Wall clock time and date at job start Tue Mar 31 2020 14:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00107 * 2 1 4 4 C 1.38218 * 119.99904 * 179.79170 * 3 2 1 5 5 C 1.38251 * 119.99833 * 0.43904 * 4 3 2 6 6 C 1.38217 * 120.00182 * 359.81849 * 5 4 3 7 7 C 1.38213 * 120.00028 * 180.27908 * 2 1 3 8 8 C 1.50700 * 119.99823 * 359.97263 * 7 2 1 9 9 H 1.09010 * 109.47238 * 35.00624 * 8 7 2 10 10 O 1.42898 * 109.47167 * 155.00132 * 8 7 2 11 11 C 1.53002 * 109.47673 * 275.00436 * 8 7 2 12 12 N 1.46491 * 109.47455 * 179.97438 * 11 8 7 13 13 C 1.34776 * 120.00177 * 179.97438 * 12 11 8 14 14 O 1.21551 * 119.99700 * 0.02562 * 13 12 11 15 15 C 1.47885 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.39918 * 120.02872 * 359.71958 * 15 13 12 17 17 C 1.38325 * 120.36059 * 179.74042 * 16 15 13 18 18 C 1.37753 * 120.41361 * 0.56717 * 17 16 15 19 19 C 1.40756 * 120.03659 * 359.69666 * 18 17 16 20 20 C 1.41429 * 120.17673 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00515 * 334.92274 * 20 19 18 22 22 C 1.39941 * 120.00167 * 154.92461 * 20 19 18 23 23 N 1.30825 * 119.99955 * 342.58681 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 162.58702 * 22 20 19 25 25 H 1.48501 * 109.46961 * 60.00313 * 24 22 20 26 26 H 1.48493 * 109.47073 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46997 * 300.00135 * 24 22 20 28 28 C 1.38995 * 120.02530 * 180.02562 * 15 13 12 29 29 H 1.09003 * 109.46592 * 269.72672 * 1 2 3 30 30 H 1.08999 * 109.46984 * 149.72716 * 1 2 3 31 31 H 1.09000 * 109.46570 * 29.72265 * 1 2 3 32 32 H 1.08001 * 120.00262 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.99687 * 180.27764 * 4 3 2 34 34 H 1.08006 * 119.99800 * 179.83278 * 5 4 3 35 35 H 1.08005 * 119.99938 * 179.97438 * 6 5 4 36 36 H 0.96698 * 113.99722 * 60.00367 * 10 8 7 37 37 H 1.09000 * 109.46410 * 300.00309 * 11 8 7 38 38 H 1.09000 * 109.46756 * 59.99622 * 11 8 7 39 39 H 0.97008 * 119.99920 * 0.02562 * 12 11 8 40 40 H 1.07997 * 119.81908 * 0.02562 * 16 15 13 41 41 H 1.08007 * 119.79466 * 180.28417 * 17 16 15 42 42 H 1.07992 * 119.98574 * 179.72000 * 18 17 16 43 43 H 0.96999 * 120.00490 * 179.97438 * 23 22 20 44 44 H 1.08012 * 120.20067 * 359.94884 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 -0.0059 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5336 -2.3931 -0.6003 10 8 2.2636 -3.5224 -0.5860 11 6 1.0811 -2.8875 1.4238 12 7 0.3481 -4.1559 1.4181 13 6 -0.0762 -4.6942 2.5785 14 8 0.1489 -4.1270 3.6298 15 6 -0.8157 -5.9749 2.5728 16 6 -1.0803 -6.6252 1.3625 17 6 -1.7668 -7.8261 1.3496 18 6 -2.2080 -8.3898 2.5265 19 6 -1.9560 -7.7474 3.7534 20 6 -2.4072 -8.3238 4.9635 21 1 -3.2539 -8.9942 4.9597 22 6 -1.7564 -8.0256 6.1660 23 7 -0.5552 -7.5075 6.1487 24 14 -2.6028 -8.3673 7.7958 25 1 -2.9057 -9.8172 7.9019 26 1 -1.7093 -7.9648 8.9114 27 1 -3.8665 -7.5908 7.8696 28 6 -1.2541 -6.5302 3.7692 29 1 -0.3632 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3632 0.8925 -0.5095 32 1 1.6584 2.1327 -0.0004 33 1 4.1205 2.1326 0.0089 34 1 5.3518 -0.0001 0.0002 35 1 4.1206 -2.1324 -0.0100 36 1 3.0930 -3.6739 -0.1125 37 1 1.9921 -2.9965 2.0124 38 1 0.4564 -2.1092 1.8619 39 1 0.1687 -4.6087 0.5791 40 1 -0.7427 -6.1896 0.4338 41 1 -1.9620 -8.3225 0.4105 42 1 -2.7472 -9.3253 2.5080 43 1 -0.1042 -7.3004 6.9821 44 1 -1.0557 -6.0296 4.7055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732831940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:16 Heat of formation + Delta-G solvation = -52.470011 kcal Electronic energy + Delta-G solvation = -26192.598887 eV Core-core repulsion = 22459.800713 eV Total energy + Delta-G solvation = -3732.798174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29788 -39.10180 -37.39338 -36.80522 -34.09512 -33.68695 -33.18987 -31.56006 -30.31167 -29.43364 -28.19459 -27.07946 -25.31271 -24.07261 -22.19939 -21.82973 -21.13553 -20.89226 -19.48507 -17.83590 -17.65779 -16.51860 -16.40304 -15.75470 -15.41807 -15.08038 -14.94245 -14.82606 -14.59991 -14.15827 -13.86203 -13.74389 -13.56238 -13.35930 -13.13574 -12.65635 -12.56692 -12.49019 -12.41800 -12.16052 -11.97751 -11.62991 -11.33063 -11.15511 -11.11337 -11.05383 -10.73272 -10.50457 -10.42522 -10.02918 -9.68295 -9.20570 -9.12102 -9.01493 -8.83698 -8.69196 -7.62121 -7.50945 -6.79046 -4.40762 1.03901 1.11901 2.21492 2.82940 3.07825 3.09585 3.17180 3.39258 3.64714 3.86504 3.92730 4.17122 4.45324 4.54706 4.61178 4.64771 4.73426 4.79507 4.89523 5.08390 5.27208 5.37815 5.42344 5.52615 5.59902 5.61003 5.68948 5.79361 5.88522 5.93357 6.10999 6.19450 6.23891 6.29792 6.34804 6.71744 6.72689 6.81817 6.99344 7.02461 7.21949 7.34585 7.38973 7.71178 7.76671 7.93360 8.09990 8.19889 8.51072 8.80906 8.84157 8.94616 10.15840 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.002523 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.983109 B =11095.907933 C =11743.128293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.115 4.115 8 C 0.136 3.864 9 H 0.117 0.883 10 O -0.550 6.550 11 C 0.097 3.903 12 N -0.732 5.732 13 C 0.564 3.436 14 O -0.548 6.548 15 C -0.128 4.128 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.376 0.624 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.403 0.597 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.285 0.715 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 14.219 -11.619 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.077 3.923 9 H 0.135 0.865 10 O -0.356 6.356 11 C -0.028 4.028 12 N -0.387 5.387 13 C 0.354 3.646 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.236 4.236 17 C -0.117 4.117 18 C -0.231 4.231 19 C 0.096 3.904 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.409 5.409 24 Si 0.735 3.265 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.225 0.775 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.240 0.760 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.491 14.675 -11.112 19.518 hybrid contribution 0.269 -0.227 0.738 0.818 sum 6.760 14.448 -10.374 19.028 Atomic orbital electron populations 1.20948 0.90983 1.03118 1.03042 1.19734 0.96181 0.92429 0.98892 1.21036 0.94305 0.97412 1.01018 1.21162 0.94331 0.98108 0.99835 1.21096 0.99920 0.92379 1.00774 1.20880 0.93376 0.98442 0.99576 1.20241 0.94331 0.94983 1.02023 1.21103 0.93501 0.83870 0.93863 0.86545 1.86628 1.35457 1.56889 1.56663 1.21844 0.97619 0.87529 0.95779 1.45840 1.58992 1.23698 1.10139 1.18870 0.77912 0.85191 0.82578 1.90698 1.57439 1.63151 1.31292 1.19451 1.03767 0.94525 0.95369 1.20365 1.09267 0.99174 0.94796 1.20444 0.99018 0.95502 0.96689 1.21107 1.08683 1.00495 0.92802 1.17598 0.90031 0.90262 0.92527 1.19548 1.13589 1.24984 0.90863 0.90119 1.25962 0.94001 0.93040 1.01578 1.69780 1.10222 1.30587 1.30291 0.86324 0.80237 0.79779 0.80173 1.18965 1.20244 1.18735 1.21632 0.98556 0.94836 0.96192 0.90449 0.91050 0.91241 0.85916 0.86049 0.85950 0.85911 0.77499 0.91463 0.90801 0.76016 0.89110 0.88867 0.88611 0.90411 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.39 36.01 0.34 -0.71 16 2 C -0.07 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 6 C -0.10 -1.00 9.30 -39.58 -0.37 -1.36 16 7 C -0.11 -1.19 5.07 -104.63 -0.53 -1.72 16 8 C 0.14 1.47 2.79 -27.88 -0.08 1.40 16 9 H 0.12 1.20 6.16 -51.92 -0.32 0.88 16 10 O -0.55 -6.07 12.74 -35.23 -0.45 -6.51 16 11 C 0.10 1.33 5.32 -4.05 -0.02 1.31 16 12 N -0.73 -12.11 5.40 -61.24 -0.33 -12.44 16 13 C 0.56 12.37 7.77 -12.31 -0.10 12.28 16 14 O -0.55 -13.79 16.33 5.32 0.09 -13.70 16 15 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 16 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 17 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 18 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 19 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 20 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 21 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 23 N -0.78 -20.90 10.97 55.55 0.61 -20.29 16 24 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.09 -2.47 8.23 -38.44 -0.32 -2.78 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 6.03 -51.93 -0.31 0.27 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.12 0.95 6.41 -52.48 -0.34 0.61 16 36 H 0.38 3.20 7.32 45.56 0.33 3.53 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 39 H 0.40 6.03 6.37 -40.82 -0.26 5.77 16 40 H 0.09 1.61 6.38 -52.49 -0.33 1.28 16 41 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 42 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 44 H 0.13 3.85 5.77 -52.48 -0.30 3.55 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.32 368.08 -10.10 -41.42 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -4.87 Total: 14.59 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -5.66 Total: -22.44 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.28 Total: -32.73 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.36 Total: -20.22 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.32 -10.10 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732831940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.052 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds