Wall clock time and date at job start Tue Mar 31 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00473 * 2 1 4 4 H 1.48497 * 109.47287 * 270.00917 * 3 2 1 5 5 H 1.48511 * 109.46634 * 30.00278 * 3 2 1 6 6 H 1.48494 * 109.47316 * 150.00235 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 173.70266 * 7 2 1 9 9 C 1.50705 * 119.99732 * 353.69200 * 7 2 1 10 10 C 1.52995 * 115.54651 * 86.11773 * 9 7 2 11 11 O 1.45197 * 109.47712 * 65.10642 * 10 9 7 12 12 C 1.34224 * 117.00447 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99910 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00406 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47363 * 179.97438 * 14 12 11 16 16 C 1.38273 * 119.93734 * 269.72657 * 15 14 12 17 17 C 1.38123 * 120.06729 * 179.77064 * 16 15 14 18 18 C 1.38830 * 119.93139 * 0.52307 * 17 16 15 19 19 N 1.40203 * 120.06274 * 179.70745 * 18 17 16 20 20 C 1.36570 * 125.66383 * 179.71894 * 19 18 17 21 21 C 1.34862 * 108.19370 * 179.86449 * 20 19 18 22 22 C 1.40940 * 107.46936 * 0.38843 * 21 20 19 23 23 C 1.34851 * 107.46846 * 359.75513 * 22 21 20 24 24 C 1.38824 * 119.86790 * 359.73191 * 18 17 16 25 25 C 1.38114 * 119.93683 * 359.97438 * 24 18 17 26 26 C 1.53000 * 117.49649 * 231.77951 * 9 7 2 27 27 C 1.52995 * 117.50141 * 300.44061 * 9 7 2 28 28 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47013 * 305.09680 * 10 9 7 30 30 H 1.09003 * 109.46823 * 185.10560 * 10 9 7 31 31 H 1.09004 * 109.46671 * 300.00025 * 14 12 11 32 32 H 1.09000 * 109.47045 * 59.99315 * 14 12 11 33 33 H 1.07996 * 119.96552 * 0.02562 * 16 15 14 34 34 H 1.08000 * 120.03343 * 180.25842 * 17 16 15 35 35 H 1.07995 * 125.90233 * 359.97438 * 20 19 18 36 36 H 1.07997 * 126.26006 * 180.14137 * 21 20 19 37 37 H 1.07996 * 126.26547 * 179.75647 * 22 21 20 38 38 H 1.07998 * 125.89693 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.02893 * 179.97438 * 24 18 17 40 40 H 1.07997 * 119.96757 * 179.97438 * 25 24 18 41 41 H 1.09003 * 117.50169 * 215.00080 * 26 9 7 42 42 H 1.08999 * 117.50464 * 0.03245 * 26 9 7 43 43 H 1.09003 * 117.50111 * 359.97438 * 27 9 7 44 44 H 1.08999 * 117.49859 * 144.97608 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1423 10 6 0.7190 -3.0931 -1.1589 11 8 1.8296 -3.4644 -2.0173 12 6 1.5256 -4.0073 -3.2067 13 8 0.3697 -4.1674 -3.5200 14 6 2.6260 -4.4171 -4.1513 15 6 2.0222 -4.9948 -5.4054 16 6 1.7687 -6.3516 -5.4876 17 6 1.2110 -6.8831 -6.6340 18 6 0.9150 -6.0553 -7.7084 19 7 0.3546 -6.5929 -8.8757 20 6 0.0147 -5.8867 -9.9942 21 6 -0.4889 -6.7496 -10.9001 22 6 -0.4681 -8.0333 -10.3189 23 6 0.0525 -7.9089 -9.0811 24 6 1.1756 -4.6943 -7.6249 25 6 1.7277 -4.1676 -6.4737 26 6 1.7340 -3.4682 1.2227 27 6 0.4253 -2.6967 1.4101 28 1 -0.4850 0.8401 0.0004 29 1 0.0973 -2.3561 -1.6674 30 1 0.1230 -3.9773 -0.9331 31 1 3.2294 -3.5458 -4.4060 32 1 3.2552 -5.1674 -3.6724 33 1 2.0032 -6.9957 -4.6530 34 1 1.0094 -7.9423 -6.6960 35 1 0.1309 -4.8217 -10.1303 36 1 -0.8467 -6.5014 -11.8884 37 1 -0.8069 -8.9491 -10.7803 38 1 0.2046 -8.7113 -8.3745 39 1 0.9467 -4.0480 -8.4594 40 1 1.9310 -3.1090 -6.4084 41 1 1.6635 -4.5343 1.0066 42 1 2.5872 -3.1671 1.8306 43 1 0.4181 -1.8882 2.1412 44 1 -0.5063 -3.2547 1.3171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:55 Heat of formation + Delta-G solvation = 4.619362 kcal Electronic energy + Delta-G solvation = -25795.878340 eV Core-core repulsion = 22065.555747 eV Total energy + Delta-G solvation = -3730.322593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56731 -41.45512 -39.92258 -38.54327 -36.92167 -34.92981 -34.02380 -32.29603 -31.99278 -29.77929 -29.07311 -27.81489 -27.04816 -24.09619 -23.74922 -22.97746 -21.77926 -21.18965 -20.94973 -20.82932 -19.50847 -18.61278 -18.30014 -17.44204 -17.14120 -16.60275 -16.26981 -16.21771 -15.94349 -15.81854 -15.56830 -15.04479 -14.83997 -14.32498 -14.30582 -14.09896 -13.88957 -13.55101 -13.35823 -13.24421 -13.08992 -12.99859 -12.90546 -12.82595 -12.61495 -12.37353 -12.08973 -12.04326 -11.69529 -11.64555 -11.38404 -10.77748 -10.74843 -10.49166 -10.08601 -10.07196 -9.22968 -8.95329 -8.14298 -6.25449 -0.16026 0.28745 1.29553 1.39621 1.41525 1.43286 1.53330 1.85585 1.95318 2.03794 2.42027 2.76639 3.14971 3.45047 3.56653 3.62020 3.77508 3.97465 4.05465 4.06882 4.15015 4.23660 4.29445 4.38885 4.46468 4.47839 4.50875 4.63281 4.65645 4.66507 4.77500 4.87360 4.94379 4.96874 5.04942 5.15933 5.18519 5.29909 5.35666 5.46776 5.49147 5.58480 5.70082 5.74364 5.78625 5.96062 6.23164 6.35527 6.45471 6.80329 6.87855 7.43422 8.94544 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.002272 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.910519 B =12320.284338 C =12922.887357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.003 3.997 10 C 0.130 3.870 11 O -0.347 6.347 12 C 0.450 3.550 13 O -0.548 6.548 14 C -0.065 4.065 15 C -0.095 4.095 16 C -0.079 4.079 17 C -0.144 4.144 18 C 0.124 3.876 19 N -0.404 5.404 20 C -0.033 4.033 21 C -0.203 4.203 22 C -0.203 4.203 23 C -0.030 4.030 24 C -0.146 4.146 25 C -0.084 4.084 26 C -0.175 4.175 27 C -0.149 4.149 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.183 0.817 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -14.519 -16.858 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.002 3.998 10 C 0.056 3.944 11 O -0.262 6.262 12 C 0.295 3.705 13 O -0.439 6.439 14 C -0.101 4.101 15 C -0.095 4.095 16 C -0.097 4.097 17 C -0.163 4.163 18 C 0.032 3.968 19 N -0.076 5.076 20 C -0.160 4.160 21 C -0.227 4.227 22 C -0.227 4.227 23 C -0.157 4.157 24 C -0.166 4.166 25 C -0.103 4.103 26 C -0.212 4.212 27 C -0.187 4.187 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.200 0.800 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.351 -14.317 -16.668 22.399 hybrid contribution -0.389 1.221 0.085 1.284 sum 3.962 -13.095 -16.583 21.499 Atomic orbital electron populations 1.70117 1.07218 1.27281 1.50280 1.25751 0.95595 1.02248 0.94358 0.85640 0.78968 0.79371 0.78208 1.20303 1.21053 1.18860 1.20644 0.93024 0.89700 1.50595 0.92398 1.18900 1.00536 0.94856 0.85470 1.22452 0.85667 0.96037 0.90214 1.86516 1.40525 1.71314 1.27894 1.24493 0.90927 0.73522 0.81606 1.90631 1.23942 1.53040 1.76335 1.20415 0.94339 1.05340 0.90041 1.19514 1.01229 0.94248 0.94537 1.21146 0.96313 0.94623 0.97605 1.21001 1.02211 1.00698 0.92404 1.18138 0.98476 0.93665 0.86560 1.41834 1.46627 1.08062 1.11077 1.22347 1.07322 0.99379 0.86928 1.21339 1.07210 0.93193 1.00930 1.21340 1.07137 0.99091 0.95136 1.22379 1.07303 0.85603 1.00368 1.20951 1.02569 0.92998 1.00039 1.21124 0.96524 1.00522 0.92099 1.23020 0.97480 0.96449 1.04282 1.22472 0.93711 1.01374 1.01127 0.93071 0.94502 0.93549 0.84722 0.83685 0.83127 0.83306 0.80392 0.82579 0.82446 0.79972 0.83839 0.84134 0.88968 0.89516 0.91248 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.92 12.88 21.45 0.28 -51.65 16 2 C 0.02 1.12 5.38 84.65 0.46 1.57 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.50 -26.97 8.78 25.60 0.22 -26.75 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.14 1.62 -52.93 -0.09 0.05 16 10 C 0.13 6.14 5.29 71.98 0.38 6.52 16 11 O -0.35 -14.40 10.16 -51.36 -0.52 -14.92 16 12 C 0.45 15.85 7.95 71.24 0.57 16.41 16 13 O -0.55 -22.91 15.78 21.96 0.35 -22.57 16 14 C -0.06 -1.45 5.94 29.10 0.17 -1.28 16 15 C -0.09 -2.15 4.38 -19.85 -0.09 -2.24 16 16 C -0.08 -1.60 9.69 22.25 0.22 -1.39 16 17 C -0.14 -2.88 9.45 22.38 0.21 -2.67 16 18 C 0.12 2.75 6.62 38.08 0.25 3.00 16 19 N -0.40 -8.66 2.97 -346.66 -1.03 -9.69 16 20 C -0.03 -0.66 10.74 83.18 0.89 0.24 16 21 C -0.20 -3.73 10.86 22.16 0.24 -3.49 16 22 C -0.20 -3.66 10.86 22.15 0.24 -3.42 16 23 C -0.03 -0.57 10.74 83.18 0.89 0.32 16 24 C -0.15 -3.16 9.45 22.38 0.21 -2.94 16 25 C -0.08 -1.90 9.69 22.25 0.22 -1.68 16 26 C -0.18 -7.20 9.96 30.62 0.30 -6.89 16 27 C -0.15 -6.83 9.37 30.62 0.29 -6.54 16 28 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.04 1.98 8.13 -2.38 -0.02 1.96 16 30 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 31 H 0.13 2.54 8.09 -2.39 -0.02 2.52 16 32 H 0.15 2.34 8.08 -2.39 -0.02 2.32 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.15 2.26 6.71 -2.91 -0.02 2.24 16 35 H 0.18 2.70 7.01 -2.91 -0.02 2.68 16 36 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.18 2.47 7.01 -2.91 -0.02 2.45 16 39 H 0.14 2.53 6.71 -2.91 -0.02 2.51 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.28 16 42 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -69.16 380.16 7.69 -61.47 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.00 Total: 23.83 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 5.59 Total: -31.18 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.75 Total: -61.34 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.17 Total: -37.49 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.16 7.69 -61.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.087 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds