Wall clock time and date at job start Tue Mar 31 2020 14:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00473 * 2 1 4 4 H 1.48497 * 109.47287 * 270.00917 * 3 2 1 5 5 H 1.48511 * 109.46634 * 30.00278 * 3 2 1 6 6 H 1.48494 * 109.47316 * 150.00235 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 173.70266 * 7 2 1 9 9 C 1.50705 * 119.99732 * 353.69200 * 7 2 1 10 10 C 1.52995 * 115.54651 * 86.11773 * 9 7 2 11 11 O 1.45197 * 109.47712 * 65.10642 * 10 9 7 12 12 C 1.34224 * 117.00447 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99910 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00406 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47363 * 179.97438 * 14 12 11 16 16 C 1.38273 * 119.93734 * 269.72657 * 15 14 12 17 17 C 1.38123 * 120.06729 * 179.77064 * 16 15 14 18 18 C 1.38830 * 119.93139 * 0.52307 * 17 16 15 19 19 N 1.40203 * 120.06274 * 179.70745 * 18 17 16 20 20 C 1.36570 * 125.66383 * 179.71894 * 19 18 17 21 21 C 1.34862 * 108.19370 * 179.86449 * 20 19 18 22 22 C 1.40940 * 107.46936 * 0.38843 * 21 20 19 23 23 C 1.34851 * 107.46846 * 359.75513 * 22 21 20 24 24 C 1.38824 * 119.86790 * 359.73191 * 18 17 16 25 25 C 1.38114 * 119.93683 * 359.97438 * 24 18 17 26 26 C 1.53000 * 117.49649 * 231.77951 * 9 7 2 27 27 C 1.52995 * 117.50141 * 300.44061 * 9 7 2 28 28 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47013 * 305.09680 * 10 9 7 30 30 H 1.09003 * 109.46823 * 185.10560 * 10 9 7 31 31 H 1.09004 * 109.46671 * 300.00025 * 14 12 11 32 32 H 1.09000 * 109.47045 * 59.99315 * 14 12 11 33 33 H 1.07996 * 119.96552 * 0.02562 * 16 15 14 34 34 H 1.08000 * 120.03343 * 180.25842 * 17 16 15 35 35 H 1.07995 * 125.90233 * 359.97438 * 20 19 18 36 36 H 1.07997 * 126.26006 * 180.14137 * 21 20 19 37 37 H 1.07996 * 126.26547 * 179.75647 * 22 21 20 38 38 H 1.07998 * 125.89693 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.02893 * 179.97438 * 24 18 17 40 40 H 1.07997 * 119.96757 * 179.97438 * 25 24 18 41 41 H 1.09003 * 117.50169 * 215.00080 * 26 9 7 42 42 H 1.08999 * 117.50464 * 0.03245 * 26 9 7 43 43 H 1.09003 * 117.50111 * 359.97438 * 27 9 7 44 44 H 1.08999 * 117.49859 * 144.97608 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1423 10 6 0.7190 -3.0931 -1.1589 11 8 1.8296 -3.4644 -2.0173 12 6 1.5256 -4.0073 -3.2067 13 8 0.3697 -4.1674 -3.5200 14 6 2.6260 -4.4171 -4.1513 15 6 2.0222 -4.9948 -5.4054 16 6 1.7687 -6.3516 -5.4876 17 6 1.2110 -6.8831 -6.6340 18 6 0.9150 -6.0553 -7.7084 19 7 0.3546 -6.5929 -8.8757 20 6 0.0147 -5.8867 -9.9942 21 6 -0.4889 -6.7496 -10.9001 22 6 -0.4681 -8.0333 -10.3189 23 6 0.0525 -7.9089 -9.0811 24 6 1.1756 -4.6943 -7.6249 25 6 1.7277 -4.1676 -6.4737 26 6 1.7340 -3.4682 1.2227 27 6 0.4253 -2.6967 1.4101 28 1 -0.4850 0.8401 0.0004 29 1 0.0973 -2.3561 -1.6674 30 1 0.1230 -3.9773 -0.9331 31 1 3.2294 -3.5458 -4.4060 32 1 3.2552 -5.1674 -3.6724 33 1 2.0032 -6.9957 -4.6530 34 1 1.0094 -7.9423 -6.6960 35 1 0.1309 -4.8217 -10.1303 36 1 -0.8467 -6.5014 -11.8884 37 1 -0.8069 -8.9491 -10.7803 38 1 0.2046 -8.7113 -8.3745 39 1 0.9467 -4.0480 -8.4594 40 1 1.9310 -3.1090 -6.4084 41 1 1.6635 -4.5343 1.0066 42 1 2.5872 -3.1671 1.8306 43 1 0.4181 -1.8882 2.1412 44 1 -0.5063 -3.2547 1.3171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:56 Heat of formation + Delta-G solvation = 17.840563 kcal Electronic energy + Delta-G solvation = -25795.305026 eV Core-core repulsion = 22065.555747 eV Total energy + Delta-G solvation = -3729.749279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81180 -40.06878 -38.93074 -36.81909 -35.28671 -34.02991 -31.99512 -31.48613 -31.07182 -29.04817 -27.70184 -26.33987 -25.20432 -23.28812 -22.78631 -21.24061 -20.55394 -20.20372 -19.92907 -19.29255 -18.74350 -17.10041 -16.55921 -16.04717 -15.75138 -15.24369 -15.20503 -15.11964 -14.94701 -14.62781 -14.21994 -13.85843 -13.55961 -13.51575 -13.21986 -12.69578 -12.59251 -12.47869 -12.37793 -12.04990 -11.83766 -11.80175 -11.58948 -11.23208 -11.01578 -10.90162 -10.56449 -10.32478 -10.14406 -9.91470 -9.88451 -9.58324 -9.24552 -8.85996 -8.50409 -8.48766 -8.26161 -8.12267 -6.10568 -4.16024 0.69112 1.11440 2.21781 2.62031 2.71355 2.76651 3.23144 3.26030 3.32834 3.36218 3.71683 4.35628 4.40971 4.50451 4.53218 4.78907 4.84722 4.93106 5.10248 5.13552 5.20021 5.24295 5.25075 5.41842 5.43273 5.49110 5.62827 5.73567 5.82226 5.94809 5.95678 6.03329 6.10890 6.20669 6.29499 6.34921 6.48958 6.53374 6.63196 6.67578 6.69834 6.97367 6.99849 7.21597 7.22539 7.32864 7.44081 7.82630 8.31616 8.40981 8.85760 9.49923 10.98752 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.002272 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.910519 B =12320.284338 C =12922.887357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.117 3.883 11 O -0.338 6.338 12 C 0.453 3.547 13 O -0.516 6.516 14 C -0.077 4.077 15 C -0.077 4.077 16 C -0.075 4.075 17 C -0.138 4.138 18 C 0.134 3.866 19 N -0.394 5.394 20 C -0.014 4.014 21 C -0.194 4.194 22 C -0.194 4.194 23 C -0.015 4.015 24 C -0.137 4.137 25 C -0.073 4.073 26 C -0.205 4.205 27 C -0.145 4.145 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -13.397 -16.234 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.036 3.964 10 C 0.044 3.956 11 O -0.253 6.253 12 C 0.295 3.705 13 O -0.405 6.405 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.093 4.093 17 C -0.157 4.157 18 C 0.042 3.958 19 N -0.065 5.065 20 C -0.141 4.141 21 C -0.218 4.218 22 C -0.218 4.218 23 C -0.142 4.142 24 C -0.156 4.156 25 C -0.091 4.091 26 C -0.242 4.242 27 C -0.182 4.182 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.045 -13.180 -16.032 20.976 hybrid contribution 0.041 0.950 -0.011 0.951 sum 3.086 -12.229 -16.043 20.407 Atomic orbital electron populations 1.70004 1.05921 1.26732 1.49117 1.25028 0.94863 0.99120 0.94518 0.86588 0.79974 0.83241 0.78197 1.20619 1.21154 1.19712 1.20378 0.93083 0.88300 1.50969 0.91849 1.18787 0.98997 0.94233 0.84394 1.22903 0.85389 0.96884 0.90473 1.86510 1.41487 1.70651 1.26638 1.23339 0.89793 0.75041 0.82298 1.90647 1.22044 1.51803 1.76052 1.20284 0.96115 1.03710 0.91320 1.19412 1.00138 0.93621 0.94582 1.20869 0.96841 0.94660 0.96938 1.20724 1.02616 0.99659 0.92739 1.17894 0.98518 0.93277 0.86069 1.41682 1.46275 1.07553 1.11009 1.21929 1.07003 0.98348 0.86869 1.20986 1.07553 0.93079 1.00191 1.20980 1.07405 0.98322 0.95082 1.21908 1.07307 0.85408 0.99603 1.20743 1.02612 0.92645 0.99632 1.20917 0.96394 0.99998 0.91806 1.23012 0.98567 0.95681 1.06973 1.22536 0.92295 1.01225 1.02160 0.92884 0.90658 0.94358 0.86643 0.86881 0.84998 0.85246 0.81838 0.84260 0.84270 0.81876 0.85195 0.84833 0.91575 0.90039 0.89389 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 12.88 55.43 0.71 -23.92 16 2 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.49 -13.11 8.78 -34.44 -0.30 -13.41 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.89 1.62 -155.66 -0.25 0.64 16 10 C 0.12 2.72 5.29 37.16 0.20 2.92 16 11 O -0.34 -7.08 10.16 -39.24 -0.40 -7.48 16 12 C 0.45 8.14 7.95 36.00 0.29 8.43 16 13 O -0.52 -10.74 15.78 -18.75 -0.30 -11.04 16 14 C -0.08 -0.94 5.94 -29.04 -0.17 -1.12 16 15 C -0.08 -0.93 4.38 -104.59 -0.46 -1.39 16 16 C -0.07 -0.83 9.69 -39.61 -0.38 -1.21 16 17 C -0.14 -1.49 9.45 -39.40 -0.37 -1.86 16 18 C 0.13 1.56 6.62 -83.59 -0.55 1.00 16 19 N -0.39 -4.42 2.97 -60.92 -0.18 -4.60 16 20 C -0.01 -0.15 10.74 -16.64 -0.18 -0.33 16 21 C -0.19 -1.90 10.86 -39.76 -0.43 -2.33 16 22 C -0.19 -1.88 10.86 -39.76 -0.43 -2.32 16 23 C -0.02 -0.15 10.74 -16.64 -0.18 -0.33 16 24 C -0.14 -1.53 9.45 -39.41 -0.37 -1.90 16 25 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 26 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 27 C -0.14 -3.32 9.37 -26.70 -0.25 -3.57 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.08 1.96 8.13 -51.93 -0.42 1.53 16 30 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.12 1.22 8.09 -51.93 -0.42 0.80 16 32 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.11 6.71 -52.49 -0.35 0.76 16 35 H 0.16 1.31 7.01 -52.49 -0.37 0.94 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.16 1.25 7.01 -52.49 -0.37 0.88 16 39 H 0.13 1.18 6.71 -52.49 -0.35 0.83 16 40 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -31.90 380.16 -10.10 -42.00 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.05 Total: 4.52 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -4.60 Total: -20.92 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.53 Total: -28.52 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.69 Total: -18.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.90 -10.10 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.841 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds