Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00107 * 2 1 4 4 C 1.38218 * 119.99904 * 179.79170 * 3 2 1 5 5 C 1.38251 * 119.99833 * 0.43904 * 4 3 2 6 6 C 1.38217 * 120.00182 * 359.81849 * 5 4 3 7 7 C 1.38213 * 120.00028 * 180.27908 * 2 1 3 8 8 C 1.50700 * 119.99823 * 359.97263 * 7 2 1 9 9 H 1.09010 * 109.47238 * 35.00624 * 8 7 2 10 10 O 1.42898 * 109.47167 * 155.00132 * 8 7 2 11 11 C 1.53002 * 109.47673 * 275.00436 * 8 7 2 12 12 N 1.46491 * 109.47455 * 179.97438 * 11 8 7 13 13 C 1.34776 * 120.00177 * 179.97438 * 12 11 8 14 14 O 1.21551 * 119.99700 * 0.02562 * 13 12 11 15 15 C 1.47885 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.39918 * 120.02872 * 359.71958 * 15 13 12 17 17 C 1.38325 * 120.36059 * 179.74042 * 16 15 13 18 18 C 1.37753 * 120.41361 * 0.56717 * 17 16 15 19 19 C 1.40756 * 120.03659 * 359.69666 * 18 17 16 20 20 C 1.41429 * 120.17673 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00515 * 334.92274 * 20 19 18 22 22 C 1.39941 * 120.00167 * 154.92461 * 20 19 18 23 23 N 1.30825 * 119.99955 * 342.58681 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 162.58702 * 22 20 19 25 25 H 1.48501 * 109.46961 * 60.00313 * 24 22 20 26 26 H 1.48493 * 109.47073 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46997 * 300.00135 * 24 22 20 28 28 C 1.38995 * 120.02530 * 180.02562 * 15 13 12 29 29 H 1.09003 * 109.46592 * 269.72672 * 1 2 3 30 30 H 1.08999 * 109.46984 * 149.72716 * 1 2 3 31 31 H 1.09000 * 109.46570 * 29.72265 * 1 2 3 32 32 H 1.08001 * 120.00262 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.99687 * 180.27764 * 4 3 2 34 34 H 1.08006 * 119.99800 * 179.83278 * 5 4 3 35 35 H 1.08005 * 119.99938 * 179.97438 * 6 5 4 36 36 H 0.96698 * 113.99722 * 60.00367 * 10 8 7 37 37 H 1.09000 * 109.46410 * 300.00309 * 11 8 7 38 38 H 1.09000 * 109.46756 * 59.99622 * 11 8 7 39 39 H 0.97008 * 119.99920 * 0.02562 * 12 11 8 40 40 H 1.07997 * 119.81908 * 0.02562 * 16 15 13 41 41 H 1.08007 * 119.79466 * 180.28417 * 17 16 15 42 42 H 1.07992 * 119.98574 * 179.72000 * 18 17 16 43 43 H 0.96999 * 120.00490 * 179.97438 * 23 22 20 44 44 H 1.08012 * 120.20067 * 359.94884 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0044 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 -0.0059 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5336 -2.3931 -0.6003 10 8 2.2636 -3.5224 -0.5860 11 6 1.0811 -2.8875 1.4238 12 7 0.3481 -4.1559 1.4181 13 6 -0.0762 -4.6942 2.5785 14 8 0.1489 -4.1270 3.6298 15 6 -0.8157 -5.9749 2.5728 16 6 -1.0803 -6.6252 1.3625 17 6 -1.7668 -7.8261 1.3496 18 6 -2.2080 -8.3898 2.5265 19 6 -1.9560 -7.7474 3.7534 20 6 -2.4072 -8.3238 4.9635 21 1 -3.2539 -8.9942 4.9597 22 6 -1.7564 -8.0256 6.1660 23 7 -0.5552 -7.5075 6.1487 24 14 -2.6028 -8.3673 7.7958 25 1 -2.9057 -9.8172 7.9019 26 1 -1.7093 -7.9648 8.9114 27 1 -3.8665 -7.5908 7.8696 28 6 -1.2541 -6.5302 3.7692 29 1 -0.3632 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3632 0.8925 -0.5095 32 1 1.6584 2.1327 -0.0004 33 1 4.1205 2.1326 0.0089 34 1 5.3518 -0.0001 0.0002 35 1 4.1206 -2.1324 -0.0100 36 1 3.0930 -3.6739 -0.1125 37 1 1.9921 -2.9965 2.0124 38 1 0.4564 -2.1092 1.8619 39 1 0.1687 -4.6087 0.5791 40 1 -0.7427 -6.1896 0.4338 41 1 -1.9620 -8.3225 0.4105 42 1 -2.7472 -9.3253 2.5080 43 1 -0.1042 -7.3004 6.9821 44 1 -1.0557 -6.0296 4.7055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732831940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = -72.029531 kcal Electronic energy + Delta-G solvation = -26193.447051 eV Core-core repulsion = 22459.800713 eV Total energy + Delta-G solvation = -3733.646338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25684 -40.56931 -38.87762 -38.05786 -35.70155 -35.29888 -33.99114 -32.43982 -31.95029 -31.28080 -29.30496 -27.80028 -27.16618 -25.23586 -23.63556 -22.80663 -22.62280 -21.93888 -21.10055 -19.55298 -18.60378 -17.95272 -17.38116 -17.10370 -16.85138 -16.52209 -16.18934 -16.09567 -15.76348 -15.37031 -15.07204 -15.02068 -14.76705 -14.54928 -14.33176 -14.24587 -13.98976 -13.60649 -13.38850 -13.21247 -13.01857 -12.92268 -12.80306 -12.70592 -12.52612 -12.21133 -12.00400 -11.92405 -11.83759 -11.51536 -11.32126 -11.06889 -10.79499 -10.21013 -9.76211 -9.55329 -9.47196 -9.38585 -8.66358 -6.38256 0.33659 0.37184 0.44843 1.01230 1.36098 1.47863 1.50463 2.08280 2.16630 2.19617 2.78393 2.79191 3.33218 3.60527 3.69608 3.74388 3.85808 3.99266 4.01722 4.08847 4.21571 4.40450 4.42503 4.50568 4.59921 4.62761 4.73524 4.78123 4.85725 4.89461 4.91704 5.08787 5.09920 5.18951 5.26781 5.30833 5.38006 5.51802 5.52803 5.58797 5.65041 5.86331 5.92623 6.05065 6.07515 6.28491 6.49143 6.58931 6.67615 6.87848 6.94509 7.28081 8.30448 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.002523 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.983109 B =11095.907933 C =11743.128293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.153 3.847 9 H 0.125 0.875 10 O -0.557 6.557 11 C 0.098 3.902 12 N -0.707 5.707 13 C 0.560 3.440 14 O -0.590 6.590 15 C -0.138 4.138 16 C -0.196 4.196 17 C -0.096 4.096 18 C -0.216 4.216 19 C 0.066 3.934 20 C -0.498 4.498 21 H 0.085 0.915 22 C 0.029 3.971 23 N -0.826 5.826 24 Si 0.983 3.017 25 H -0.252 1.252 26 H -0.272 1.272 27 H -0.261 1.261 28 C -0.131 4.131 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.387 0.613 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.286 0.714 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 14.751 -13.951 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.135 4.135 7 C -0.134 4.134 8 C 0.094 3.906 9 H 0.143 0.857 10 O -0.365 6.365 11 C -0.026 4.026 12 N -0.360 5.360 13 C 0.350 3.650 14 O -0.472 6.472 15 C -0.142 4.142 16 C -0.216 4.216 17 C -0.114 4.114 18 C -0.236 4.236 19 C 0.064 3.936 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.186 4.186 23 N -0.452 5.452 24 Si 0.803 3.197 25 H -0.176 1.176 26 H -0.197 1.197 27 H -0.185 1.185 28 C -0.151 4.151 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.237 0.763 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.714 15.205 -13.512 21.420 hybrid contribution 0.284 -0.307 1.234 1.303 sum 6.998 14.898 -12.277 20.534 Atomic orbital electron populations 1.20971 0.90371 1.03983 1.02800 1.19975 0.96889 0.92716 0.98993 1.21333 0.94831 0.97865 1.00753 1.21517 0.94431 0.99075 0.98755 1.21413 1.01085 0.92231 1.00335 1.21152 0.93319 0.99539 0.99456 1.20248 0.94803 0.94729 1.03576 1.20906 0.94015 0.84216 0.91512 0.85739 1.86600 1.36121 1.56905 1.56885 1.22018 0.96669 0.85777 0.98182 1.45610 1.57424 1.24151 1.08807 1.18745 0.77988 0.84843 0.83379 1.90674 1.59198 1.64130 1.33154 1.19754 1.03455 0.95447 0.95506 1.20849 1.06969 0.98476 0.95280 1.20932 0.97502 0.95353 0.97611 1.21417 1.08361 1.00938 0.92835 1.17955 0.90947 0.90692 0.94008 1.19836 1.14496 1.26407 0.91976 0.89737 1.26865 0.94232 0.92393 1.05105 1.69885 1.11836 1.32350 1.31123 0.85239 0.78870 0.80143 0.75422 1.17570 1.19698 1.18493 1.21441 1.01574 0.95883 0.96224 0.91170 0.90928 0.89711 0.84205 0.83862 0.84041 0.84640 0.76283 0.92287 0.91259 0.74682 0.84739 0.84343 0.87282 0.90327 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.39 71.24 0.67 -1.27 16 2 C -0.09 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 5 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 6 C -0.12 -2.04 9.30 22.27 0.21 -1.83 16 7 C -0.13 -2.56 5.07 -19.87 -0.10 -2.66 16 8 C 0.15 3.06 2.79 29.85 0.08 3.14 16 9 H 0.13 2.29 6.16 -2.38 -0.01 2.28 16 10 O -0.56 -11.03 12.74 -148.98 -1.90 -12.93 16 11 C 0.10 2.61 5.32 86.38 0.46 3.07 16 12 N -0.71 -22.50 5.40 -465.95 -2.52 -25.01 16 13 C 0.56 24.86 7.77 86.80 0.67 25.53 16 14 O -0.59 -30.96 16.33 -3.88 -0.06 -31.02 16 15 C -0.14 -6.61 5.87 -20.13 -0.12 -6.73 16 16 C -0.20 -7.79 9.55 22.70 0.22 -7.57 16 17 C -0.10 -3.84 10.01 22.18 0.22 -3.61 16 18 C -0.22 -10.14 9.78 22.77 0.22 -9.92 16 19 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 20 C -0.50 -27.31 9.05 23.47 0.21 -27.09 16 21 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 22 C 0.03 1.52 5.14 85.26 0.44 1.96 16 23 N -0.83 -46.57 10.97 21.83 0.24 -46.33 16 24 Si 0.98 39.92 29.59 68.60 2.03 41.95 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 27 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 28 C -0.13 -7.33 8.23 23.01 0.19 -7.14 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.08 6.03 -2.39 -0.01 1.07 16 31 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.14 1.86 6.41 -2.91 -0.02 1.84 16 36 H 0.39 5.81 7.32 -74.06 -0.54 5.27 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 39 H 0.41 11.21 6.37 -92.70 -0.59 10.62 16 40 H 0.13 4.12 6.38 -2.91 -0.02 4.11 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.29 14.90 8.30 -92.71 -0.77 14.14 16 44 H 0.10 6.14 5.77 -2.90 -0.02 6.12 16 Total: -1.00 -71.85 368.08 1.52 -70.34 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.08 Total: 40.57 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 3.80 Total: -37.55 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -2.28 Total: -71.35 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.96 Total: -43.95 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -71.85 1.52 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732831940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.693 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds