Wall clock time and date at job start Tue Mar 31 2020 14:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 119.99904 * 2 1 4 4 C 1.38210 * 120.00178 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00106 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99338 * 359.75302 * 5 4 3 7 7 C 1.38213 * 120.00325 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99842 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.47097 * 325.00163 * 8 7 2 10 10 O 1.42891 * 109.47304 * 205.00265 * 8 7 2 11 11 C 1.53005 * 109.47150 * 85.00257 * 8 7 2 12 12 N 1.46499 * 109.46954 * 185.00052 * 11 8 7 13 13 C 1.34778 * 119.99662 * 179.97438 * 12 11 8 14 14 O 1.21541 * 120.00124 * 359.72687 * 13 12 11 15 15 C 1.47892 * 119.99873 * 179.72513 * 13 12 11 16 16 C 1.39924 * 120.02206 * 359.72299 * 15 13 12 17 17 C 1.38329 * 120.35244 * 179.78580 * 16 15 13 18 18 C 1.37753 * 120.41445 * 0.47436 * 17 16 15 19 19 C 1.40751 * 120.03893 * 359.78431 * 18 17 16 20 20 C 1.41440 * 120.17896 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99901 * 150.17762 * 20 19 18 22 22 C 1.39938 * 119.99965 * 330.17804 * 20 19 18 23 23 N 1.30820 * 120.00046 * 161.72819 * 22 20 19 24 24 Si 1.86802 * 119.99835 * 341.73092 * 22 20 19 25 25 H 1.48506 * 109.47067 * 95.41379 * 24 22 20 26 26 H 1.48496 * 109.46827 * 215.41143 * 24 22 20 27 27 H 1.48498 * 109.47152 * 335.40952 * 24 22 20 28 28 C 1.38988 * 120.02259 * 180.02562 * 15 13 12 29 29 H 1.09004 * 109.47032 * 270.01875 * 1 2 3 30 30 H 1.09001 * 109.47836 * 30.01680 * 1 2 3 31 31 H 1.08997 * 109.47518 * 150.02424 * 1 2 3 32 32 H 1.08004 * 119.99775 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00616 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.00386 * 180.02562 * 5 4 3 35 35 H 1.08007 * 119.99434 * 180.27516 * 6 5 4 36 36 H 0.96704 * 114.00189 * 299.99900 * 10 8 7 37 37 H 1.08997 * 109.47169 * 65.00016 * 11 8 7 38 38 H 1.09007 * 109.46891 * 304.99945 * 11 8 7 39 39 H 0.97001 * 120.00071 * 359.72670 * 12 11 8 40 40 H 1.07997 * 119.82120 * 0.02562 * 16 15 13 41 41 H 1.08005 * 119.79070 * 180.23539 * 17 16 15 42 42 H 1.07997 * 119.98312 * 179.76565 * 18 17 16 43 43 H 0.97002 * 120.00312 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.20763 * 359.94984 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0073 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.5341 -2.3954 0.5914 10 8 2.2640 -3.5246 0.5715 11 6 1.0802 -2.8819 -1.4350 12 7 0.2463 -4.0863 -1.4250 13 6 -0.1977 -4.6080 -2.5857 14 8 0.0897 -4.0765 -3.6403 15 6 -1.0346 -5.8274 -2.5761 16 6 -1.3609 -6.4430 -1.3627 17 6 -2.1468 -7.5812 -1.3455 18 6 -2.6092 -8.1273 -2.5226 19 6 -2.2867 -7.5250 -3.7532 20 6 -2.7594 -8.0836 -4.9636 21 1 -2.9499 -7.4461 -5.8143 22 6 -2.9802 -9.4621 -5.0589 23 7 -3.7353 -9.9391 -6.0147 24 14 -2.1967 -10.6212 -3.8210 25 1 -3.1638 -10.9090 -2.7314 26 1 -1.8222 -11.8887 -4.4980 27 1 -0.9813 -9.9874 -3.2498 28 6 -1.4922 -6.3662 -3.7728 29 1 -0.3633 0.0003 1.0277 30 1 -0.3635 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6581 2.1327 0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0001 0.0024 35 1 4.1207 -2.1322 0.0126 36 1 3.0932 -3.6743 0.0969 37 1 1.9909 -3.0752 -2.0018 38 1 0.5304 -2.0630 -1.8989 39 1 0.0166 -4.5102 -0.5834 40 1 -1.0004 -6.0251 -0.4344 41 1 -2.3963 -8.0468 -0.4034 42 1 -3.2191 -9.0183 -2.5012 43 1 -3.8881 -10.8948 -6.0810 44 1 -1.2394 -5.8967 -4.7120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732831941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:19 Heat of formation + Delta-G solvation = -51.857763 kcal Electronic energy + Delta-G solvation = -26044.545859 eV Core-core repulsion = 22311.774234 eV Total energy + Delta-G solvation = -3732.771625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39984 -39.33691 -37.58235 -37.05010 -34.29218 -33.69126 -33.27128 -31.64884 -30.74162 -30.05407 -28.35070 -27.17391 -25.26205 -24.19020 -22.57264 -21.98279 -21.24633 -20.67463 -19.96019 -18.08244 -17.72374 -16.59633 -16.47460 -16.03615 -15.70379 -15.32488 -15.04663 -14.93150 -14.67290 -14.25108 -14.01914 -13.90417 -13.58641 -13.52454 -13.40415 -12.75685 -12.75137 -12.65936 -12.50259 -12.36106 -12.01591 -12.00207 -11.60367 -11.39177 -11.23553 -11.05306 -10.79204 -10.54868 -10.53215 -10.01671 -9.72854 -9.45798 -9.19322 -9.11999 -8.90817 -8.89386 -7.87512 -7.76322 -7.00931 -4.55734 0.96461 1.05457 1.90378 2.51317 3.05320 3.17250 3.25772 3.27785 3.49966 3.60304 3.92957 4.07346 4.36308 4.46653 4.48244 4.52573 4.66260 4.71508 4.86475 4.98077 5.18757 5.28594 5.31870 5.33217 5.38353 5.47408 5.57780 5.68549 5.74501 5.85620 5.88943 6.03221 6.12714 6.17598 6.26574 6.38275 6.59339 6.65729 6.66022 6.69319 6.97216 7.20395 7.24514 7.40184 7.49545 7.74220 7.78510 8.00094 8.27736 8.52598 8.66575 8.71756 10.01223 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002313 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.808641 B =12100.396343 C =12310.107016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.116 4.116 8 C 0.137 3.863 9 H 0.117 0.883 10 O -0.550 6.550 11 C 0.095 3.905 12 N -0.730 5.730 13 C 0.563 3.437 14 O -0.549 6.549 15 C -0.108 4.108 16 C -0.215 4.215 17 C -0.083 4.083 18 C -0.221 4.221 19 C 0.081 3.919 20 C -0.442 4.442 21 H 0.094 0.906 22 C 0.083 3.917 23 N -0.804 5.804 24 Si 0.911 3.089 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.244 1.244 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.376 0.624 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.404 0.596 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.286 0.714 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 16.252 14.254 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.078 3.922 9 H 0.134 0.866 10 O -0.356 6.356 11 C -0.030 4.030 12 N -0.384 5.384 13 C 0.354 3.646 14 O -0.427 6.427 15 C -0.111 4.111 16 C -0.235 4.235 17 C -0.102 4.102 18 C -0.241 4.241 19 C 0.078 3.922 20 C -0.471 4.471 21 H 0.111 0.889 22 C -0.136 4.136 23 N -0.427 5.427 24 Si 0.737 3.263 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.167 1.167 28 C -0.156 4.156 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.241 0.759 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.261 16.419 13.716 24.177 hybrid contribution 0.634 -0.685 0.428 1.028 sum 11.896 15.734 14.144 24.272 Atomic orbital electron populations 1.20960 0.90955 1.03628 1.02780 1.19743 0.96189 0.92420 0.98819 1.21048 0.94313 0.97449 1.00927 1.21174 0.94334 0.98141 0.99706 1.21103 0.99941 0.92375 1.00739 1.20876 0.93354 0.98441 0.99632 1.20233 0.94325 0.94903 1.02228 1.21049 0.93578 0.83895 0.93694 0.86584 1.86637 1.35438 1.56649 1.56877 1.21935 0.96154 0.88822 0.96050 1.45842 1.53693 1.28999 1.09846 1.18810 0.78876 0.84147 0.82791 1.90700 1.58530 1.62391 1.31087 1.19404 1.01397 0.95162 0.95175 1.20406 1.07770 1.00353 0.94957 1.20520 0.97174 0.95606 0.96854 1.21182 1.06923 1.03286 0.92680 1.17706 0.89702 0.91786 0.92997 1.19514 1.36058 0.93128 0.98362 0.88852 1.26169 0.92225 0.99509 0.95725 1.69688 1.26757 1.16114 1.30168 0.86313 0.81925 0.78252 0.79815 1.19540 1.21662 1.16673 1.21272 0.99704 0.98742 0.95874 0.90690 0.91030 0.90882 0.85871 0.86008 0.85923 0.85920 0.77499 0.91243 0.90516 0.75900 0.88494 0.88249 0.87882 0.90316 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.22 36.00 0.33 -0.65 16 2 C -0.07 -0.64 5.88 -104.63 -0.62 -1.26 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 6 C -0.11 -0.90 9.30 -39.58 -0.37 -1.26 16 7 C -0.12 -1.09 5.07 -104.63 -0.53 -1.62 16 8 C 0.14 1.32 2.54 -27.88 -0.07 1.25 16 9 H 0.12 1.08 6.99 -51.93 -0.36 0.71 16 10 O -0.55 -5.40 12.93 -35.23 -0.46 -5.86 16 11 C 0.09 1.15 5.04 -4.04 -0.02 1.13 16 12 N -0.73 -10.67 5.45 -61.23 -0.33 -11.00 16 13 C 0.56 11.00 7.77 -12.31 -0.10 10.91 16 14 O -0.55 -12.34 16.33 5.33 0.09 -12.25 16 15 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 16 C -0.21 -4.16 9.55 -38.92 -0.37 -4.53 16 17 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 18 C -0.22 -5.15 7.17 -38.81 -0.28 -5.43 16 19 C 0.08 2.05 5.10 -106.87 -0.55 1.50 16 20 C -0.44 -11.91 9.57 -37.73 -0.36 -12.27 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 22 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 23 N -0.80 -21.17 13.93 55.55 0.77 -20.40 16 24 Si 0.91 20.37 24.52 -169.99 -4.17 16.21 16 25 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 28 C -0.14 -3.27 9.34 -38.44 -0.36 -3.63 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.61 5.49 -51.93 -0.29 0.33 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 33 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.81 6.40 -52.48 -0.34 0.48 16 36 H 0.38 2.69 7.33 45.56 0.33 3.02 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.98 7.03 -51.93 -0.36 0.61 16 39 H 0.40 5.28 6.49 -40.82 -0.26 5.01 16 40 H 0.10 1.53 6.38 -52.49 -0.33 1.20 16 41 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 43 H 0.29 6.80 8.30 -40.82 -0.34 6.47 16 44 H 0.12 2.83 7.64 -52.49 -0.40 2.43 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.71 361.88 -9.03 -39.73 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.81 Total: 10.96 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -5.57 Total: -22.84 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.44 Total: -31.40 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.37 Total: -18.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.17 Total: 16.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.71 -9.03 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732831941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.124 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds