Wall clock time and date at job start Tue Mar 31 2020 14:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47407 * 240.00469 * 3 2 1 5 5 H 1.48504 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47070 * 120.00417 * 3 2 1 7 7 C 1.37868 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99866 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.53818 * 299.90035 * 9 7 2 11 11 C 1.53119 * 109.50306 * 60.00038 * 9 7 2 12 12 C 1.53117 * 109.16074 * 177.59295 * 11 9 7 13 13 C 1.53040 * 109.28127 * 302.34534 * 12 11 9 14 14 N 1.46849 * 109.52121 * 59.17673 * 13 12 11 15 15 C 1.46899 * 110.99880 * 174.16029 * 14 13 12 16 16 C 1.52996 * 109.47356 * 294.03744 * 15 14 13 17 17 H 1.08998 * 109.47340 * 59.73890 * 16 15 14 18 18 O 1.42902 * 109.46850 * 299.73949 * 16 15 14 19 19 C 1.53005 * 109.47438 * 179.74302 * 16 15 14 20 20 O 1.42897 * 109.47303 * 184.99693 * 19 16 15 21 21 C 1.42895 * 114.00034 * 180.02562 * 20 19 16 22 22 C 1.50699 * 109.47144 * 180.02562 * 21 20 19 23 23 C 1.33390 * 125.20649 * 89.99975 * 22 21 20 24 24 C 1.38419 * 114.92204 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.92387 * 0.02562 * 24 23 22 26 26 S 1.75887 * 125.20121 * 269.68823 * 22 21 20 27 27 C 1.46844 * 111.19702 * 298.26196 * 14 13 12 28 28 H 0.97002 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.52539 * 57.69295 * 11 9 7 30 30 H 1.08995 * 109.57532 * 297.53151 * 11 9 7 31 31 H 1.09004 * 109.50359 * 182.40575 * 12 11 9 32 32 H 1.09005 * 109.50508 * 62.28594 * 12 11 9 33 33 H 1.09002 * 109.45921 * 299.16372 * 13 12 11 34 34 H 1.09000 * 109.45636 * 179.19152 * 13 12 11 35 35 H 1.09005 * 109.46922 * 54.03345 * 15 14 13 36 36 H 1.08994 * 109.47318 * 174.03478 * 15 14 13 37 37 H 0.96702 * 114.00511 * 299.99693 * 18 16 15 38 38 H 1.08996 * 109.46444 * 305.00016 * 19 16 15 39 39 H 1.09003 * 109.46739 * 64.99406 * 19 16 15 40 40 H 1.09000 * 109.47083 * 299.99991 * 21 20 19 41 41 H 1.08993 * 109.47498 * 59.99858 * 21 20 19 42 42 H 1.08001 * 122.53666 * 359.97438 * 23 22 21 43 43 H 1.08002 * 122.54024 * 180.02562 * 24 23 22 44 44 H 1.07993 * 125.20475 * 179.97438 * 25 24 23 45 45 H 1.09009 * 109.45865 * 181.76250 * 27 14 13 46 46 H 1.09003 * 109.45882 * 301.72037 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6258 -2.5589 0.8902 11 6 0.3701 -2.5807 -1.2502 12 6 -0.3456 -3.9342 -1.2730 13 6 0.6946 -5.0563 -1.2418 14 7 1.5113 -4.9347 -0.0275 15 6 2.4289 -6.0741 0.1061 16 6 1.6226 -7.3542 0.3344 17 1 0.9543 -7.5182 -0.5109 18 8 0.8535 -7.2255 1.5318 19 6 2.5780 -8.5419 0.4671 20 8 1.8236 -9.7516 0.5637 21 6 2.6250 -10.9276 0.6925 22 6 1.7308 -12.1372 0.7852 23 6 1.2996 -12.8561 -0.2523 24 6 0.4863 -13.9265 0.0775 25 6 0.2565 -14.0765 1.3828 26 16 1.1025 -12.8214 2.2787 27 6 2.2450 -3.6628 -0.0062 28 1 -0.4850 0.8401 0.0004 29 1 0.9909 -2.4819 -2.1407 30 1 -0.3679 -1.7788 -1.2298 31 1 -0.9414 -4.0155 -2.1822 32 1 -0.9961 -4.0166 -0.4023 33 1 1.3360 -4.9815 -2.1199 34 1 0.1877 -6.0213 -1.2434 35 1 3.0191 -6.1740 -0.8048 36 1 3.0939 -5.9076 0.9535 37 1 1.3844 -7.0772 2.3264 38 1 3.2259 -8.5865 -0.4083 39 1 3.1863 -8.4204 1.3635 40 1 3.2742 -11.0221 -0.1780 41 1 3.2339 -10.8556 1.5936 42 1 1.5650 -12.6208 -1.2725 43 1 0.0693 -14.5899 -0.6658 44 1 -0.3522 -14.8526 1.8226 45 1 2.8644 -3.6158 0.8895 46 1 2.8792 -3.5946 -0.8901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:00 Heat of formation + Delta-G solvation = -84.326184 kcal Electronic energy + Delta-G solvation = -24912.624855 eV Core-core repulsion = 21313.889245 eV Total energy + Delta-G solvation = -3598.735610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28500 -39.40274 -38.49359 -37.35141 -35.39775 -33.53317 -32.21801 -31.71280 -30.53597 -27.32303 -26.92320 -26.20357 -23.85650 -23.73011 -23.41021 -21.96200 -20.35749 -20.21574 -18.56033 -18.34591 -17.87299 -17.37127 -16.98303 -16.65643 -16.34582 -16.31438 -15.92982 -15.59613 -15.03369 -14.94104 -14.53537 -14.32199 -14.08438 -13.89061 -13.77792 -13.73559 -13.39657 -13.27910 -12.83172 -12.77402 -12.71620 -12.58529 -12.52008 -12.43407 -11.91360 -11.76012 -11.68886 -11.64546 -11.36056 -11.04112 -10.72822 -10.65731 -10.62846 -10.35553 -9.71359 -9.41418 -9.06691 -8.06339 -6.21148 -0.02354 0.68985 1.08014 1.42241 1.43718 1.51305 1.76086 2.42659 2.59945 3.19572 3.20388 3.65364 3.76651 3.96865 4.07897 4.14269 4.16507 4.23615 4.26187 4.27540 4.38419 4.44001 4.45462 4.52713 4.63053 4.65806 4.69034 4.72416 4.74716 4.89210 4.98073 5.09013 5.11612 5.17932 5.19750 5.33921 5.40463 5.52772 5.55265 5.64224 5.97312 6.12512 6.14329 6.22320 6.37452 6.46674 6.92014 6.97768 7.46753 8.98052 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.035217 B = 0.001926 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.876967 B =14535.011675 C =14720.305790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.067 3.933 14 N -0.541 5.541 15 C 0.029 3.971 16 C 0.121 3.879 17 H 0.089 0.911 18 O -0.561 6.561 19 C 0.036 3.964 20 O -0.395 6.395 21 C 0.130 3.870 22 C -0.203 4.203 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.209 4.209 26 S 0.091 5.909 27 C 0.083 3.917 28 H 0.260 0.740 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.381 0.619 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.187 0.813 45 H 0.060 0.940 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 -28.462 0.094 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.061 4.061 14 N -0.265 5.265 15 C -0.099 4.099 16 C 0.061 3.939 17 H 0.107 0.893 18 O -0.367 6.367 19 C -0.041 4.041 20 O -0.316 6.316 21 C 0.053 3.947 22 C -0.320 4.320 23 C -0.156 4.156 24 C -0.178 4.178 25 C -0.345 4.345 26 S 0.354 5.646 27 C -0.044 4.044 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.180 0.820 44 H 0.204 0.796 45 H 0.079 0.921 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 5.104 -28.091 1.625 28.597 hybrid contribution 1.213 1.006 -1.713 2.328 sum 6.317 -27.085 -0.087 27.812 Atomic orbital electron populations 1.70048 1.07261 1.27099 1.51167 1.25766 0.95674 1.02475 0.94857 0.85649 0.78358 0.79011 0.78837 1.19601 1.21119 1.19571 1.21498 0.93038 0.92071 1.50803 0.92781 1.18579 0.93028 0.91507 0.93557 0.98856 1.21458 0.99119 0.96032 0.97514 1.21572 0.97616 0.95104 1.00575 1.22030 0.95232 0.98789 0.90054 1.61771 1.24373 1.01767 1.38636 1.22720 0.94431 0.90618 1.02178 1.21814 0.92764 0.90538 0.88773 0.89276 1.86620 1.37807 1.94888 1.17416 1.23251 0.94206 0.84124 1.02517 1.88018 1.34464 1.14181 1.94889 1.20847 0.90628 0.81028 1.02243 1.24377 1.08353 1.02681 0.96574 1.20487 0.98867 0.95887 1.00315 1.20478 1.00902 0.99836 0.96565 1.26036 1.06845 1.04193 0.97433 1.84392 1.46178 1.24109 1.09893 1.21984 0.95192 0.88613 0.98637 0.93120 0.95756 0.92521 0.91452 0.93652 0.95248 0.90146 0.93073 0.89376 0.77075 0.90461 0.91079 0.89651 0.91388 0.82976 0.81965 0.79582 0.92131 0.96432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 11.35 21.44 0.24 -54.00 16 2 C 0.01 0.62 5.30 84.65 0.45 1.06 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.91 8.56 25.60 0.22 -29.69 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.70 2.27 -11.49 -0.03 2.67 16 10 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 11 C -0.10 -5.08 5.02 30.67 0.15 -4.92 16 12 C -0.11 -4.49 6.09 30.65 0.19 -4.31 16 13 C 0.07 2.31 5.29 86.33 0.46 2.77 16 14 N -0.54 -19.31 4.53 -896.35 -4.06 -23.36 16 15 C 0.03 0.74 4.62 86.30 0.40 1.14 16 16 C 0.12 2.91 3.13 30.59 0.10 3.01 16 17 H 0.09 2.39 6.42 -2.39 -0.02 2.37 16 18 O -0.56 -16.10 13.17 -144.34 -1.90 -18.00 16 19 C 0.04 0.65 5.57 71.98 0.40 1.05 16 20 O -0.40 -8.76 10.29 -144.34 -1.49 -10.25 16 21 C 0.13 2.15 6.43 71.24 0.46 2.61 16 22 C -0.20 -3.70 6.14 24.59 0.15 -3.55 16 23 C -0.12 -2.02 10.05 21.22 0.21 -1.80 16 24 C -0.15 -2.07 10.18 21.22 0.22 -1.85 16 25 C -0.21 -2.94 11.23 66.72 0.75 -2.19 16 26 S 0.09 1.57 23.33 -56.49 -1.32 0.25 16 27 C 0.08 3.48 4.68 86.33 0.40 3.89 16 28 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 3.17 6.15 -2.39 -0.01 3.15 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.97 8.14 -2.38 -0.02 1.96 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 2.50 6.21 -2.39 -0.01 2.49 16 35 H 0.05 1.19 8.12 -2.38 -0.02 1.17 16 36 H 0.09 2.04 7.98 -2.39 -0.02 2.02 16 37 H 0.38 8.36 9.05 -74.06 -0.67 7.69 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.06 2.46 8.01 -2.38 -0.02 2.45 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.84 381.70 -1.68 -70.52 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.29 Total: 18.93 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 4.53 Total: -30.12 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.81 Total: -77.37 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -3.39 Total: -28.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -68.84 -1.68 -70.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.808 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds