Wall clock time and date at job start Tue Mar 31 2020 14:25:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38257 * 119.99956 * 2 1
4 4 C 1.38216 * 119.99477 * 179.97438 * 3 2 1
5 5 C 1.38261 * 120.00419 * 359.74656 * 4 3 2
6 6 C 1.38215 * 119.99419 * 0.50478 * 5 4 3
7 7 C 1.50703 * 119.99868 * 179.76755 * 6 5 4
8 8 H 1.08999 * 109.46951 * 179.72792 * 7 6 5
9 9 C 1.53004 * 109.46759 * 299.72664 * 7 6 5
10 10 C 1.50699 * 109.47216 * 59.72551 * 7 6 5
11 11 O 1.21293 * 119.99606 * 0.02562 * 10 7 6
12 12 N 1.34769 * 120.00029 * 179.97438 * 10 7 6
13 13 C 1.39927 * 120.00034 * 174.62505 * 12 10 7
14 14 C 1.38963 * 120.03456 * 326.15608 * 13 12 10
15 15 C 1.38154 * 120.06486 * 179.74431 * 14 13 12
16 16 C 1.38167 * 120.14194 * 0.55050 * 15 14 13
17 17 C 1.38913 * 120.06828 * 359.69722 * 16 15 14
18 18 O 1.35753 * 120.03541 * 180.02562 * 17 16 15
19 19 C 1.34830 * 116.99845 * 185.93391 * 18 17 16
20 20 H 1.07993 * 120.00214 * 5.39726 * 19 18 17
21 21 C 1.38659 * 119.99513 * 185.40580 * 19 18 17
22 22 N 1.31557 * 120.00027 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99801 * 179.97438 * 21 19 18
24 24 H 1.48501 * 109.46986 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.46829 * 119.99925 * 23 21 19
26 26 H 1.48492 * 109.47017 * 239.99921 * 23 21 19
27 27 C 1.38713 * 120.03594 * 146.42530 * 13 12 10
28 28 C 1.38214 * 119.99447 * 179.97438 * 2 1 3
29 29 H 1.09007 * 109.46993 * 270.02532 * 1 2 3
30 30 H 1.09006 * 109.46995 * 30.01612 * 1 2 3
31 31 H 1.08997 * 109.47685 * 150.02417 * 1 2 3
32 32 H 1.07989 * 120.00561 * 359.97438 * 3 2 1
33 33 H 1.07999 * 119.99716 * 180.02562 * 4 3 2
34 34 H 1.07992 * 120.00284 * 180.27047 * 5 4 3
35 35 H 1.08999 * 109.47132 * 299.99686 * 9 7 6
36 36 H 1.08999 * 109.47284 * 60.00332 * 9 7 6
37 37 H 1.09006 * 109.46707 * 180.02562 * 9 7 6
38 38 H 0.96995 * 120.00222 * 354.90657 * 12 10 7
39 39 H 1.08000 * 119.96789 * 0.02562 * 14 13 12
40 40 H 1.08004 * 119.93109 * 180.27370 * 15 14 13
41 41 H 1.08001 * 119.96893 * 179.72668 * 16 15 14
42 42 H 0.97006 * 119.99845 * 179.97438 * 22 21 19
43 43 H 1.08001 * 120.06787 * 359.95685 * 27 13 12
44 44 H 1.07999 * 120.00565 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5804 1.1972 0.0005
5 6 4.2717 -0.0001 0.0064
6 6 3.5806 -1.1971 0.0011
7 6 4.3340 -2.5022 0.0022
8 1 3.6256 -3.3306 0.0024
9 6 5.2141 -2.5840 -1.2467
10 6 5.2000 -2.5814 1.2330
11 8 5.2044 -1.6680 2.0310
12 7 5.9685 -3.6675 1.4474
13 6 6.8560 -3.6940 2.5289
14 6 7.4846 -2.5255 2.9418
15 6 8.3568 -2.5500 4.0129
16 6 8.6158 -3.7377 4.6696
17 6 7.9946 -4.9102 4.2585
18 8 8.2492 -6.0767 4.9046
19 6 7.7112 -7.1965 4.3808
20 1 7.1826 -7.1527 3.4401
21 6 7.8367 -8.4044 5.0501
22 7 8.4810 -8.4578 6.1958
23 14 7.0908 -9.9559 4.3247
24 1 6.4236 -9.6299 3.0387
25 1 8.1625 -10.9561 4.0874
26 1 6.0930 -10.5149 5.2718
27 6 7.1135 -4.8879 3.1866
28 6 2.1980 -1.1970 0.0005
29 1 -0.3633 0.0005 1.0277
30 1 -0.3633 0.8899 -0.5141
31 1 -0.3634 -0.8901 -0.5134
32 1 1.6584 2.1326 -0.0004
33 1 4.1205 2.1325 0.0010
34 1 5.3516 -0.0002 0.0112
35 1 4.5877 -2.5268 -2.1370
36 1 5.9225 -1.7556 -1.2470
37 1 5.7587 -3.5283 -1.2462
38 1 5.9095 -4.4291 0.8497
39 1 7.2875 -1.5963 2.4277
40 1 8.8408 -1.6397 4.3347
41 1 9.3016 -3.7545 5.5038
42 1 8.5685 -9.3028 6.6642
43 1 6.6290 -5.7981 2.8653
44 1 1.6580 -2.1323 0.0005
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000739516640.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:25:34
Heat of formation + Delta-G solvation = -19.617130 kcal
Electronic energy + Delta-G solvation = -26190.317797 eV
Core-core repulsion = 22458.944231 eV
Total energy + Delta-G solvation = -3731.373566 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.64721 -39.39039 -38.52637 -36.47962 -34.64292 -34.20454 -32.43728 -32.22902
-30.12901 -29.18874 -28.45060 -26.99413 -25.40767 -24.91580 -22.76107 -22.12694
-21.82333 -20.73670 -19.57124 -17.94763 -17.72492 -16.90971 -16.65916 -15.77392
-15.62609 -15.09828 -14.97194 -14.81601 -14.31578 -14.17993 -13.95452 -13.77375
-13.69366 -13.53940 -13.20519 -12.98997 -12.84758 -12.51038 -12.42173 -12.34614
-11.95845 -11.81019 -11.71961 -11.53171 -11.15982 -11.10421 -11.04191 -10.92069
-10.80374 -10.45741 -9.83896 -9.61964 -9.39140 -8.90067 -8.82400 -8.67035
-7.73903 -7.16495 -6.46279 -4.05942 1.21977 1.30788 1.95640 2.36408
2.85278 3.10511 3.11086 3.16544 3.20970 3.71070 3.94383 4.31593
4.52487 4.57922 4.72095 4.83484 4.87182 4.96969 5.04118 5.08923
5.17356 5.26974 5.30982 5.37646 5.38118 5.52532 5.56399 5.61746
5.70815 5.82871 5.91709 5.97885 6.00754 6.07025 6.24314 6.27208
6.37141 6.44122 6.50346 6.62620 6.89683 6.96944 6.98433 7.11530
7.30038 7.41077 7.69052 7.80410 7.97929 8.31365 8.99175 9.69839
10.71885
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.017060 B = 0.002632 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1640.842090 B =10634.009554 C =11499.118571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.092 4.092
3 C -0.121 4.121
4 C -0.118 4.118
5 C -0.088 4.088
6 C -0.062 4.062
7 C -0.071 4.071
8 H 0.105 0.895
9 C -0.141 4.141
10 C 0.514 3.486
11 O -0.509 6.509
12 N -0.669 5.669
13 C 0.181 3.819
14 C -0.205 4.205
15 C -0.063 4.063
16 C -0.201 4.201
17 C 0.168 3.832
18 O -0.176 6.176
19 C -0.391 4.391
20 H 0.090 0.910
21 C 0.039 3.961
22 N -0.862 5.862
23 Si 0.940 3.060
24 H -0.268 1.268
25 H -0.276 1.276
26 H -0.276 1.276
27 C -0.256 4.256
28 C -0.112 4.112
29 H 0.069 0.931
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.118 0.882
33 H 0.121 0.879
34 H 0.119 0.881
35 H 0.070 0.930
36 H 0.064 0.936
37 H 0.066 0.934
38 H 0.406 0.594
39 H 0.117 0.883
40 H 0.115 0.885
41 H 0.118 0.882
42 H 0.269 0.731
43 H 0.130 0.870
44 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.370 13.460 -16.495 24.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.092 4.092
3 C -0.139 4.139
4 C -0.136 4.136
5 C -0.106 4.106
6 C -0.063 4.063
7 C -0.093 4.093
8 H 0.123 0.877
9 C -0.199 4.199
10 C 0.300 3.700
11 O -0.382 6.382
12 N -0.314 5.314
13 C 0.088 3.912
14 C -0.226 4.226
15 C -0.082 4.082
16 C -0.220 4.220
17 C 0.114 3.886
18 O -0.080 6.080
19 C -0.468 4.468
20 H 0.108 0.892
21 C -0.165 4.165
22 N -0.497 5.497
23 Si 0.765 3.235
24 H -0.192 1.192
25 H -0.201 1.201
26 H -0.202 1.202
27 C -0.278 4.278
28 C -0.130 4.130
29 H 0.088 0.912
30 H 0.083 0.917
31 H 0.084 0.916
32 H 0.136 0.864
33 H 0.139 0.861
34 H 0.137 0.863
35 H 0.089 0.911
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.241 0.759
39 H 0.135 0.865
40 H 0.133 0.867
41 H 0.136 0.864
42 H 0.079 0.921
43 H 0.147 0.853
44 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -11.204 13.901 -15.582 23.697
hybrid contribution -0.473 -1.269 -0.544 1.460
sum -11.677 12.631 -16.125 23.578
Atomic orbital electron populations
1.20773 0.91295 1.02539 1.02333 1.19826 0.95928 0.93092 1.00365
1.20997 0.94282 0.97348 1.01273 1.21089 0.94243 0.97938 1.00371
1.20892 0.99856 0.91747 0.98085 1.19256 0.93202 0.93509 1.00285
1.20303 0.97412 0.97424 0.94137 0.87698 1.21806 0.99403 1.02968
0.95676 1.20512 0.79937 0.82279 0.87237 1.90750 1.64496 1.37354
1.45643 1.43494 1.39663 1.19115 1.29089 1.17404 0.90645 0.94468
0.88634 1.20510 1.02559 0.97129 1.02405 1.20524 0.96564 0.96454
0.94645 1.20250 1.06135 0.90930 1.04730 1.19087 0.91562 0.87619
0.90341 1.84022 1.64499 1.11701 1.47752 1.21311 1.36097 0.83438
1.05931 0.89225 1.25284 0.96965 0.98608 0.95674 1.70048 1.38584
1.26859 1.14179 0.85660 0.78687 0.80350 0.78768 1.19200 1.20131
1.20168 1.20819 1.07556 0.97659 1.01739 1.20867 0.93164 0.97681
1.01257 0.91226 0.91693 0.91647 0.86350 0.86143 0.86312 0.91097
0.91674 0.91473 0.75921 0.86477 0.86656 0.86390 0.92061 0.85273
0.86206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16
2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16
3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16
4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16
5 C -0.09 -1.04 7.92 -39.58 -0.31 -1.36 16
6 C -0.06 -0.72 4.40 -104.62 -0.46 -1.18 16
7 C -0.07 -0.75 2.90 -92.92 -0.27 -1.01 16
8 H 0.10 0.90 7.88 -51.93 -0.41 0.49 16
9 C -0.14 -1.15 8.91 37.16 0.33 -0.82 16
10 C 0.51 7.49 6.75 -10.99 -0.07 7.42 16
11 O -0.51 -9.32 12.81 5.55 0.07 -9.25 16
12 N -0.67 -9.93 5.19 -9.88 -0.05 -9.98 16
13 C 0.18 3.46 6.26 -83.72 -0.52 2.93 16
14 C -0.21 -3.94 8.65 -39.34 -0.34 -4.28 16
15 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16
16 C -0.20 -4.34 9.99 -39.36 -0.39 -4.73 16
17 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16
18 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16
19 C -0.39 -10.80 9.44 30.89 0.29 -10.51 16
20 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16
21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16
22 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16
23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16
24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16
27 C -0.26 -5.54 9.04 -39.21 -0.35 -5.90 16
28 C -0.11 -1.19 9.33 -39.58 -0.37 -1.56 16
29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16
31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16
32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16
34 H 0.12 1.41 7.52 -52.49 -0.39 1.01 16
35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16
37 H 0.07 0.47 7.69 -51.93 -0.40 0.08 16
38 H 0.41 4.70 8.40 -40.82 -0.34 4.36 16
39 H 0.12 2.18 6.45 -52.49 -0.34 1.85 16
40 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16
41 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16
42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
43 H 0.13 2.74 5.72 -52.49 -0.30 2.44 16
44 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16
LS Contribution 371.02 15.07 5.59 5.59
Total: -1.00 -33.58 371.02 -8.70 -42.27
By element:
Atomic # 1 Polarization: 14.42 SS G_CDS: -5.78 Total: 8.64 kcal
Atomic # 6 Polarization: -18.79 SS G_CDS: -4.27 Total: -23.05 kcal
Atomic # 7 Polarization: -35.09 SS G_CDS: 0.71 Total: -34.38 kcal
Atomic # 8 Polarization: -14.34 SS G_CDS: 0.07 Total: -14.27 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -33.58 -8.70 -42.27 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739516640.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.654 kcal
(2) G-P(sol) polarization free energy of solvation -33.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds