Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38316 * 119.87973 * 2 1 4 4 C 1.38022 * 120.11964 * 180.02562 * 3 2 1 5 5 C 1.39325 * 119.88173 * 359.97438 * 4 3 2 6 6 C 1.48406 * 120.12367 * 179.97438 * 5 4 3 7 7 C 1.39457 * 120.46364 * 359.97438 * 6 5 4 8 8 N 1.31785 * 120.92045 * 180.02562 * 7 6 5 9 9 C 1.31710 * 122.02492 * 359.72611 * 8 7 6 10 10 C 1.39635 * 120.82611 * 0.53833 * 9 8 7 11 11 C 1.47736 * 120.51291 * 179.74948 * 10 9 8 12 12 O 1.21462 * 120.00107 * 179.72425 * 11 10 9 13 13 O 1.34705 * 119.99592 * 359.72255 * 11 10 9 14 14 C 1.45198 * 117.00016 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47375 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47155 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99998 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99772 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47324 * 119.99709 * 21 19 17 24 24 H 1.48507 * 109.46972 * 240.00057 * 21 19 17 25 25 C 1.39457 * 120.46853 * 180.02562 * 6 5 4 26 26 C 1.39329 * 119.75746 * 0.25234 * 5 4 3 27 27 C 1.38020 * 119.87631 * 359.51409 * 26 5 4 28 28 H 1.09004 * 109.47563 * 89.99763 * 1 2 3 29 29 H 1.09001 * 109.47424 * 209.99799 * 1 2 3 30 30 H 1.09000 * 109.47342 * 329.99501 * 1 2 3 31 31 H 1.08001 * 119.94347 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.05653 * 179.97438 * 4 3 2 33 33 H 1.07992 * 119.53840 * 0.04557 * 7 6 5 34 34 H 1.08004 * 119.59278 * 180.27044 * 9 8 7 35 35 H 1.08998 * 109.47176 * 300.00225 * 14 13 11 36 36 H 1.08997 * 109.47371 * 60.00225 * 14 13 11 37 37 H 1.09006 * 109.46544 * 299.99685 * 15 14 13 38 38 H 1.08994 * 109.47422 * 59.99968 * 15 14 13 39 39 H 1.08995 * 109.46564 * 299.99491 * 16 15 14 40 40 H 1.08994 * 109.47204 * 59.99563 * 16 15 14 41 41 H 0.97003 * 120.00039 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.91281 * 359.95491 * 25 6 5 43 43 H 1.08002 * 120.06248 * 179.71997 * 26 5 4 44 44 H 1.08008 * 119.93627 * 180.20842 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1993 0.0000 4 6 3.5762 1.2051 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7595 -0.0001 -0.0017 7 6 6.4665 1.2019 -0.0033 8 7 7.7843 1.2124 -0.0048 9 6 8.4916 0.1013 0.0004 10 6 7.8644 -1.1462 -0.0033 11 6 8.6646 -2.3881 -0.0030 12 8 8.1093 -3.4684 -0.0012 13 8 10.0100 -2.3223 -0.0046 14 6 10.7316 -3.5823 -0.0035 15 6 12.2368 -3.3081 -0.0050 16 6 12.9971 -4.6359 -0.0045 17 6 14.4797 -4.3657 -0.0067 18 1 14.8433 -3.3487 -0.0086 19 6 15.3720 -5.4169 -0.0061 20 7 14.9292 -6.6552 -0.0032 21 14 17.2097 -5.0821 -0.0094 22 1 17.4457 -3.6159 -0.0131 23 1 17.8240 -5.6798 1.2032 24 1 17.8203 -5.6842 -1.2218 25 6 6.4666 -1.2021 -0.0022 26 6 3.5762 -1.2052 -0.0053 27 6 2.1960 -1.1993 0.0001 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6531 2.1330 0.0004 32 1 4.1132 2.1421 -0.0010 33 1 5.9266 2.1372 -0.0030 34 1 9.5703 0.1558 0.0034 35 1 10.4672 -4.1516 0.8876 36 1 10.4653 -4.1543 -0.8923 37 1 12.5014 -2.7386 -0.8961 38 1 12.5029 -2.7363 0.8839 39 1 12.7325 -5.2056 0.8862 40 1 12.7310 -5.2073 -0.8937 41 1 15.5569 -7.3948 -0.0024 42 1 5.9493 -2.1501 -0.0011 43 1 4.1132 -2.1422 -0.0099 44 1 1.6531 -2.1330 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757892638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = -48.097226 kcal Electronic energy + Delta-G solvation = -24822.282030 eV Core-core repulsion = 21089.673474 eV Total energy + Delta-G solvation = -3732.608556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09050 -40.02069 -39.20831 -36.55416 -34.55764 -34.01939 -32.86685 -31.74379 -31.39535 -31.07537 -27.34209 -27.08464 -25.39542 -23.99509 -23.36343 -22.50375 -21.67081 -20.71704 -20.33240 -18.31254 -17.61889 -16.97824 -16.53336 -16.39868 -16.29451 -15.94220 -15.44311 -15.09666 -14.62501 -14.47448 -14.21956 -14.17301 -13.92915 -13.84185 -13.35439 -13.32003 -12.76268 -12.63968 -12.55592 -12.23175 -12.20285 -11.93513 -11.78464 -11.37717 -11.00423 -10.84440 -10.68005 -10.54505 -10.53402 -10.45746 -9.93403 -9.86385 -9.74855 -9.53371 -9.39793 -9.16697 -8.48944 -8.40330 -6.04886 -4.07904 0.01582 0.41153 0.96705 1.35137 2.43902 2.65257 3.24059 3.29614 3.37174 3.41495 3.62532 3.91188 4.07463 4.27762 4.37733 4.41838 4.43661 4.45882 4.55044 4.65052 4.77060 4.92167 5.00977 5.12654 5.15437 5.20886 5.31362 5.33859 5.52626 5.53194 5.56369 5.61466 5.62933 5.68040 5.91218 5.96660 6.12177 6.14191 6.15850 6.38366 6.50704 6.51637 6.76138 6.94908 7.46441 7.58579 7.68951 7.76367 7.93390 8.34186 8.98561 9.56648 11.06554 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.001712 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.237665 B =16347.833919 C =17130.017961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.118 4.118 4 C -0.104 4.104 5 C -0.048 4.048 6 C -0.107 4.107 7 C 0.136 3.864 8 N -0.484 5.484 9 C 0.159 3.841 10 C -0.166 4.166 11 C 0.509 3.491 12 O -0.505 6.505 13 O -0.351 6.351 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.008 4.008 26 C -0.103 4.103 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.226 16.869 -0.005 33.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.048 4.048 6 C -0.110 4.110 7 C -0.021 4.021 8 N -0.191 5.191 9 C 0.002 3.998 10 C -0.169 4.169 11 C 0.352 3.648 12 O -0.394 6.394 13 O -0.267 6.267 14 C -0.003 4.003 15 C -0.147 4.147 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.033 4.033 26 C -0.121 4.121 27 C -0.134 4.134 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.169 0.831 43 H 0.146 0.854 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.833 17.141 -0.008 33.544 hybrid contribution 0.612 -1.024 -0.006 1.193 sum -28.221 16.117 -0.015 32.499 Atomic orbital electron populations 1.20829 0.91025 1.02974 1.02512 1.20049 0.96291 0.93177 0.98778 1.20977 0.93855 0.97741 1.00980 1.21177 0.94250 0.97169 0.99589 1.18515 0.90351 0.93909 1.02060 1.19677 0.93408 0.93917 1.03948 1.23199 0.89971 0.97460 0.91456 1.67807 1.07645 1.30762 1.12926 1.23402 1.01428 0.86027 0.88988 1.20220 0.93673 0.93491 1.09554 1.20774 0.82174 0.88469 0.73336 1.90834 1.72733 1.30217 1.45650 1.86526 1.18053 1.39070 1.83045 1.23592 0.92900 0.81436 1.02404 1.21788 0.88536 1.02256 1.02125 1.19063 0.94456 0.90129 0.97737 1.21210 0.90940 0.92886 1.50934 0.92323 1.25028 0.99173 0.95087 0.95172 1.69975 1.34536 0.98220 1.50596 0.86491 0.85215 0.78436 0.77600 1.19642 1.20975 1.20979 1.21805 0.92042 0.99103 0.90392 1.21279 0.94346 0.97524 0.98981 1.21009 0.93861 0.97834 1.00679 0.90969 0.91377 0.91408 0.85641 0.85452 0.81896 0.80554 0.91260 0.91254 0.92001 0.91994 0.96183 0.96187 0.92945 0.83108 0.85422 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.01 36.00 0.36 -0.13 16 2 C -0.08 -0.54 5.88 -104.57 -0.62 -1.15 16 3 C -0.12 -0.74 9.68 -39.63 -0.38 -1.12 16 4 C -0.10 -0.71 9.44 -39.26 -0.37 -1.08 16 5 C -0.05 -0.40 5.88 -104.90 -0.62 -1.01 16 6 C -0.11 -1.01 5.89 -104.80 -0.62 -1.63 16 7 C 0.14 1.24 10.59 -17.12 -0.18 1.06 16 8 N -0.48 -5.36 10.33 -12.63 -0.13 -5.49 16 9 C 0.16 1.82 10.78 -17.08 -0.18 1.64 16 10 C -0.17 -2.06 5.89 -104.87 -0.62 -2.68 16 11 C 0.51 7.80 7.90 34.61 0.27 8.07 16 12 O -0.50 -8.86 16.20 -19.24 -0.31 -9.17 16 13 O -0.35 -5.67 9.49 -40.50 -0.38 -6.06 16 14 C 0.07 1.25 5.48 37.16 0.20 1.45 16 15 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.01 -0.09 9.07 -38.51 -0.35 -0.44 16 26 C -0.10 -0.84 9.44 -39.26 -0.37 -1.21 16 27 C -0.12 -0.82 9.68 -39.63 -0.38 -1.20 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 32 H 0.13 0.60 6.23 -52.48 -0.33 0.27 16 33 H 0.16 0.98 6.21 -52.49 -0.33 0.65 16 34 H 0.18 1.85 7.61 -52.48 -0.40 1.45 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.15 1.52 5.99 -52.49 -0.31 1.21 16 43 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 44 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -32.40 378.48 -9.84 -42.24 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.88 Total: -2.99 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -4.55 Total: -14.74 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.61 Total: -31.44 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.70 Total: -15.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.40 -9.84 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757892638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.859 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds