Wall clock time and date at job start Tue Mar 31 2020 13:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47197 * 275.00052 * 3 2 1 5 5 H 1.48495 * 109.47403 * 35.00280 * 3 2 1 6 6 H 1.48501 * 109.47027 * 155.00245 * 3 2 1 7 7 C 1.37876 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99757 * 175.30453 * 7 2 1 9 9 C 1.50695 * 120.00660 * 355.30131 * 7 2 1 10 10 H 1.09005 * 109.49853 * 305.43480 * 9 7 2 11 11 C 1.53038 * 109.50231 * 185.36800 * 9 7 2 12 12 C 1.53041 * 109.53848 * 178.68339 * 11 9 7 13 13 C 1.53197 * 109.31367 * 61.36618 * 12 11 9 14 14 N 1.46924 * 108.77297 * 305.36401 * 13 12 11 15 15 C 1.34773 * 120.63023 * 233.58687 * 14 13 12 16 16 O 1.21554 * 120.00228 * 184.18842 * 15 14 13 17 17 C 1.47864 * 120.00060 * 4.18862 * 15 14 13 18 18 C 1.39652 * 120.08571 * 314.29218 * 17 15 14 19 19 C 1.38023 * 120.09883 * 179.97438 * 18 17 15 20 20 C 1.38156 * 120.27197 * 0.28200 * 19 18 17 21 21 C 1.39408 * 120.17287 * 359.48343 * 20 19 18 22 22 C 1.48431 * 120.05084 * 180.25645 * 21 20 19 23 23 C 1.46705 * 127.11086 * 359.94441 * 22 21 20 24 24 C 1.34378 * 106.02429 * 179.83138 * 23 22 21 25 25 O 1.34159 * 108.98659 * 0.43786 * 24 23 22 26 26 C 1.34082 * 110.74262 * 359.70740 * 25 24 23 27 27 C 1.39098 * 119.89901 * 0.49150 * 21 20 19 28 28 C 1.46926 * 118.74206 * 53.86043 * 14 13 12 29 29 H 0.97005 * 119.99315 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46303 * 58.65863 * 11 9 7 31 31 H 1.09007 * 109.44810 * 298.69542 * 11 9 7 32 32 H 1.08998 * 109.49511 * 301.41100 * 12 11 9 33 33 H 1.08999 * 109.49634 * 181.31112 * 12 11 9 34 34 H 1.09000 * 109.58405 * 185.57853 * 13 12 11 35 35 H 1.09002 * 109.70299 * 65.21852 * 13 12 11 36 36 H 1.08006 * 119.95250 * 359.97438 * 18 17 15 37 37 H 1.07993 * 119.86310 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.91214 * 179.72419 * 20 19 18 39 39 H 1.07997 * 126.98622 * 0.02562 * 23 22 21 40 40 H 1.08005 * 125.50789 * 180.18339 * 24 23 22 41 41 H 1.08004 * 125.77056 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.13629 * 179.74635 * 27 21 20 43 43 H 1.08999 * 109.58483 * 65.92501 * 28 14 13 44 44 H 1.08999 * 109.58980 * 186.35295 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5036 2.6198 0.8031 6 1 3.5956 1.4118 0.5916 7 6 2.0045 -1.1941 -0.0005 8 1 3.0818 -1.1957 -0.0771 9 6 1.2548 -2.4970 0.1058 10 1 0.6181 -2.4793 0.9904 11 6 2.2520 -3.6526 0.2172 12 6 1.4914 -4.9731 0.3582 13 6 0.6293 -5.1969 -0.8883 14 7 -0.2317 -4.0227 -1.0847 15 6 -1.5663 -4.1629 -1.2091 16 8 -2.2598 -3.1934 -1.4471 17 6 -2.1871 -5.4962 -1.0560 18 6 -1.6267 -6.6065 -1.6914 19 6 -2.2057 -7.8512 -1.5482 20 6 -3.3446 -8.0056 -0.7816 21 6 -3.9106 -6.9059 -0.1384 22 6 -5.1310 -7.0759 0.6892 23 6 -5.8671 -8.3208 0.9356 24 6 -6.8924 -7.9925 1.7399 25 8 -6.8467 -6.6752 1.9897 26 6 -5.8004 -6.1103 1.3700 27 6 -3.3329 -5.6483 -0.2773 28 6 0.3905 -2.6932 -1.1491 29 1 -0.4849 0.8401 0.0004 30 1 2.8851 -3.5029 1.0917 31 1 2.8720 -3.6845 -0.6788 32 1 0.8523 -4.9324 1.2402 33 1 2.2022 -5.7931 0.4608 34 1 0.0114 -6.0842 -0.7506 35 1 1.2706 -5.3297 -1.7596 36 1 -0.7390 -6.4909 -2.2956 37 1 -1.7694 -8.7071 -2.0416 38 1 -3.7953 -8.9815 -0.6772 39 1 -5.6310 -9.3021 0.5515 40 1 -7.6357 -8.6777 2.1201 41 1 -5.5346 -5.0641 1.4064 42 1 -3.7706 -4.7930 0.2160 43 1 1.0144 -2.6246 -2.0402 44 1 -0.3850 -1.9281 -1.1836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:40 Heat of formation + Delta-G solvation = -14.472729 kcal Electronic energy + Delta-G solvation = -26898.642337 eV Core-core repulsion = 23167.491849 eV Total energy + Delta-G solvation = -3731.150488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.29194 -41.50163 -39.54774 -38.29936 -35.46307 -34.58520 -33.47603 -32.26984 -31.94999 -31.23444 -29.75544 -27.17233 -26.64568 -24.49150 -24.23784 -23.39786 -22.40214 -21.41362 -21.14400 -20.08575 -18.98100 -18.38378 -17.74922 -17.26762 -16.95987 -16.88513 -16.53117 -16.37749 -15.87305 -15.46136 -15.23249 -15.04460 -14.69500 -14.50068 -14.32136 -14.16235 -13.93302 -13.77276 -13.67664 -13.48370 -13.20043 -12.93810 -12.72790 -12.54890 -12.33800 -12.24799 -12.13604 -11.86069 -11.65235 -11.23953 -11.15206 -10.96534 -10.70545 -10.54111 -9.99035 -9.92235 -9.45549 -9.03793 -8.14061 -6.30354 -0.15970 0.13090 1.00164 1.39064 1.39597 1.51315 1.57637 1.82016 2.16958 2.21206 2.40831 2.88440 3.15133 3.46135 3.61622 3.78304 3.96555 3.97724 4.06268 4.14516 4.23814 4.29449 4.32300 4.51226 4.56049 4.57728 4.70922 4.77059 4.77591 4.86166 4.89045 4.97091 5.06769 5.15863 5.21595 5.24940 5.30159 5.36320 5.37873 5.50521 5.52642 5.55520 5.60323 5.85424 5.89454 5.94605 6.19464 6.30123 6.58188 6.83284 7.20836 7.40085 8.90548 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003029 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.259034 B = 9241.763647 C =10206.616151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.040 3.960 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.089 3.911 14 N -0.599 5.599 15 C 0.538 3.462 16 O -0.595 6.595 17 C -0.129 4.129 18 C -0.096 4.096 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.021 4.021 22 C -0.166 4.166 23 C -0.211 4.211 24 C -0.032 4.032 25 O -0.193 6.193 26 C -0.036 4.036 27 C -0.090 4.090 28 C 0.127 3.873 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.181 0.819 40 H 0.244 0.756 41 H 0.205 0.795 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -24.683 -0.079 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.032 4.032 14 N -0.330 5.330 15 C 0.327 3.673 16 O -0.477 6.477 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.021 4.021 22 C -0.168 4.168 23 C -0.229 4.229 24 C -0.098 4.098 25 O -0.090 6.090 26 C -0.103 4.103 27 C -0.109 4.109 28 C 0.005 3.995 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.192 0.808 38 H 0.178 0.822 39 H 0.198 0.802 40 H 0.260 0.740 41 H 0.221 0.779 42 H 0.124 0.876 43 H 0.061 0.939 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.936 -23.905 -0.020 25.188 hybrid contribution 0.281 2.055 0.040 2.074 sum -7.655 -21.850 0.020 23.152 Atomic orbital electron populations 1.70133 1.07587 1.27275 1.50589 1.25944 0.95545 1.03121 0.94580 0.85520 0.78915 0.79030 0.78078 1.20178 1.21328 1.18440 1.21522 0.93594 0.91440 1.50754 0.91749 1.18982 0.93079 0.93879 0.92030 0.99610 1.21531 0.97624 0.94081 1.01066 1.21923 0.99020 0.98383 0.97145 1.22484 0.93707 0.87887 0.99109 1.48462 1.05790 1.09655 1.69046 1.19120 0.82405 0.89143 0.76609 1.90747 1.63081 1.42539 1.51352 1.19735 0.97879 0.92717 1.02923 1.21640 0.99865 0.91573 0.98373 1.21452 0.95190 0.97282 0.98221 1.21661 0.95340 0.98592 0.94802 1.18078 0.93689 0.92758 0.97594 1.20459 0.98012 0.94790 1.03499 1.23131 0.97067 0.98878 1.03860 1.24785 1.02147 0.81806 1.01049 1.83894 1.42671 1.23206 1.59196 1.24372 0.88516 0.99564 0.97882 1.21074 0.94350 0.97307 0.98155 1.21850 0.96873 0.82151 0.98650 0.93193 0.92895 0.92054 0.93692 0.87465 0.86751 0.89240 0.83310 0.80806 0.82245 0.80215 0.73996 0.77883 0.87600 0.93877 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.13 11.64 21.45 0.25 -56.88 16 2 C 0.01 0.43 5.36 84.65 0.45 0.88 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.53 -29.84 8.49 25.60 0.22 -29.62 16 8 H 0.06 3.43 7.75 -2.91 -0.02 3.41 16 9 C 0.04 2.04 2.20 -11.32 -0.02 2.01 16 10 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 11 C -0.11 -4.10 5.11 30.62 0.16 -3.94 16 12 C -0.13 -3.84 6.08 30.67 0.19 -3.66 16 13 C 0.09 2.61 5.19 86.36 0.45 3.06 16 14 N -0.60 -25.05 2.97 -821.44 -2.44 -27.49 16 15 C 0.54 23.67 7.29 86.79 0.63 24.30 16 16 O -0.60 -32.70 16.42 -3.89 -0.06 -32.76 16 17 C -0.13 -4.27 5.19 -20.11 -0.10 -4.37 16 18 C -0.10 -2.20 7.31 22.56 0.16 -2.03 16 19 C -0.10 -1.66 10.02 22.20 0.22 -1.44 16 20 C -0.09 -1.51 9.61 22.53 0.22 -1.29 16 21 C -0.02 -0.51 5.87 -20.07 -0.12 -0.63 16 22 C -0.17 -3.78 6.24 -18.92 -0.12 -3.90 16 23 C -0.21 -3.33 10.54 23.60 0.25 -3.08 16 24 C -0.03 -0.46 12.05 66.94 0.81 0.35 16 25 O -0.19 -4.07 10.55 1.01 0.01 -4.06 16 26 C -0.04 -0.84 11.53 67.25 0.78 -0.07 16 27 C -0.09 -2.84 9.22 22.75 0.21 -2.63 16 28 C 0.13 6.51 5.48 86.51 0.47 6.98 16 29 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 2.71 4.21 -2.39 -0.01 2.70 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.15 2.86 6.55 -2.91 -0.02 2.84 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.16 1.68 7.24 -2.91 -0.02 1.66 16 39 H 0.18 1.66 7.60 -2.91 -0.02 1.63 16 40 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.20 4.56 7.33 -2.91 -0.02 4.54 16 42 H 0.11 3.68 7.08 -2.91 -0.02 3.66 16 43 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 4.19 5.41 -2.39 -0.01 4.18 16 Total: -1.00 -81.20 359.81 5.65 -75.55 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.02 Total: 17.75 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 4.85 Total: -19.08 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.19 Total: -84.37 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.05 Total: -36.82 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.20 5.65 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.074 kcal (2) G-P(sol) polarization free energy of solvation -81.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds