Wall clock time and date at job start Tue Mar 31 2020 14:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47407 * 240.00469 * 3 2 1 5 5 H 1.48504 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47070 * 120.00417 * 3 2 1 7 7 C 1.37868 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99866 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.53818 * 299.90035 * 9 7 2 11 11 C 1.53119 * 109.50306 * 60.00038 * 9 7 2 12 12 C 1.53117 * 109.16074 * 177.59295 * 11 9 7 13 13 C 1.53040 * 109.28127 * 302.34534 * 12 11 9 14 14 N 1.46849 * 109.52121 * 59.17673 * 13 12 11 15 15 C 1.46899 * 110.99880 * 174.16029 * 14 13 12 16 16 C 1.52996 * 109.47356 * 294.03744 * 15 14 13 17 17 H 1.08998 * 109.47340 * 59.73890 * 16 15 14 18 18 O 1.42902 * 109.46850 * 299.73949 * 16 15 14 19 19 C 1.53005 * 109.47438 * 179.74302 * 16 15 14 20 20 O 1.42897 * 109.47303 * 184.99693 * 19 16 15 21 21 C 1.42895 * 114.00034 * 180.02562 * 20 19 16 22 22 C 1.50699 * 109.47144 * 180.02562 * 21 20 19 23 23 C 1.33390 * 125.20649 * 89.99975 * 22 21 20 24 24 C 1.38419 * 114.92204 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.92387 * 0.02562 * 24 23 22 26 26 S 1.75887 * 125.20121 * 269.68823 * 22 21 20 27 27 C 1.46844 * 111.19702 * 298.26196 * 14 13 12 28 28 H 0.97002 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.52539 * 57.69295 * 11 9 7 30 30 H 1.08995 * 109.57532 * 297.53151 * 11 9 7 31 31 H 1.09004 * 109.50359 * 182.40575 * 12 11 9 32 32 H 1.09005 * 109.50508 * 62.28594 * 12 11 9 33 33 H 1.09002 * 109.45921 * 299.16372 * 13 12 11 34 34 H 1.09000 * 109.45636 * 179.19152 * 13 12 11 35 35 H 1.09005 * 109.46922 * 54.03345 * 15 14 13 36 36 H 1.08994 * 109.47318 * 174.03478 * 15 14 13 37 37 H 0.96702 * 114.00511 * 299.99693 * 18 16 15 38 38 H 1.08996 * 109.46444 * 305.00016 * 19 16 15 39 39 H 1.09003 * 109.46739 * 64.99406 * 19 16 15 40 40 H 1.09000 * 109.47083 * 299.99991 * 21 20 19 41 41 H 1.08993 * 109.47498 * 59.99858 * 21 20 19 42 42 H 1.08001 * 122.53666 * 359.97438 * 23 22 21 43 43 H 1.08002 * 122.54024 * 180.02562 * 24 23 22 44 44 H 1.07993 * 125.20475 * 179.97438 * 25 24 23 45 45 H 1.09009 * 109.45865 * 181.76250 * 27 14 13 46 46 H 1.09003 * 109.45882 * 301.72037 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6258 -2.5589 0.8902 11 6 0.3701 -2.5807 -1.2502 12 6 -0.3456 -3.9342 -1.2730 13 6 0.6946 -5.0563 -1.2418 14 7 1.5113 -4.9347 -0.0275 15 6 2.4289 -6.0741 0.1061 16 6 1.6226 -7.3542 0.3344 17 1 0.9543 -7.5182 -0.5109 18 8 0.8535 -7.2255 1.5318 19 6 2.5780 -8.5419 0.4671 20 8 1.8236 -9.7516 0.5637 21 6 2.6250 -10.9276 0.6925 22 6 1.7308 -12.1372 0.7852 23 6 1.2996 -12.8561 -0.2523 24 6 0.4863 -13.9265 0.0775 25 6 0.2565 -14.0765 1.3828 26 16 1.1025 -12.8214 2.2787 27 6 2.2450 -3.6628 -0.0062 28 1 -0.4850 0.8401 0.0004 29 1 0.9909 -2.4819 -2.1407 30 1 -0.3679 -1.7788 -1.2298 31 1 -0.9414 -4.0155 -2.1822 32 1 -0.9961 -4.0166 -0.4023 33 1 1.3360 -4.9815 -2.1199 34 1 0.1877 -6.0213 -1.2434 35 1 3.0191 -6.1740 -0.8048 36 1 3.0939 -5.9076 0.9535 37 1 1.3844 -7.0772 2.3264 38 1 3.2259 -8.5865 -0.4083 39 1 3.1863 -8.4204 1.3635 40 1 3.2742 -11.0221 -0.1780 41 1 3.2339 -10.8556 1.5936 42 1 1.5650 -12.6208 -1.2725 43 1 0.0693 -14.5899 -0.6658 44 1 -0.3522 -14.8526 1.8226 45 1 2.8644 -3.6158 0.8895 46 1 2.8792 -3.5946 -0.8901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:01 Heat of formation + Delta-G solvation = -63.378782 kcal Electronic energy + Delta-G solvation = -24911.716508 eV Core-core repulsion = 21313.889245 eV Total energy + Delta-G solvation = -3597.827262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.14321 -38.41105 -37.59412 -36.26809 -33.60314 -31.89958 -31.40123 -30.00157 -29.35968 -26.51404 -25.15407 -24.95199 -23.22228 -22.38598 -21.75656 -20.62350 -19.60801 -18.57717 -17.68491 -17.18062 -16.51708 -16.30274 -16.08139 -15.62604 -15.03213 -14.90019 -14.74931 -14.20900 -13.77264 -13.50027 -13.28132 -13.19568 -13.08180 -12.75882 -12.67315 -12.31907 -12.26059 -11.97454 -11.93328 -11.66756 -11.27652 -11.04968 -10.92933 -10.83982 -10.69849 -10.54497 -10.06813 -9.96059 -9.89093 -9.78361 -9.41873 -9.09645 -8.96985 -8.75818 -8.68208 -8.27423 -7.62555 -5.94760 -4.01398 0.60830 1.31437 1.69787 2.37759 3.33081 3.38073 3.39504 3.43098 4.29871 4.46060 4.54195 4.65021 4.72469 4.78274 4.90618 4.93740 5.07972 5.17104 5.23133 5.26486 5.28249 5.34777 5.38028 5.68159 5.77821 5.80052 5.87055 5.94157 6.06673 6.12433 6.14412 6.31302 6.41364 6.53135 6.76300 6.79202 6.86785 6.99495 7.26374 7.42323 7.67966 7.76096 7.80588 7.92687 8.11758 8.21060 8.50290 9.02474 9.62612 11.11018 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.035217 B = 0.001926 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.876967 B =14535.011675 C =14720.305790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.526 5.526 15 C 0.026 3.974 16 C 0.116 3.884 17 H 0.104 0.896 18 O -0.535 6.535 19 C 0.030 3.970 20 O -0.368 6.368 21 C 0.132 3.868 22 C -0.181 4.181 23 C -0.119 4.119 24 C -0.138 4.138 25 C -0.212 4.212 26 S 0.118 5.882 27 C 0.068 3.932 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.369 0.631 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.058 0.942 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -26.839 0.789 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.250 5.250 15 C -0.103 4.103 16 C 0.056 3.944 17 H 0.121 0.879 18 O -0.339 6.339 19 C -0.048 4.048 20 O -0.288 6.288 21 C 0.054 3.946 22 C -0.299 4.299 23 C -0.150 4.150 24 C -0.169 4.169 25 C -0.348 4.348 26 S 0.382 5.618 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.215 0.785 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.076 0.924 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.642 -26.445 2.315 26.795 hybrid contribution 1.713 0.564 -1.943 2.651 sum 5.354 -25.881 0.372 26.432 Atomic orbital electron populations 1.69887 1.05812 1.26413 1.50472 1.24938 0.94837 0.98922 0.95172 0.86690 0.79603 0.83354 0.78489 1.20438 1.21316 1.20336 1.21101 0.92722 0.90718 1.50917 0.92971 1.18651 0.92581 0.90123 0.94964 0.94680 1.21653 1.00020 0.94814 0.98358 1.21662 0.97200 0.96289 1.00295 1.22085 0.95691 0.99084 0.89777 1.61879 1.23350 1.01533 1.38262 1.22655 0.94804 0.92015 1.00835 1.21893 0.92831 0.89886 0.89803 0.87875 1.86664 1.36257 1.94707 1.16266 1.23353 0.95060 0.85631 1.00724 1.88071 1.32933 1.13133 1.94614 1.20700 0.90762 0.82181 1.00975 1.24169 1.07371 1.01959 0.96354 1.20181 0.99156 0.95849 0.99820 1.20174 1.01047 0.99701 0.95970 1.25711 1.07195 1.04361 0.97522 1.84346 1.45351 1.23025 1.09107 1.22332 0.96437 0.88511 0.98553 0.92994 0.95296 0.89102 0.93597 0.91905 0.96141 0.92167 0.94736 0.90727 0.78497 0.92470 0.92808 0.91465 0.92285 0.84165 0.84148 0.81780 0.92381 0.96449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.35 55.43 0.63 -24.88 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.40 2.27 -91.69 -0.21 1.20 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16 14 N -0.53 -9.69 4.53 -234.67 -1.06 -10.76 16 15 C 0.03 0.37 4.62 -3.83 -0.02 0.35 16 16 C 0.12 1.52 3.13 -26.73 -0.08 1.43 16 17 H 0.10 1.48 6.42 -51.93 -0.33 1.15 16 18 O -0.54 -7.98 13.17 -40.08 -0.53 -8.51 16 19 C 0.03 0.31 5.57 37.16 0.21 0.52 16 20 O -0.37 -4.42 10.29 -40.08 -0.41 -4.83 16 21 C 0.13 1.21 6.43 36.00 0.23 1.44 16 22 C -0.18 -1.77 6.14 -36.00 -0.22 -1.99 16 23 C -0.12 -1.06 10.05 -41.21 -0.41 -1.48 16 24 C -0.14 -1.10 10.18 -41.21 -0.42 -1.52 16 25 C -0.21 -1.65 11.23 29.04 0.33 -1.33 16 26 S 0.12 1.06 23.33 -107.50 -2.51 -1.45 16 27 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.00 6.21 -51.93 -0.32 0.67 16 35 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 37 H 0.37 4.25 9.05 45.56 0.41 4.67 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.06 1.20 8.01 -51.92 -0.42 0.78 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -31.27 381.70 -11.33 -42.60 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.85 Total: 2.77 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.32 Total: -16.99 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.43 Total: -35.63 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.94 Total: -13.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.27 -11.33 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.783 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds