 1.66351 1.32320 1.42777 1.52803 1.22200 1.09083 1.17952 1.01432 0.89320 1.00188 1.21078 1.00567 0.93590 0.97836 1.20661 1.05213 0.98569 1.00295 1.20745 0.99563 0.99149 0.94285 1.20979 1.02773 0.96777 0.98524 1.17748 0.89116 0.94065 0.92042 1.19583 1.44837 0.95008 0.92482 0.90069 1.26696 0.91860 0.96953 1.02146 1.69873 1.35467 1.14973 1.24816 0.85165 0.78635 0.79071 0.76945 1.17836 1.18934 1.19531 1.21258 0.97052 0.94814 0.97080 1.20335 0.99796 0.94048 0.96688 1.20776 1.02898 1.00967 0.92028 0.86361 0.92880 0.92899 0.89727 0.90098 0.90653 0.84820 0.75095 0.86419 0.86696 0.86895 0.87128 0.90131 0.84367 0.89655 0.90540 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.13 113.37 1.26 1.60 16 2 O -0.34 -6.51 8.47 -90.27 -0.76 -7.28 16 3 C 0.11 2.63 5.67 22.64 0.13 2.76 16 4 C -0.11 -2.63 5.89 -19.81 -0.12 -2.74 16 5 C -0.11 -1.85 9.78 71.23 0.70 -1.15 16 6 C -0.06 -1.86 9.23 22.51 0.21 -1.65 16 7 C -0.14 -4.61 5.88 -20.08 -0.12 -4.73 16 8 C 0.54 22.33 7.63 86.70 0.66 22.99 16 9 O -0.57 -26.90 13.39 -4.01 -0.05 -26.95 16 10 N -0.63 -27.17 4.97 -305.12 -1.52 -28.69 16 11 C 0.01 0.29 6.44 38.91 0.25 0.54 16 12 C -0.11 -5.56 8.75 22.37 0.20 -5.37 16 13 C -0.23 -10.83 10.04 22.42 0.22 -10.61 16 14 C -0.12 -5.73 9.96 22.01 0.22 -5.51 16 15 C -0.17 -9.03 8.61 22.47 0.19 -8.84 16 16 C 0.07 3.95 5.57 -21.17 -0.12 3.83 16 17 C -0.49 -24.74 8.35 23.38 0.20 -24.54 16 18 H 0.08 3.86 7.28 -2.91 -0.02 3.84 16 19 C 0.04 1.83 5.23 85.26 0.45 2.28 16 20 N -0.83 -41.38 10.87 21.83 0.24 -41.15 16 21 Si 0.98 35.99 29.58 68.60 2.03 38.02 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 23 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 24 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 25 C -0.08 -2.31 9.18 22.51 0.21 -2.11 16 26 C -0.11 -2.55 5.89 -19.81 -0.12 -2.66 16 27 C -0.11 -1.94 9.78 71.24 0.70 -1.24 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.28 7.52 -2.39 -0.02 1.26 16 33 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 34 H 0.13 3.98 7.64 -2.91 -0.02 3.96 16 35 H 0.41 15.96 5.76 -92.71 -0.53 15.43 16 36 H 0.12 5.92 5.72 -2.91 -0.02 5.90 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.11 6.02 6.21 -2.91 -0.02 6.00 16 40 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 41 H 0.14 3.60 6.40 -2.91 -0.02 3.58 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 44 H 0.08 1.31 7.52 -2.39 -0.02 1.30 16 Total: -1.00 -64.87 366.95 5.55 -59.32 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.50 Total: 43.87 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 5.12 Total: -37.15 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.28 Total: -69.84 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.82 Total: -34.23 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -64.87 5.55 -59.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566644667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.114 kcal (2) G-P(sol) polarization free energy of solvation -64.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds