Wall clock time and date at job start Tue Mar 31 2020 14:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38294 * 119.91879 * 2 1 4 4 C 1.38103 * 120.07014 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.92449 * 0.02562 * 4 3 2 6 6 N 1.39738 * 120.07523 * 180.02562 * 5 4 3 7 7 C 1.38892 * 120.00299 * 182.10564 * 6 5 4 8 8 C 1.38965 * 120.17638 * 261.16627 * 7 6 5 9 9 C 1.37948 * 120.06588 * 179.70504 * 8 7 6 10 10 C 1.38632 * 120.43724 * 0.26675 * 9 8 7 11 11 C 1.37733 * 120.36130 * 0.03201 * 10 9 8 12 12 C 1.39790 * 119.92409 * 359.96751 * 11 10 9 13 13 C 1.47286 * 120.21728 * 180.02562 * 12 11 10 14 14 O 1.21531 * 120.00301 * 185.51895 * 13 12 11 15 15 O 1.34771 * 120.00005 * 5.51201 * 13 12 11 16 16 C 1.45207 * 116.99860 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47294 * 30.00176 * 16 15 13 18 18 C 1.53007 * 109.46764 * 270.00005 * 16 15 13 19 19 C 1.50699 * 109.46976 * 150.00588 * 16 15 13 20 20 H 1.08006 * 120.00060 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00264 * 179.97438 * 19 16 15 22 22 N 1.31521 * 119.99761 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00226 * 179.97438 * 21 19 16 24 24 H 1.48491 * 109.47497 * 60.00191 * 23 21 19 25 25 H 1.48499 * 109.47103 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47200 * 299.99839 * 23 21 19 27 27 C 1.38919 * 119.85219 * 0.26936 * 5 4 3 28 28 C 1.38093 * 119.92438 * 359.45514 * 27 5 4 29 29 H 1.09000 * 109.46840 * 90.00951 * 1 2 3 30 30 H 1.09006 * 109.47204 * 210.00094 * 1 2 3 31 31 H 1.08995 * 109.47697 * 330.00182 * 1 2 3 32 32 H 1.07995 * 119.96417 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.03536 * 180.02562 * 4 3 2 34 34 H 0.96996 * 119.99672 * 2.10438 * 6 5 4 35 35 H 1.07997 * 119.97153 * 359.97140 * 8 7 6 36 36 H 1.08000 * 119.78463 * 180.25409 * 9 8 7 37 37 H 1.08001 * 119.82508 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.04065 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46910 * 180.02562 * 18 16 15 40 40 H 1.08999 * 109.47354 * 300.00134 * 18 16 15 41 41 H 1.08998 * 109.47032 * 60.00508 * 18 16 15 42 42 H 0.96996 * 119.99973 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.03675 * 179.70517 * 27 5 4 44 44 H 1.08004 * 119.96567 * 180.29515 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2023 0.0005 5 6 4.2740 0.0002 0.0005 6 7 5.6713 0.0002 0.0016 7 6 6.3659 -1.2018 -0.0426 8 6 6.8741 -1.7583 1.1250 9 6 7.5583 -2.9552 1.0793 10 6 7.7496 -3.6092 -0.1280 11 6 7.2589 -3.0706 -1.2969 12 6 6.5632 -1.8584 -1.2680 13 6 6.0352 -1.2770 -2.5140 14 8 5.5197 -0.1765 -2.5003 15 8 6.1239 -1.9652 -3.6693 16 6 5.5830 -1.3303 -4.8580 17 1 5.6703 -0.2480 -4.7635 18 6 4.1095 -1.7115 -5.0140 19 6 6.3523 -1.7927 -6.0685 20 1 7.1666 -2.4932 -5.9558 21 6 6.0168 -1.3214 -7.3200 22 7 5.0249 -0.4687 -7.4574 23 14 6.9708 -1.8939 -8.8205 24 1 6.8529 -3.3685 -8.9491 25 1 6.4177 -1.2447 -10.0361 26 1 8.4008 -1.5229 -8.6690 27 6 3.5779 -1.2020 -0.0057 28 6 2.1970 -1.1985 -0.0004 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6549 2.1328 -0.0004 33 1 4.1159 2.1387 0.0010 34 1 6.1562 0.8396 0.0332 35 1 6.7295 -1.2554 2.0697 36 1 7.9477 -3.3856 1.9901 37 1 8.2864 -4.5460 -0.1523 38 1 7.4112 -3.5843 -2.2346 39 1 3.7035 -1.2353 -5.9066 40 1 4.0221 -2.7939 -5.1085 41 1 3.5530 -1.3772 -4.1385 42 1 4.7885 -0.1374 -8.3378 43 1 4.1161 -2.1383 -0.0105 44 1 1.6551 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:39 Heat of formation + Delta-G solvation = -45.745244 kcal Electronic energy + Delta-G solvation = -27344.858272 eV Core-core repulsion = 23612.351705 eV Total energy + Delta-G solvation = -3732.506566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73197 -40.48412 -39.56802 -37.50450 -36.54998 -35.32912 -32.77011 -32.62984 -31.79043 -31.42387 -30.15614 -27.50485 -26.82805 -25.45508 -24.04079 -23.49208 -22.81597 -21.86624 -21.28888 -19.20158 -18.52750 -18.46409 -18.24636 -17.46100 -16.69641 -16.62014 -16.25013 -16.10956 -15.84353 -15.42793 -14.98482 -14.79282 -14.67690 -14.57385 -14.32227 -14.23090 -13.93421 -13.49615 -13.37397 -13.15559 -13.05313 -12.95731 -12.84590 -12.84059 -12.43717 -12.40984 -12.25219 -12.18718 -11.80461 -11.60723 -11.50234 -11.03298 -10.80709 -10.62282 -10.06667 -9.85409 -9.82752 -8.32840 -8.30130 -6.48893 -0.33146 0.24882 0.53530 0.70418 1.39199 1.43704 1.51782 1.68178 1.98158 2.38596 2.42512 2.75374 2.96902 2.99293 3.79111 3.91373 3.94117 4.08678 4.11081 4.20249 4.34179 4.38903 4.42956 4.47595 4.53702 4.56488 4.73055 4.77421 4.84082 4.87465 4.90038 4.94653 5.09962 5.14562 5.21548 5.28657 5.34869 5.41431 5.43950 5.45126 5.51593 5.58099 5.78001 5.80484 5.87697 6.03499 6.05772 6.50188 6.56552 6.73579 6.97017 7.23527 8.76685 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010501 B = 0.004280 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.862757 B = 6540.585321 C = 8489.799512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.196 4.196 5 C 0.220 3.780 6 N -0.692 5.692 7 C 0.192 3.808 8 C -0.130 4.130 9 C -0.063 4.063 10 C -0.122 4.122 11 C -0.069 4.069 12 C -0.155 4.155 13 C 0.483 3.517 14 O -0.527 6.527 15 O -0.363 6.363 16 C 0.225 3.775 17 H 0.002 0.998 18 C -0.136 4.136 19 C -0.550 4.550 20 H 0.068 0.932 21 C 0.017 3.983 22 N -0.917 5.917 23 Si 0.985 3.015 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.268 1.268 27 C -0.205 4.205 28 C -0.087 4.087 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.014 0.986 42 H 0.271 0.729 43 H 0.107 0.893 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -3.890 20.731 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.160 4.160 3 C -0.102 4.102 4 C -0.218 4.218 5 C 0.119 3.881 6 N -0.320 5.320 7 C 0.099 3.901 8 C -0.149 4.149 9 C -0.082 4.082 10 C -0.139 4.139 11 C -0.088 4.088 12 C -0.158 4.158 13 C 0.329 3.671 14 O -0.419 6.419 15 O -0.280 6.280 16 C 0.172 3.828 17 H 0.020 0.980 18 C -0.194 4.194 19 C -0.587 4.587 20 H 0.086 0.914 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.193 1.193 27 C -0.227 4.227 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.048 -3.602 20.539 20.852 hybrid contribution 0.399 0.629 -1.465 1.643 sum 0.446 -2.973 19.074 19.309 Atomic orbital electron populations 1.20671 0.89491 1.03438 1.02092 1.20023 0.97457 0.92738 1.05734 1.21052 0.93152 0.98435 0.97517 1.20757 0.95064 0.96283 1.09697 1.17789 0.82844 0.94230 0.93204 1.41484 1.02472 1.06113 1.81899 1.17624 0.93800 0.87610 0.91112 1.21685 0.99272 0.97054 0.96893 1.21776 0.94147 0.92800 0.99433 1.21572 0.99783 1.01585 0.90981 1.21612 0.93852 0.92445 1.00890 1.19925 1.06114 0.99582 0.90134 1.21751 0.76375 0.83627 0.85361 1.90761 1.42399 1.21635 1.87067 1.86521 1.74285 1.49406 1.17784 1.20245 0.91786 0.91902 0.78877 0.98001 1.21927 0.96748 1.00152 1.00528 1.21257 1.17804 1.28828 0.90841 0.91410 1.25867 0.96115 0.94374 1.01954 1.70026 1.29017 1.31306 1.25158 0.85211 0.78434 0.78996 0.76640 1.18652 1.20105 1.19272 1.20675 0.95154 0.96146 1.10705 1.20999 0.93096 0.98514 0.97939 0.92052 0.90859 0.90483 0.84164 0.85438 0.75068 0.82703 0.80670 0.81554 0.85096 0.90032 0.93779 0.96669 0.91957 0.87509 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 10.01 71.24 0.71 -1.37 16 2 C -0.16 -4.41 5.88 -19.84 -0.12 -4.52 16 3 C -0.08 -2.35 9.69 22.25 0.22 -2.13 16 4 C -0.20 -6.06 9.90 22.40 0.22 -5.84 16 5 C 0.22 7.27 5.28 38.21 0.20 7.47 16 6 N -0.69 -21.13 3.90 -179.96 -0.70 -21.83 16 7 C 0.19 5.58 4.42 38.73 0.17 5.75 16 8 C -0.13 -2.56 9.96 22.38 0.22 -2.33 16 9 C -0.06 -0.94 10.03 22.30 0.22 -0.71 16 10 C -0.12 -2.20 10.02 22.24 0.22 -1.98 16 11 C -0.07 -1.95 9.61 22.53 0.22 -1.73 16 12 C -0.15 -5.41 5.64 -19.99 -0.11 -5.52 16 13 C 0.48 22.52 7.82 70.20 0.55 23.07 16 14 O -0.53 -26.96 13.30 19.74 0.26 -26.70 16 15 O -0.36 -18.81 9.13 -56.82 -0.52 -19.32 16 16 C 0.23 13.07 2.57 29.85 0.08 13.15 16 17 H 0.00 0.14 7.16 -2.39 -0.02 0.13 16 18 C -0.14 -7.49 9.33 71.98 0.67 -6.82 16 19 C -0.55 -32.28 8.90 25.60 0.23 -32.05 16 20 H 0.07 3.87 7.81 -2.91 -0.02 3.84 16 21 C 0.02 0.94 5.30 84.65 0.45 1.39 16 22 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 23 Si 0.98 43.63 29.54 68.60 2.03 45.65 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 C -0.20 -6.81 9.28 22.40 0.21 -6.61 16 28 C -0.09 -2.62 9.69 22.25 0.22 -2.40 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 31 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.41 11.48 8.83 -92.71 -0.82 10.66 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.13 3.92 7.62 -2.91 -0.02 3.90 16 39 H 0.08 4.76 6.07 -2.39 -0.01 4.75 16 40 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.11 3.58 6.83 -2.91 -0.02 3.56 16 44 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -74.57 373.40 6.09 -68.49 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.20 Total: 30.84 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.58 Total: -23.19 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -0.46 Total: -75.77 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -0.26 Total: -46.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -74.57 6.09 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.744 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds