Wall clock time and date at job start Tue Mar 31 2020 14:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 119.99904 * 2 1 4 4 C 1.38210 * 120.00178 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00106 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99338 * 359.75302 * 5 4 3 7 7 C 1.38213 * 120.00325 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99842 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.47097 * 325.00163 * 8 7 2 10 10 O 1.42891 * 109.47304 * 205.00265 * 8 7 2 11 11 C 1.53005 * 109.47150 * 85.00257 * 8 7 2 12 12 N 1.46499 * 109.46954 * 185.00052 * 11 8 7 13 13 C 1.34778 * 119.99662 * 179.97438 * 12 11 8 14 14 O 1.21541 * 120.00124 * 359.72687 * 13 12 11 15 15 C 1.47892 * 119.99873 * 179.72513 * 13 12 11 16 16 C 1.39924 * 120.02206 * 359.72299 * 15 13 12 17 17 C 1.38329 * 120.35244 * 179.78580 * 16 15 13 18 18 C 1.37753 * 120.41445 * 0.47436 * 17 16 15 19 19 C 1.40751 * 120.03893 * 359.78431 * 18 17 16 20 20 C 1.41440 * 120.17896 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99901 * 150.17762 * 20 19 18 22 22 C 1.39938 * 119.99965 * 330.17804 * 20 19 18 23 23 N 1.30820 * 120.00046 * 161.72819 * 22 20 19 24 24 Si 1.86802 * 119.99835 * 341.73092 * 22 20 19 25 25 H 1.48506 * 109.47067 * 95.41379 * 24 22 20 26 26 H 1.48496 * 109.46827 * 215.41143 * 24 22 20 27 27 H 1.48498 * 109.47152 * 335.40952 * 24 22 20 28 28 C 1.38988 * 120.02259 * 180.02562 * 15 13 12 29 29 H 1.09004 * 109.47032 * 270.01875 * 1 2 3 30 30 H 1.09001 * 109.47836 * 30.01680 * 1 2 3 31 31 H 1.08997 * 109.47518 * 150.02424 * 1 2 3 32 32 H 1.08004 * 119.99775 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00616 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.00386 * 180.02562 * 5 4 3 35 35 H 1.08007 * 119.99434 * 180.27516 * 6 5 4 36 36 H 0.96704 * 114.00189 * 299.99900 * 10 8 7 37 37 H 1.08997 * 109.47169 * 65.00016 * 11 8 7 38 38 H 1.09007 * 109.46891 * 304.99945 * 11 8 7 39 39 H 0.97001 * 120.00071 * 359.72670 * 12 11 8 40 40 H 1.07997 * 119.82120 * 0.02562 * 16 15 13 41 41 H 1.08005 * 119.79070 * 180.23539 * 17 16 15 42 42 H 1.07997 * 119.98312 * 179.76565 * 18 17 16 43 43 H 0.97002 * 120.00312 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.20763 * 359.94984 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0073 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.5341 -2.3954 0.5914 10 8 2.2640 -3.5246 0.5715 11 6 1.0802 -2.8819 -1.4350 12 7 0.2463 -4.0863 -1.4250 13 6 -0.1977 -4.6080 -2.5857 14 8 0.0897 -4.0765 -3.6403 15 6 -1.0346 -5.8274 -2.5761 16 6 -1.3609 -6.4430 -1.3627 17 6 -2.1468 -7.5812 -1.3455 18 6 -2.6092 -8.1273 -2.5226 19 6 -2.2867 -7.5250 -3.7532 20 6 -2.7594 -8.0836 -4.9636 21 1 -2.9499 -7.4461 -5.8143 22 6 -2.9802 -9.4621 -5.0589 23 7 -3.7353 -9.9391 -6.0147 24 14 -2.1967 -10.6212 -3.8210 25 1 -3.1638 -10.9090 -2.7314 26 1 -1.8222 -11.8887 -4.4980 27 1 -0.9813 -9.9874 -3.2498 28 6 -1.4922 -6.3662 -3.7728 29 1 -0.3633 0.0003 1.0277 30 1 -0.3635 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6581 2.1327 0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0001 0.0024 35 1 4.1207 -2.1322 0.0126 36 1 3.0932 -3.6743 0.0969 37 1 1.9909 -3.0752 -2.0018 38 1 0.5304 -2.0630 -1.8989 39 1 0.0166 -4.5102 -0.5834 40 1 -1.0004 -6.0251 -0.4344 41 1 -2.3963 -8.0468 -0.4034 42 1 -3.2191 -9.0183 -2.5012 43 1 -3.8881 -10.8948 -6.0810 44 1 -1.2394 -5.8967 -4.7120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732831941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:18 Heat of formation + Delta-G solvation = -72.339128 kcal Electronic energy + Delta-G solvation = -26045.433998 eV Core-core repulsion = 22311.774234 eV Total energy + Delta-G solvation = -3733.659763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31000 -40.63381 -39.09369 -38.07140 -35.67900 -35.38685 -33.98823 -32.64532 -32.16754 -31.76696 -29.35588 -27.81676 -27.06527 -25.33155 -23.92585 -22.67864 -22.43588 -22.01938 -21.42225 -19.69266 -18.55094 -18.11277 -17.41586 -17.28841 -17.10515 -16.49283 -16.26451 -16.12421 -15.79122 -15.43041 -15.24633 -15.03064 -14.76406 -14.58327 -14.46321 -14.39142 -13.98695 -13.86283 -13.52358 -13.33857 -13.15543 -13.05773 -12.84377 -12.68012 -12.64554 -12.31817 -12.00814 -11.88313 -11.75996 -11.58097 -11.35597 -11.17085 -10.83630 -10.24394 -9.75797 -9.63181 -9.56074 -9.52899 -8.91774 -6.55605 0.17046 0.34143 0.45919 0.74012 1.25615 1.41684 1.48643 1.93651 2.10477 2.12854 2.64741 2.78622 3.35394 3.45173 3.61060 3.72873 3.86334 3.94490 4.03469 4.06557 4.21532 4.26442 4.40281 4.41677 4.49503 4.56066 4.65294 4.75076 4.77472 4.86587 4.88678 4.91570 4.93307 5.11343 5.15455 5.27795 5.32942 5.42088 5.53561 5.59964 5.64693 5.64936 5.71579 5.84427 6.08112 6.10166 6.29602 6.52913 6.62982 6.65726 6.73910 7.20015 8.17231 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002313 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.808641 B =12100.396343 C =12310.107016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.121 4.121 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.154 3.846 9 H 0.124 0.876 10 O -0.557 6.557 11 C 0.095 3.905 12 N -0.704 5.704 13 C 0.562 3.438 14 O -0.586 6.586 15 C -0.113 4.113 16 C -0.181 4.181 17 C -0.082 4.082 18 C -0.224 4.224 19 C 0.064 3.936 20 C -0.488 4.488 21 H 0.050 0.950 22 C 0.044 3.956 23 N -0.849 5.849 24 Si 0.968 3.032 25 H -0.246 1.246 26 H -0.278 1.278 27 H -0.252 1.252 28 C -0.166 4.166 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.388 0.612 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.416 0.584 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.107 0.893 43 H 0.295 0.705 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 16.736 18.787 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.133 4.133 7 C -0.133 4.133 8 C 0.094 3.906 9 H 0.141 0.859 10 O -0.365 6.365 11 C -0.028 4.028 12 N -0.357 5.357 13 C 0.351 3.649 14 O -0.468 6.468 15 C -0.116 4.116 16 C -0.201 4.201 17 C -0.100 4.100 18 C -0.244 4.244 19 C 0.062 3.938 20 C -0.518 4.518 21 H 0.068 0.932 22 C -0.170 4.170 23 N -0.475 5.475 24 Si 0.790 3.210 25 H -0.171 1.171 26 H -0.204 1.204 27 H -0.175 1.175 28 C -0.187 4.187 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.809 16.920 18.294 28.018 hybrid contribution 0.279 -0.569 -0.818 1.034 sum 13.088 16.351 17.476 27.278 Atomic orbital electron populations 1.20974 0.90387 1.03515 1.03390 1.19976 0.96854 0.92737 0.98957 1.21324 0.94834 0.97901 1.00850 1.21511 0.94431 0.99102 0.98800 1.21417 1.01076 0.92265 1.00351 1.21160 0.93306 0.99519 0.99359 1.20263 0.94790 0.94723 1.03568 1.20850 0.93990 0.84104 0.91622 0.85898 1.86611 1.36153 1.56590 1.57153 1.22097 0.95266 0.87306 0.98178 1.45629 1.52410 1.29069 1.08636 1.18603 0.78933 0.83749 0.83581 1.90692 1.59979 1.63311 1.32820 1.19677 1.01041 0.95866 0.94999 1.21004 1.04567 0.98700 0.95796 1.21047 0.95964 0.95439 0.97565 1.21390 1.06738 1.03349 0.92875 1.17788 0.90191 0.92464 0.93364 1.19450 1.40027 0.93882 0.98405 0.93221 1.26910 0.92243 1.00231 0.97618 1.69721 1.28553 1.16962 1.32234 0.85463 0.80894 0.76418 0.78260 1.17081 1.20426 1.17513 1.21196 1.01472 0.99560 0.96458 0.89670 0.90402 0.91741 0.84394 0.84036 0.84085 0.84426 0.76183 0.91693 0.91070 0.74495 0.83452 0.83479 0.87561 0.89435 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.22 71.23 0.66 -1.07 16 2 C -0.09 -1.38 5.88 -19.87 -0.12 -1.50 16 3 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 5 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 6 C -0.12 -1.72 9.30 22.27 0.21 -1.51 16 7 C -0.13 -2.21 5.07 -19.87 -0.10 -2.31 16 8 C 0.15 2.56 2.54 29.85 0.08 2.64 16 9 H 0.12 1.89 6.99 -2.38 -0.02 1.87 16 10 O -0.56 -9.11 12.93 -148.98 -1.93 -11.04 16 11 C 0.10 2.13 5.04 86.38 0.44 2.57 16 12 N -0.70 -18.63 5.45 -465.92 -2.54 -21.17 16 13 C 0.56 21.30 7.77 86.80 0.67 21.98 16 14 O -0.59 -26.80 16.33 -3.85 -0.06 -26.86 16 15 C -0.11 -4.66 5.87 -20.13 -0.12 -4.77 16 16 C -0.18 -6.17 9.55 22.70 0.22 -5.95 16 17 C -0.08 -2.97 10.01 22.18 0.22 -2.75 16 18 C -0.22 -10.05 7.17 22.77 0.16 -9.89 16 19 C 0.06 3.35 5.10 -21.32 -0.11 3.24 16 20 C -0.49 -28.23 9.57 23.47 0.22 -28.01 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C 0.04 2.40 5.40 85.26 0.46 2.86 16 23 N -0.85 -47.05 13.93 21.82 0.30 -46.74 16 24 Si 0.97 41.84 24.52 68.60 1.68 43.52 16 25 H -0.25 -9.65 6.71 99.48 0.67 -8.98 16 26 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.25 -11.06 6.86 99.48 0.68 -10.38 16 28 C -0.17 -8.33 9.34 23.01 0.21 -8.12 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.06 0.98 5.49 -2.39 -0.01 0.96 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.14 1.48 6.40 -2.91 -0.02 1.47 16 36 H 0.39 4.35 7.33 -74.05 -0.54 3.81 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.73 7.03 -2.38 -0.02 1.71 16 39 H 0.42 8.94 6.49 -92.71 -0.60 8.34 16 40 H 0.15 3.59 6.38 -2.91 -0.02 3.57 16 41 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.11 4.68 4.72 -2.91 -0.01 4.67 16 43 H 0.30 14.57 8.30 -92.71 -0.77 13.80 16 44 H 0.09 4.79 7.64 -2.91 -0.02 4.77 16 Total: -1.00 -71.23 361.88 1.08 -70.16 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.15 Total: 29.36 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.77 Total: -37.23 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -2.24 Total: -67.92 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.99 Total: -37.90 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.68 Total: 43.52 kcal Total: -71.23 1.08 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732831941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.181 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds