Wall clock time and date at job start Tue Mar 31 2020 14:25:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38257 * 119.99956 * 2 1
4 4 C 1.38216 * 119.99477 * 179.97438 * 3 2 1
5 5 C 1.38261 * 120.00419 * 359.74656 * 4 3 2
6 6 C 1.38215 * 119.99419 * 0.50478 * 5 4 3
7 7 C 1.50703 * 119.99868 * 179.76755 * 6 5 4
8 8 H 1.08999 * 109.46951 * 179.72792 * 7 6 5
9 9 C 1.53004 * 109.46759 * 299.72664 * 7 6 5
10 10 C 1.50699 * 109.47216 * 59.72551 * 7 6 5
11 11 O 1.21293 * 119.99606 * 0.02562 * 10 7 6
12 12 N 1.34769 * 120.00029 * 179.97438 * 10 7 6
13 13 C 1.39927 * 120.00034 * 174.62505 * 12 10 7
14 14 C 1.38963 * 120.03456 * 326.15608 * 13 12 10
15 15 C 1.38154 * 120.06486 * 179.74431 * 14 13 12
16 16 C 1.38167 * 120.14194 * 0.55050 * 15 14 13
17 17 C 1.38913 * 120.06828 * 359.69722 * 16 15 14
18 18 O 1.35753 * 120.03541 * 180.02562 * 17 16 15
19 19 C 1.34830 * 116.99845 * 185.93391 * 18 17 16
20 20 H 1.07993 * 120.00214 * 5.39726 * 19 18 17
21 21 C 1.38659 * 119.99513 * 185.40580 * 19 18 17
22 22 N 1.31557 * 120.00027 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99801 * 179.97438 * 21 19 18
24 24 H 1.48501 * 109.46986 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.46829 * 119.99925 * 23 21 19
26 26 H 1.48492 * 109.47017 * 239.99921 * 23 21 19
27 27 C 1.38713 * 120.03594 * 146.42530 * 13 12 10
28 28 C 1.38214 * 119.99447 * 179.97438 * 2 1 3
29 29 H 1.09007 * 109.46993 * 270.02532 * 1 2 3
30 30 H 1.09006 * 109.46995 * 30.01612 * 1 2 3
31 31 H 1.08997 * 109.47685 * 150.02417 * 1 2 3
32 32 H 1.07989 * 120.00561 * 359.97438 * 3 2 1
33 33 H 1.07999 * 119.99716 * 180.02562 * 4 3 2
34 34 H 1.07992 * 120.00284 * 180.27047 * 5 4 3
35 35 H 1.08999 * 109.47132 * 299.99686 * 9 7 6
36 36 H 1.08999 * 109.47284 * 60.00332 * 9 7 6
37 37 H 1.09006 * 109.46707 * 180.02562 * 9 7 6
38 38 H 0.96995 * 120.00222 * 354.90657 * 12 10 7
39 39 H 1.08000 * 119.96789 * 0.02562 * 14 13 12
40 40 H 1.08004 * 119.93109 * 180.27370 * 15 14 13
41 41 H 1.08001 * 119.96893 * 179.72668 * 16 15 14
42 42 H 0.97006 * 119.99845 * 179.97438 * 22 21 19
43 43 H 1.08001 * 120.06787 * 359.95685 * 27 13 12
44 44 H 1.07999 * 120.00565 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5804 1.1972 0.0005
5 6 4.2717 -0.0001 0.0064
6 6 3.5806 -1.1971 0.0011
7 6 4.3340 -2.5022 0.0022
8 1 3.6256 -3.3306 0.0024
9 6 5.2141 -2.5840 -1.2467
10 6 5.2000 -2.5814 1.2330
11 8 5.2044 -1.6680 2.0310
12 7 5.9685 -3.6675 1.4474
13 6 6.8560 -3.6940 2.5289
14 6 7.4846 -2.5255 2.9418
15 6 8.3568 -2.5500 4.0129
16 6 8.6158 -3.7377 4.6696
17 6 7.9946 -4.9102 4.2585
18 8 8.2492 -6.0767 4.9046
19 6 7.7112 -7.1965 4.3808
20 1 7.1826 -7.1527 3.4401
21 6 7.8367 -8.4044 5.0501
22 7 8.4810 -8.4578 6.1958
23 14 7.0908 -9.9559 4.3247
24 1 6.4236 -9.6299 3.0387
25 1 8.1625 -10.9561 4.0874
26 1 6.0930 -10.5149 5.2718
27 6 7.1135 -4.8879 3.1866
28 6 2.1980 -1.1970 0.0005
29 1 -0.3633 0.0005 1.0277
30 1 -0.3633 0.8899 -0.5141
31 1 -0.3634 -0.8901 -0.5134
32 1 1.6584 2.1326 -0.0004
33 1 4.1205 2.1325 0.0010
34 1 5.3516 -0.0002 0.0112
35 1 4.5877 -2.5268 -2.1370
36 1 5.9225 -1.7556 -1.2470
37 1 5.7587 -3.5283 -1.2462
38 1 5.9095 -4.4291 0.8497
39 1 7.2875 -1.5963 2.4277
40 1 8.8408 -1.6397 4.3347
41 1 9.3016 -3.7545 5.5038
42 1 8.5685 -9.3028 6.6642
43 1 6.6290 -5.7981 2.8653
44 1 1.6580 -2.1323 0.0005
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000739516640.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:25:34
Heat of formation + Delta-G solvation = -38.734508 kcal
Electronic energy + Delta-G solvation = -26191.146789 eV
Core-core repulsion = 22458.944231 eV
Total energy + Delta-G solvation = -3732.202558 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.83533 -40.68830 -39.87161 -38.13255 -35.74164 -35.40300 -34.22516 -33.15640
-31.23342 -30.63936 -29.92876 -27.66802 -27.33265 -25.85289 -23.94155 -23.51562
-22.96505 -21.99526 -20.76797 -19.70494 -19.27844 -18.07887 -17.60508 -17.13724
-16.89621 -16.58617 -16.15078 -16.03105 -15.67489 -15.65463 -15.46872 -15.10543
-14.60432 -14.53904 -14.38988 -14.22234 -13.94150 -13.64807 -13.48835 -13.26271
-13.13936 -13.00558 -12.79205 -12.69696 -12.63782 -12.50680 -12.38666 -12.08183
-11.87077 -11.75192 -11.44995 -11.26641 -10.82440 -10.70074 -9.70008 -9.44649
-9.36605 -8.88442 -8.46553 -6.15332 0.36833 0.43743 0.52272 0.68109
1.36379 1.44429 1.54777 1.60891 2.03351 2.18133 2.83226 2.88683
3.16458 3.48050 3.49127 3.66802 3.97385 4.06374 4.13086 4.14862
4.25684 4.29311 4.31479 4.43393 4.54289 4.58319 4.62120 4.72629
4.73733 4.84870 4.87026 4.88934 5.00892 5.01245 5.11050 5.18101
5.22606 5.32759 5.38382 5.46841 5.58741 5.65442 5.66017 5.68550
5.71623 6.01479 6.14324 6.16336 6.45746 6.97821 7.11552 7.77395
8.76768
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.017060 B = 0.002632 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1640.842090 B =10634.009554 C =11499.118571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.100 4.100
3 C -0.129 4.129
4 C -0.130 4.130
5 C -0.108 4.108
6 C -0.077 4.077
7 C -0.060 4.060
8 H 0.130 0.870
9 C -0.138 4.138
10 C 0.515 3.485
11 O -0.547 6.547
12 N -0.661 5.661
13 C 0.189 3.811
14 C -0.200 4.200
15 C -0.052 4.052
16 C -0.215 4.215
17 C 0.134 3.866
18 O -0.227 6.227
19 C -0.412 4.412
20 H 0.104 0.896
21 C -0.024 4.024
22 N -0.920 5.920
23 Si 1.019 2.981
24 H -0.247 1.247
25 H -0.269 1.269
26 H -0.272 1.272
27 C -0.260 4.260
28 C -0.123 4.123
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.139 0.861
33 H 0.134 0.866
34 H 0.110 0.890
35 H 0.088 0.912
36 H 0.055 0.945
37 H 0.080 0.920
38 H 0.423 0.577
39 H 0.129 0.871
40 H 0.152 0.848
41 H 0.118 0.882
42 H 0.272 0.728
43 H 0.130 0.870
44 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.509 14.094 -19.178 27.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.100 4.100
3 C -0.147 4.147
4 C -0.148 4.148
5 C -0.126 4.126
6 C -0.078 4.078
7 C -0.082 4.082
8 H 0.148 0.852
9 C -0.195 4.195
10 C 0.303 3.697
11 O -0.423 6.423
12 N -0.307 5.307
13 C 0.095 3.905
14 C -0.220 4.220
15 C -0.071 4.071
16 C -0.235 4.235
17 C 0.083 3.917
18 O -0.133 6.133
19 C -0.488 4.488
20 H 0.121 0.879
21 C -0.221 4.221
22 N -0.559 5.559
23 Si 0.838 3.162
24 H -0.170 1.170
25 H -0.194 1.194
26 H -0.197 1.197
27 C -0.281 4.281
28 C -0.141 4.141
29 H 0.089 0.911
30 H 0.096 0.904
31 H 0.094 0.906
32 H 0.157 0.843
33 H 0.151 0.849
34 H 0.128 0.872
35 H 0.107 0.893
36 H 0.074 0.926
37 H 0.099 0.901
38 H 0.261 0.739
39 H 0.146 0.854
40 H 0.170 0.830
41 H 0.137 0.863
42 H 0.081 0.919
43 H 0.148 0.852
44 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -13.361 14.571 -18.327 26.958
hybrid contribution 0.150 -1.127 0.201 1.155
sum -13.210 13.444 -18.126 26.149
Atomic orbital electron populations
1.20817 0.89422 1.03788 1.02762 1.20218 0.97452 0.92931 0.99408
1.21315 0.94174 0.98437 1.00724 1.21347 0.94933 0.98238 1.00259
1.20982 0.99658 0.92643 0.99344 1.19438 0.93815 0.93696 1.00811
1.20335 0.97236 0.97971 0.92611 0.85230 1.21828 0.99263 1.03320
0.95102 1.21315 0.79416 0.81058 0.87874 1.90731 1.65728 1.38631
1.47260 1.43494 1.38843 1.20255 1.28067 1.17444 0.90563 0.93406
0.89131 1.20823 1.01638 0.97545 1.02030 1.20905 0.95769 0.96732
0.93677 1.20473 1.06460 0.91200 1.05375 1.19610 0.93157 0.87423
0.91522 1.83989 1.66647 1.12985 1.49667 1.21852 1.36245 0.83907
1.06772 0.87854 1.26618 0.97243 1.02238 0.96012 1.70198 1.41245
1.28044 1.16370 0.84521 0.77879 0.75102 0.78656 1.16963 1.19413
1.19681 1.20849 1.07216 0.98714 1.01346 1.21157 0.93017 0.98798
1.01165 0.91070 0.90377 0.90578 0.84343 0.84854 0.87182 0.89272
0.92559 0.90139 0.73875 0.85357 0.83018 0.86350 0.91853 0.85213
0.84531
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.34 10.01 71.24 0.71 -0.62 16
2 C -0.10 -1.79 5.88 -19.87 -0.12 -1.91 16
3 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16
4 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16
5 C -0.11 -2.47 7.92 22.27 0.18 -2.29 16
6 C -0.08 -1.64 4.40 -19.86 -0.09 -1.73 16
7 C -0.06 -1.11 2.90 -12.28 -0.04 -1.15 16
8 H 0.13 1.76 7.88 -2.39 -0.02 1.74 16
9 C -0.14 -1.85 8.91 71.98 0.64 -1.21 16
10 C 0.51 14.00 6.75 87.66 0.59 14.59 16
11 O -0.55 -19.38 12.81 -3.07 -0.04 -19.42 16
12 N -0.66 -18.25 5.19 -303.56 -1.58 -19.83 16
13 C 0.19 6.98 6.26 38.14 0.24 7.22 16
14 C -0.20 -7.36 8.65 22.42 0.19 -7.16 16
15 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16
16 C -0.22 -9.44 9.99 22.41 0.22 -9.22 16
17 C 0.13 6.72 6.64 22.56 0.15 6.87 16
18 O -0.23 -13.53 9.76 -22.78 -0.22 -13.75 16
19 C -0.41 -23.47 9.44 67.92 0.64 -22.83 16
20 H 0.10 5.32 5.30 -2.91 -0.02 5.31 16
21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16
22 N -0.92 -56.08 13.67 21.61 0.30 -55.79 16
23 Si 1.02 41.74 29.55 68.60 2.03 43.77 16
24 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16
25 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16
26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
27 C -0.26 -11.26 9.04 22.51 0.20 -11.06 16
28 C -0.12 -2.36 9.33 22.27 0.21 -2.15 16
29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16
30 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16
31 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16
32 H 0.14 1.83 8.06 -2.92 -0.02 1.81 16
33 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16
34 H 0.11 2.59 7.52 -2.91 -0.02 2.57 16
35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
36 H 0.06 0.87 7.40 -2.39 -0.02 0.85 16
37 H 0.08 0.87 7.69 -2.38 -0.02 0.85 16
38 H 0.42 8.71 8.40 -92.71 -0.78 7.93 16
39 H 0.13 4.53 6.45 -2.91 -0.02 4.51 16
40 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16
41 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16
42 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16
43 H 0.13 5.51 5.72 -2.91 -0.02 5.49 16
44 H 0.14 2.03 7.95 -2.91 -0.02 2.00 16
Total: -1.00 -76.52 371.02 5.61 -70.92
By element:
Atomic # 1 Polarization: 33.57 SS G_CDS: 0.25 Total: 33.82 kcal
Atomic # 6 Polarization: -44.59 SS G_CDS: 4.87 Total: -39.72 kcal
Atomic # 7 Polarization: -74.34 SS G_CDS: -1.28 Total: -75.62 kcal
Atomic # 8 Polarization: -32.91 SS G_CDS: -0.26 Total: -33.17 kcal
Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal
Total: -76.52 5.61 -70.92 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739516640.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.181 kcal
(2) G-P(sol) polarization free energy of solvation -76.521 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds