Wall clock time and date at job start Tue Mar 31 2020 14:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38294 * 119.91879 * 2 1 4 4 C 1.38103 * 120.07014 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.92449 * 0.02562 * 4 3 2 6 6 N 1.39738 * 120.07523 * 180.02562 * 5 4 3 7 7 C 1.38892 * 120.00299 * 182.10564 * 6 5 4 8 8 C 1.38965 * 120.17638 * 261.16627 * 7 6 5 9 9 C 1.37948 * 120.06588 * 179.70504 * 8 7 6 10 10 C 1.38632 * 120.43724 * 0.26675 * 9 8 7 11 11 C 1.37733 * 120.36130 * 0.03201 * 10 9 8 12 12 C 1.39790 * 119.92409 * 359.96751 * 11 10 9 13 13 C 1.47286 * 120.21728 * 180.02562 * 12 11 10 14 14 O 1.21531 * 120.00301 * 185.51895 * 13 12 11 15 15 O 1.34771 * 120.00005 * 5.51201 * 13 12 11 16 16 C 1.45207 * 116.99860 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47294 * 30.00176 * 16 15 13 18 18 C 1.53007 * 109.46764 * 270.00005 * 16 15 13 19 19 C 1.50699 * 109.46976 * 150.00588 * 16 15 13 20 20 H 1.08006 * 120.00060 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00264 * 179.97438 * 19 16 15 22 22 N 1.31521 * 119.99761 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00226 * 179.97438 * 21 19 16 24 24 H 1.48491 * 109.47497 * 60.00191 * 23 21 19 25 25 H 1.48499 * 109.47103 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47200 * 299.99839 * 23 21 19 27 27 C 1.38919 * 119.85219 * 0.26936 * 5 4 3 28 28 C 1.38093 * 119.92438 * 359.45514 * 27 5 4 29 29 H 1.09000 * 109.46840 * 90.00951 * 1 2 3 30 30 H 1.09006 * 109.47204 * 210.00094 * 1 2 3 31 31 H 1.08995 * 109.47697 * 330.00182 * 1 2 3 32 32 H 1.07995 * 119.96417 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.03536 * 180.02562 * 4 3 2 34 34 H 0.96996 * 119.99672 * 2.10438 * 6 5 4 35 35 H 1.07997 * 119.97153 * 359.97140 * 8 7 6 36 36 H 1.08000 * 119.78463 * 180.25409 * 9 8 7 37 37 H 1.08001 * 119.82508 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.04065 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46910 * 180.02562 * 18 16 15 40 40 H 1.08999 * 109.47354 * 300.00134 * 18 16 15 41 41 H 1.08998 * 109.47032 * 60.00508 * 18 16 15 42 42 H 0.96996 * 119.99973 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.03675 * 179.70517 * 27 5 4 44 44 H 1.08004 * 119.96567 * 180.29515 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2023 0.0005 5 6 4.2740 0.0002 0.0005 6 7 5.6713 0.0002 0.0016 7 6 6.3659 -1.2018 -0.0426 8 6 6.8741 -1.7583 1.1250 9 6 7.5583 -2.9552 1.0793 10 6 7.7496 -3.6092 -0.1280 11 6 7.2589 -3.0706 -1.2969 12 6 6.5632 -1.8584 -1.2680 13 6 6.0352 -1.2770 -2.5140 14 8 5.5197 -0.1765 -2.5003 15 8 6.1239 -1.9652 -3.6693 16 6 5.5830 -1.3303 -4.8580 17 1 5.6703 -0.2480 -4.7635 18 6 4.1095 -1.7115 -5.0140 19 6 6.3523 -1.7927 -6.0685 20 1 7.1666 -2.4932 -5.9558 21 6 6.0168 -1.3214 -7.3200 22 7 5.0249 -0.4687 -7.4574 23 14 6.9708 -1.8939 -8.8205 24 1 6.8529 -3.3685 -8.9491 25 1 6.4177 -1.2447 -10.0361 26 1 8.4008 -1.5229 -8.6690 27 6 3.5779 -1.2020 -0.0057 28 6 2.1970 -1.1985 -0.0004 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6549 2.1328 -0.0004 33 1 4.1159 2.1387 0.0010 34 1 6.1562 0.8396 0.0332 35 1 6.7295 -1.2554 2.0697 36 1 7.9477 -3.3856 1.9901 37 1 8.2864 -4.5460 -0.1523 38 1 7.4112 -3.5843 -2.2346 39 1 3.7035 -1.2353 -5.9066 40 1 4.0221 -2.7939 -5.1085 41 1 3.5530 -1.3772 -4.1385 42 1 4.7885 -0.1374 -8.3378 43 1 4.1161 -2.1383 -0.0105 44 1 1.6551 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:40 Heat of formation + Delta-G solvation = -29.665677 kcal Electronic energy + Delta-G solvation = -27344.161009 eV Core-core repulsion = 23612.351705 eV Total energy + Delta-G solvation = -3731.809304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40842 -39.04124 -38.35630 -35.88802 -35.21349 -33.23897 -31.74046 -31.38288 -30.65591 -29.48457 -29.07466 -25.78786 -25.29851 -24.09069 -22.95143 -22.11562 -21.43912 -20.58059 -19.69313 -17.67274 -17.35585 -16.96905 -16.56563 -15.79727 -15.15931 -15.10104 -14.90783 -14.81342 -14.50646 -14.18730 -13.86803 -13.66270 -13.58515 -13.18950 -12.97651 -12.53645 -12.37969 -12.22804 -12.05947 -11.92240 -11.70230 -11.45588 -11.21602 -11.19742 -11.03598 -10.81956 -10.70783 -10.37180 -10.27114 -10.11810 -9.50006 -9.40384 -9.02739 -8.88962 -8.84550 -8.66921 -8.47295 -7.19062 -6.16858 -4.24058 0.80985 1.22281 1.69652 1.83596 3.09095 3.26427 3.29784 3.31978 3.48737 3.65401 3.92444 4.11125 4.34065 4.84013 4.90305 5.02689 5.09256 5.14261 5.15914 5.27540 5.37143 5.39972 5.46555 5.62060 5.66338 5.75320 5.87724 5.93403 5.94551 6.12145 6.20669 6.25641 6.35264 6.40280 6.56290 6.63033 6.68275 6.73184 6.91563 6.94119 6.95952 7.11541 7.19953 7.60997 7.63414 7.75518 7.82493 7.96254 8.16205 8.66375 8.90404 9.41227 10.90426 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010501 B = 0.004280 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.862757 B = 6540.585321 C = 8489.799512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.148 4.148 3 C -0.075 4.075 4 C -0.178 4.178 5 C 0.235 3.765 6 N -0.691 5.691 7 C 0.201 3.799 8 C -0.136 4.136 9 C -0.089 4.089 10 C -0.134 4.134 11 C -0.058 4.058 12 C -0.118 4.118 13 C 0.491 3.509 14 O -0.497 6.497 15 O -0.355 6.355 16 C 0.220 3.780 17 H 0.045 0.955 18 C -0.153 4.153 19 C -0.522 4.522 20 H 0.067 0.933 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.911 3.089 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.185 4.185 28 C -0.074 4.074 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.409 0.591 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.016 0.984 42 H 0.266 0.734 43 H 0.114 0.886 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -2.284 19.021 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.150 4.150 3 C -0.094 4.094 4 C -0.200 4.200 5 C 0.135 3.865 6 N -0.318 5.318 7 C 0.107 3.893 8 C -0.156 4.156 9 C -0.108 4.108 10 C -0.152 4.152 11 C -0.077 4.077 12 C -0.121 4.121 13 C 0.334 3.666 14 O -0.386 6.386 15 O -0.271 6.271 16 C 0.168 3.832 17 H 0.063 0.937 18 C -0.210 4.210 19 C -0.560 4.560 20 H 0.086 0.914 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.738 3.262 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.207 4.207 28 C -0.093 4.093 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.908 -1.988 18.800 18.927 hybrid contribution 0.678 0.124 -1.072 1.275 sum -0.230 -1.864 17.728 17.828 Atomic orbital electron populations 1.20636 0.91759 1.01797 1.01789 1.19612 0.95671 0.93102 1.06633 1.20679 0.93257 0.97222 0.98253 1.20467 0.94266 0.96012 1.09304 1.17580 0.82193 0.93895 0.92842 1.41438 1.02697 1.05627 1.82042 1.17355 0.93400 0.87635 0.90871 1.21389 1.00190 0.96535 0.97445 1.21220 0.96987 0.94378 0.98186 1.21192 1.01077 1.00696 0.92195 1.21574 0.93337 0.93191 0.99577 1.20034 1.02779 0.97375 0.91911 1.20769 0.77109 0.83885 0.84863 1.90799 1.40742 1.20329 1.86757 1.86536 1.73926 1.49225 1.17446 1.20589 0.91064 0.94182 0.77411 0.93714 1.22135 0.97308 1.00039 1.01550 1.20983 1.17098 1.27967 0.89910 0.91444 1.24879 0.95345 0.94777 0.98909 1.69899 1.27876 1.30717 1.24122 0.86342 0.79908 0.78959 0.80970 1.19929 1.21019 1.20017 1.20579 0.94424 0.96277 1.09408 1.20693 0.93269 0.97285 0.98040 0.91835 0.92267 0.92260 0.86451 0.86401 0.75323 0.85157 0.85396 0.85171 0.83847 0.88333 0.94594 0.96489 0.92366 0.86817 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.15 -2.09 5.88 -104.58 -0.62 -2.71 16 3 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 4 C -0.18 -2.68 9.90 -39.38 -0.39 -3.07 16 5 C 0.24 3.75 5.28 -83.75 -0.44 3.31 16 6 N -0.69 -10.21 3.90 -8.23 -0.03 -10.24 16 7 C 0.20 2.92 4.42 -83.57 -0.37 2.56 16 8 C -0.14 -1.52 9.96 -39.42 -0.39 -1.92 16 9 C -0.09 -0.86 10.03 -39.54 -0.40 -1.26 16 10 C -0.13 -1.43 10.02 -39.62 -0.40 -1.83 16 11 C -0.06 -0.83 9.61 -39.19 -0.38 -1.20 16 12 C -0.12 -2.00 5.64 -104.82 -0.59 -2.60 16 13 C 0.49 10.75 7.82 34.41 0.27 11.02 16 14 O -0.50 -11.83 13.30 -19.29 -0.26 -12.09 16 15 O -0.35 -8.66 9.13 -40.68 -0.37 -9.03 16 16 C 0.22 6.04 2.57 -27.88 -0.07 5.96 16 17 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 18 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 19 C -0.52 -14.82 8.90 -34.44 -0.31 -15.12 16 20 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 23 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.18 -2.98 9.28 -39.38 -0.37 -3.34 16 28 C -0.07 -1.10 9.69 -39.61 -0.38 -1.49 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.41 5.44 8.83 -40.82 -0.36 5.08 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 2.08 7.62 -52.48 -0.40 1.68 16 39 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.11 1.83 6.83 -52.49 -0.36 1.48 16 44 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -32.20 373.40 -10.02 -42.23 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.00 Total: 8.16 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -4.60 Total: -15.91 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.60 Total: -35.20 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.63 Total: -21.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.20 -10.02 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.559 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds