Wall clock time and date at job start Tue Mar 31 2020 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47197 * 275.00052 * 3 2 1 5 5 H 1.48495 * 109.47403 * 35.00280 * 3 2 1 6 6 H 1.48501 * 109.47027 * 155.00245 * 3 2 1 7 7 C 1.37876 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99757 * 175.30453 * 7 2 1 9 9 C 1.50695 * 120.00660 * 355.30131 * 7 2 1 10 10 H 1.09005 * 109.49853 * 305.43480 * 9 7 2 11 11 C 1.53038 * 109.50231 * 185.36800 * 9 7 2 12 12 C 1.53041 * 109.53848 * 178.68339 * 11 9 7 13 13 C 1.53197 * 109.31367 * 61.36618 * 12 11 9 14 14 N 1.46924 * 108.77297 * 305.36401 * 13 12 11 15 15 C 1.34773 * 120.63023 * 233.58687 * 14 13 12 16 16 O 1.21554 * 120.00228 * 184.18842 * 15 14 13 17 17 C 1.47864 * 120.00060 * 4.18862 * 15 14 13 18 18 C 1.39652 * 120.08571 * 314.29218 * 17 15 14 19 19 C 1.38023 * 120.09883 * 179.97438 * 18 17 15 20 20 C 1.38156 * 120.27197 * 0.28200 * 19 18 17 21 21 C 1.39408 * 120.17287 * 359.48343 * 20 19 18 22 22 C 1.48431 * 120.05084 * 180.25645 * 21 20 19 23 23 C 1.46705 * 127.11086 * 359.94441 * 22 21 20 24 24 C 1.34378 * 106.02429 * 179.83138 * 23 22 21 25 25 O 1.34159 * 108.98659 * 0.43786 * 24 23 22 26 26 C 1.34082 * 110.74262 * 359.70740 * 25 24 23 27 27 C 1.39098 * 119.89901 * 0.49150 * 21 20 19 28 28 C 1.46926 * 118.74206 * 53.86043 * 14 13 12 29 29 H 0.97005 * 119.99315 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46303 * 58.65863 * 11 9 7 31 31 H 1.09007 * 109.44810 * 298.69542 * 11 9 7 32 32 H 1.08998 * 109.49511 * 301.41100 * 12 11 9 33 33 H 1.08999 * 109.49634 * 181.31112 * 12 11 9 34 34 H 1.09000 * 109.58405 * 185.57853 * 13 12 11 35 35 H 1.09002 * 109.70299 * 65.21852 * 13 12 11 36 36 H 1.08006 * 119.95250 * 359.97438 * 18 17 15 37 37 H 1.07993 * 119.86310 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.91214 * 179.72419 * 20 19 18 39 39 H 1.07997 * 126.98622 * 0.02562 * 23 22 21 40 40 H 1.08005 * 125.50789 * 180.18339 * 24 23 22 41 41 H 1.08004 * 125.77056 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.13629 * 179.74635 * 27 21 20 43 43 H 1.08999 * 109.58483 * 65.92501 * 28 14 13 44 44 H 1.08999 * 109.58980 * 186.35295 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5036 2.6198 0.8031 6 1 3.5956 1.4118 0.5916 7 6 2.0045 -1.1941 -0.0005 8 1 3.0818 -1.1957 -0.0771 9 6 1.2548 -2.4970 0.1058 10 1 0.6181 -2.4793 0.9904 11 6 2.2520 -3.6526 0.2172 12 6 1.4914 -4.9731 0.3582 13 6 0.6293 -5.1969 -0.8883 14 7 -0.2317 -4.0227 -1.0847 15 6 -1.5663 -4.1629 -1.2091 16 8 -2.2598 -3.1934 -1.4471 17 6 -2.1871 -5.4962 -1.0560 18 6 -1.6267 -6.6065 -1.6914 19 6 -2.2057 -7.8512 -1.5482 20 6 -3.3446 -8.0056 -0.7816 21 6 -3.9106 -6.9059 -0.1384 22 6 -5.1310 -7.0759 0.6892 23 6 -5.8671 -8.3208 0.9356 24 6 -6.8924 -7.9925 1.7399 25 8 -6.8467 -6.6752 1.9897 26 6 -5.8004 -6.1103 1.3700 27 6 -3.3329 -5.6483 -0.2773 28 6 0.3905 -2.6932 -1.1491 29 1 -0.4849 0.8401 0.0004 30 1 2.8851 -3.5029 1.0917 31 1 2.8720 -3.6845 -0.6788 32 1 0.8523 -4.9324 1.2402 33 1 2.2022 -5.7931 0.4608 34 1 0.0114 -6.0842 -0.7506 35 1 1.2706 -5.3297 -1.7596 36 1 -0.7390 -6.4909 -2.2956 37 1 -1.7694 -8.7071 -2.0416 38 1 -3.7953 -8.9815 -0.6772 39 1 -5.6310 -9.3021 0.5515 40 1 -7.6357 -8.6777 2.1201 41 1 -5.5346 -5.0641 1.4064 42 1 -3.7706 -4.7930 0.2160 43 1 1.0144 -2.6246 -2.0402 44 1 -0.3850 -1.9281 -1.1836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:41 Heat of formation + Delta-G solvation = 4.725539 kcal Electronic energy + Delta-G solvation = -26897.809838 eV Core-core repulsion = 23167.491849 eV Total energy + Delta-G solvation = -3730.317989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52702 -40.11055 -38.31400 -36.62241 -33.98631 -33.22503 -31.81337 -31.25308 -30.85723 -29.68877 -28.87445 -25.30672 -25.06879 -23.49686 -23.02621 -21.80084 -21.43630 -20.50162 -19.76807 -18.70640 -17.81772 -16.69141 -16.36752 -16.10112 -16.02610 -15.55224 -15.14893 -14.85021 -14.59520 -14.05552 -13.97345 -13.73829 -13.38310 -13.19319 -13.05922 -12.83184 -12.71507 -12.58829 -12.42108 -12.06459 -11.86017 -11.60616 -11.21470 -11.01152 -10.89512 -10.54041 -10.51665 -10.27961 -10.18987 -9.87921 -9.39665 -9.20803 -9.12005 -8.91197 -8.86486 -8.47693 -8.12269 -7.75867 -6.01262 -4.09111 0.80769 1.17658 1.73250 2.46882 2.90111 3.25467 3.30814 3.38104 3.40722 3.63919 3.95595 4.38063 4.42857 4.50839 4.77509 4.82044 4.96415 5.02151 5.18493 5.28161 5.29648 5.32488 5.38045 5.51312 5.58284 5.69287 5.79673 5.85099 5.97878 5.98962 6.14321 6.18263 6.30884 6.31697 6.39061 6.44300 6.60540 6.66048 6.79513 6.85768 6.95186 6.96239 7.14095 7.24491 7.62254 7.84150 7.97851 8.21043 8.37433 8.80653 8.95966 9.56630 11.04877 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003029 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.259034 B = 9241.763647 C =10206.616151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.094 3.906 14 N -0.597 5.597 15 C 0.546 3.454 16 O -0.532 6.532 17 C -0.106 4.106 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.098 4.098 21 C -0.018 4.018 22 C -0.147 4.147 23 C -0.205 4.205 24 C -0.038 4.038 25 O -0.180 6.180 26 C -0.014 4.014 27 C -0.067 4.067 28 C 0.114 3.886 29 H 0.263 0.737 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.203 0.797 41 H 0.208 0.792 42 H 0.130 0.870 43 H 0.044 0.956 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -20.016 0.391 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.029 4.029 14 N -0.328 5.328 15 C 0.333 3.667 16 O -0.410 6.410 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.018 4.018 22 C -0.148 4.148 23 C -0.224 4.224 24 C -0.104 4.104 25 O -0.076 6.076 26 C -0.082 4.082 27 C -0.086 4.086 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.169 0.831 40 H 0.220 0.780 41 H 0.225 0.775 42 H 0.147 0.853 43 H 0.062 0.938 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.079 -19.189 0.440 21.233 hybrid contribution 0.703 0.693 -0.139 0.997 sum -8.376 -18.496 0.301 20.307 Atomic orbital electron populations 1.69925 1.05786 1.26845 1.49137 1.25060 0.94870 0.99286 0.94793 0.86582 0.79896 0.83559 0.77992 1.20723 1.21160 1.19882 1.21073 0.93154 0.90145 1.51628 0.92358 1.19055 0.92653 0.92182 0.93943 0.95046 1.21640 0.98578 0.94149 1.00515 1.21947 0.98666 0.99031 0.97531 1.22092 0.93668 0.88927 0.98256 1.48449 1.05158 1.09731 1.69488 1.18289 0.82596 0.87733 0.78129 1.90801 1.61741 1.39876 1.48595 1.20071 0.96669 0.94283 0.99884 1.21444 0.99288 0.91863 0.98933 1.20985 0.96161 0.97230 0.99636 1.21181 0.95769 0.97999 0.96651 1.17921 0.93370 0.93223 0.97275 1.20227 0.97953 0.93310 1.03359 1.22797 0.97322 0.98745 1.03501 1.23897 1.01814 0.82568 1.02164 1.83892 1.42911 1.21755 1.59073 1.24258 0.87776 0.99141 0.97013 1.21132 0.93869 0.96473 0.97128 1.22432 0.98445 0.80699 0.98986 0.92683 0.92956 0.93228 0.92150 0.92220 0.89738 0.91917 0.84972 0.85375 0.85856 0.83084 0.78044 0.77524 0.85256 0.93764 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 11.64 55.43 0.64 -25.00 16 2 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.07 8.49 -34.44 -0.29 -14.36 16 8 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 9 C 0.04 1.00 2.20 -91.43 -0.20 0.80 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C 0.09 1.47 5.19 -3.71 -0.02 1.45 16 14 N -0.60 -12.03 2.97 -173.60 -0.51 -12.54 16 15 C 0.55 11.25 7.29 -12.32 -0.09 11.16 16 16 O -0.53 -13.25 16.42 5.32 0.09 -13.17 16 17 C -0.11 -1.71 5.19 -105.01 -0.54 -2.26 16 18 C -0.10 -1.24 7.31 -39.13 -0.29 -1.52 16 19 C -0.12 -1.28 10.02 -39.69 -0.40 -1.68 16 20 C -0.10 -1.06 9.61 -39.18 -0.38 -1.44 16 21 C -0.02 -0.23 5.87 -104.94 -0.62 -0.84 16 22 C -0.15 -1.73 6.24 -103.16 -0.64 -2.37 16 23 C -0.20 -1.92 10.54 -37.53 -0.40 -2.31 16 24 C -0.04 -0.32 12.05 29.37 0.35 0.04 16 25 O -0.18 -1.93 10.55 6.69 0.07 -1.86 16 26 C -0.01 -0.16 11.53 29.86 0.34 0.18 16 27 C -0.07 -1.01 9.22 -38.84 -0.36 -1.37 16 28 C 0.11 2.76 5.48 -3.48 -0.02 2.74 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.13 4.21 -51.93 -0.22 0.92 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.13 1.52 6.55 -52.48 -0.34 1.18 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.03 7.24 -52.48 -0.38 0.65 16 39 H 0.15 1.06 7.60 -52.49 -0.40 0.67 16 40 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.21 1.97 7.33 -52.48 -0.38 1.58 16 42 H 0.13 1.95 7.08 -52.49 -0.37 1.58 16 43 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.12 3.33 5.41 -51.93 -0.28 3.04 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -32.99 359.81 -8.97 -41.96 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.73 Total: 3.75 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.94 Total: -14.79 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.13 Total: -37.54 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.16 Total: -15.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.99 -8.97 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds