Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38316 * 119.87973 * 2 1 4 4 C 1.38022 * 120.11964 * 180.02562 * 3 2 1 5 5 C 1.39325 * 119.88173 * 359.97438 * 4 3 2 6 6 C 1.48406 * 120.12367 * 179.97438 * 5 4 3 7 7 C 1.39457 * 120.46364 * 359.97438 * 6 5 4 8 8 N 1.31785 * 120.92045 * 180.02562 * 7 6 5 9 9 C 1.31710 * 122.02492 * 359.72611 * 8 7 6 10 10 C 1.39635 * 120.82611 * 0.53833 * 9 8 7 11 11 C 1.47736 * 120.51291 * 179.74948 * 10 9 8 12 12 O 1.21462 * 120.00107 * 179.72425 * 11 10 9 13 13 O 1.34705 * 119.99592 * 359.72255 * 11 10 9 14 14 C 1.45198 * 117.00016 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47375 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47155 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99998 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99772 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47324 * 119.99709 * 21 19 17 24 24 H 1.48507 * 109.46972 * 240.00057 * 21 19 17 25 25 C 1.39457 * 120.46853 * 180.02562 * 6 5 4 26 26 C 1.39329 * 119.75746 * 0.25234 * 5 4 3 27 27 C 1.38020 * 119.87631 * 359.51409 * 26 5 4 28 28 H 1.09004 * 109.47563 * 89.99763 * 1 2 3 29 29 H 1.09001 * 109.47424 * 209.99799 * 1 2 3 30 30 H 1.09000 * 109.47342 * 329.99501 * 1 2 3 31 31 H 1.08001 * 119.94347 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.05653 * 179.97438 * 4 3 2 33 33 H 1.07992 * 119.53840 * 0.04557 * 7 6 5 34 34 H 1.08004 * 119.59278 * 180.27044 * 9 8 7 35 35 H 1.08998 * 109.47176 * 300.00225 * 14 13 11 36 36 H 1.08997 * 109.47371 * 60.00225 * 14 13 11 37 37 H 1.09006 * 109.46544 * 299.99685 * 15 14 13 38 38 H 1.08994 * 109.47422 * 59.99968 * 15 14 13 39 39 H 1.08995 * 109.46564 * 299.99491 * 16 15 14 40 40 H 1.08994 * 109.47204 * 59.99563 * 16 15 14 41 41 H 0.97003 * 120.00039 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.91281 * 359.95491 * 25 6 5 43 43 H 1.08002 * 120.06248 * 179.71997 * 26 5 4 44 44 H 1.08008 * 119.93627 * 180.20842 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1993 0.0000 4 6 3.5762 1.2051 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7595 -0.0001 -0.0017 7 6 6.4665 1.2019 -0.0033 8 7 7.7843 1.2124 -0.0048 9 6 8.4916 0.1013 0.0004 10 6 7.8644 -1.1462 -0.0033 11 6 8.6646 -2.3881 -0.0030 12 8 8.1093 -3.4684 -0.0012 13 8 10.0100 -2.3223 -0.0046 14 6 10.7316 -3.5823 -0.0035 15 6 12.2368 -3.3081 -0.0050 16 6 12.9971 -4.6359 -0.0045 17 6 14.4797 -4.3657 -0.0067 18 1 14.8433 -3.3487 -0.0086 19 6 15.3720 -5.4169 -0.0061 20 7 14.9292 -6.6552 -0.0032 21 14 17.2097 -5.0821 -0.0094 22 1 17.4457 -3.6159 -0.0131 23 1 17.8240 -5.6798 1.2032 24 1 17.8203 -5.6842 -1.2218 25 6 6.4666 -1.2021 -0.0022 26 6 3.5762 -1.2052 -0.0053 27 6 2.1960 -1.1993 0.0001 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6531 2.1330 0.0004 32 1 4.1132 2.1421 -0.0010 33 1 5.9266 2.1372 -0.0030 34 1 9.5703 0.1558 0.0034 35 1 10.4672 -4.1516 0.8876 36 1 10.4653 -4.1543 -0.8923 37 1 12.5014 -2.7386 -0.8961 38 1 12.5029 -2.7363 0.8839 39 1 12.7325 -5.2056 0.8862 40 1 12.7310 -5.2073 -0.8937 41 1 15.5569 -7.3948 -0.0024 42 1 5.9493 -2.1501 -0.0011 43 1 4.1132 -2.1422 -0.0099 44 1 1.6531 -2.1330 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757892638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = -63.486151 kcal Electronic energy + Delta-G solvation = -24822.949344 eV Core-core repulsion = 21089.673474 eV Total energy + Delta-G solvation = -3733.275870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04338 -41.03117 -39.87383 -37.92483 -35.96117 -35.15221 -33.92572 -33.47070 -31.92724 -31.75214 -29.10523 -27.64677 -26.53774 -24.98572 -24.69476 -23.29533 -22.42231 -22.17595 -21.55038 -19.30123 -18.76291 -18.35461 -17.76303 -17.75609 -17.19523 -16.98926 -16.48305 -16.01297 -15.83243 -15.67249 -15.11829 -14.94156 -14.75225 -14.55914 -14.41945 -14.12288 -14.02157 -13.87194 -13.78861 -13.41016 -13.12277 -12.97670 -12.86245 -12.51428 -12.45752 -12.29110 -12.12667 -12.00200 -11.86448 -11.51895 -11.45052 -11.29083 -11.23659 -10.73420 -10.69332 -10.57821 -9.90610 -9.08955 -8.21908 -6.33165 -0.77605 -0.40661 0.46055 0.69289 1.34024 1.39465 1.41820 1.43579 1.55966 2.41401 2.51738 2.95961 3.12344 3.13078 3.31979 3.55187 3.59551 3.62845 3.79051 3.98818 4.00802 4.02901 4.07006 4.15205 4.29229 4.39951 4.47905 4.51278 4.68456 4.77045 4.79438 4.84641 4.88433 4.90013 4.93762 5.06761 5.14479 5.23358 5.29112 5.32856 5.47761 5.49651 5.56002 5.63928 5.67337 5.80374 6.03220 6.18921 6.47406 6.67308 6.82980 7.36488 8.90429 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.034422 B = 0.001712 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.237665 B =16347.833919 C =17130.017961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.103 4.103 5 C -0.068 4.068 6 C -0.099 4.099 7 C 0.144 3.856 8 N -0.495 5.495 9 C 0.157 3.843 10 C -0.181 4.181 11 C 0.512 3.488 12 O -0.533 6.533 13 O -0.347 6.347 14 C 0.079 3.921 15 C -0.094 4.094 16 C 0.024 3.976 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.014 4.014 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.199 0.801 34 H 0.183 0.817 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.002 1.002 40 H -0.002 1.002 41 H 0.264 0.736 42 H 0.151 0.849 43 H 0.124 0.876 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.327 19.596 -0.002 36.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.069 4.069 6 C -0.101 4.101 7 C -0.013 4.013 8 N -0.203 5.203 9 C 0.000 4.000 10 C -0.184 4.184 11 C 0.357 3.643 12 O -0.424 6.424 13 O -0.263 6.263 14 C 0.005 3.995 15 C -0.132 4.132 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.205 1.205 25 C -0.039 4.039 26 C -0.136 4.136 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.215 0.785 34 H 0.200 0.800 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -29.946 19.890 -0.005 35.950 hybrid contribution 0.748 -1.822 -0.008 1.969 sum -29.197 18.069 -0.013 34.336 Atomic orbital electron populations 1.20882 0.89443 1.03803 1.03184 1.20405 0.97600 0.93062 0.97522 1.21321 0.93855 0.98662 1.00272 1.21474 0.94744 0.97393 0.98480 1.18564 0.89660 0.94765 1.03865 1.19803 0.94135 0.93371 1.02789 1.23761 0.89427 0.98657 0.89432 1.67883 1.08605 1.30263 1.13534 1.23466 1.01844 0.85790 0.88851 1.20053 0.93906 0.92364 1.12106 1.21271 0.81594 0.89251 0.72173 1.90818 1.72915 1.31493 1.47211 1.86503 1.18831 1.37650 1.83308 1.23232 0.91906 0.82154 1.02168 1.21474 0.89461 0.99418 1.02812 1.18950 0.94524 0.92242 0.95559 1.21664 0.92301 0.93354 1.50726 0.91600 1.25994 1.04465 0.94783 0.94615 1.70105 1.36405 0.99280 1.51545 0.85347 0.78805 0.78876 0.77708 1.18347 1.20443 1.20455 1.21905 0.91532 1.00021 0.90485 1.21409 0.95048 0.97619 0.99526 1.21227 0.93620 0.98896 1.00944 0.90260 0.90965 0.90238 0.83276 0.83147 0.78478 0.80049 0.91584 0.91583 0.91246 0.91231 0.98396 0.98402 0.92722 0.83139 0.85777 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 71.23 0.71 0.00 16 2 C -0.09 -0.94 5.88 -19.83 -0.12 -1.06 16 3 C -0.12 -1.21 9.68 22.24 0.22 -0.99 16 4 C -0.10 -1.14 9.44 22.48 0.21 -0.93 16 5 C -0.07 -1.04 5.88 -20.04 -0.12 -1.16 16 6 C -0.10 -1.74 5.89 -19.98 -0.12 -1.86 16 7 C 0.14 2.29 10.59 84.99 0.90 3.20 16 8 N -0.50 -10.17 10.33 -193.87 -2.00 -12.17 16 9 C 0.16 3.51 10.78 85.05 0.92 4.43 16 10 C -0.18 -4.51 5.89 -20.03 -0.12 -4.63 16 11 C 0.51 16.00 7.90 70.33 0.56 16.55 16 12 O -0.53 -19.33 16.20 19.96 0.32 -19.01 16 13 O -0.35 -11.30 9.49 -56.14 -0.53 -11.83 16 14 C 0.08 2.89 5.48 71.98 0.39 3.28 16 15 C -0.09 -3.85 5.53 30.60 0.17 -3.68 16 16 C 0.02 1.28 4.97 29.85 0.15 1.43 16 17 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 20 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 21 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 C -0.01 -0.31 9.07 22.97 0.21 -0.10 16 26 C -0.12 -1.86 9.44 22.48 0.21 -1.65 16 27 C -0.13 -1.70 9.68 22.24 0.22 -1.49 16 28 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.07 0.39 8.08 -2.39 -0.02 0.37 16 30 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 31 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.15 0.84 6.23 -2.91 -0.02 0.82 16 33 H 0.20 1.63 6.21 -2.91 -0.02 1.61 16 34 H 0.18 3.71 7.61 -2.91 -0.02 3.69 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.15 3.18 5.99 -2.91 -0.02 3.16 16 43 H 0.12 1.91 6.27 -2.91 -0.02 1.90 16 44 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -70.03 378.48 6.20 -63.84 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.01 Total: 8.18 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 5.09 Total: -18.61 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -1.72 Total: -68.62 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.21 Total: -30.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.03 6.20 -63.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757892638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.350 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds