Wall clock time and date at job start Tue Mar 31 2020 14:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38256 * 120.00332 * 2 1 4 4 C 1.38210 * 120.00304 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00116 * 359.74663 * 5 4 3 7 7 C 1.38212 * 120.00127 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99666 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47008 * 35.01294 * 8 7 2 10 10 O 1.42909 * 109.46898 * 155.00241 * 8 7 2 11 11 C 1.52994 * 109.47497 * 275.00583 * 8 7 2 12 12 N 1.46498 * 109.47105 * 180.02562 * 11 8 7 13 13 C 1.34778 * 120.00172 * 180.02562 * 12 11 8 14 14 O 1.21586 * 119.99833 * 359.97438 * 13 12 11 15 15 C 1.47643 * 120.00155 * 179.72423 * 13 12 11 16 16 C 1.40005 * 119.89386 * 359.97438 * 15 13 12 17 17 C 1.36321 * 120.10571 * 179.72204 * 16 15 13 18 18 C 1.40893 * 119.88887 * 0.55486 * 17 16 15 19 19 C 1.41110 * 120.10146 * 179.70140 * 18 17 16 20 20 H 1.07992 * 119.99739 * 204.65925 * 19 18 17 21 21 C 1.40225 * 120.00184 * 24.65544 * 19 18 17 22 22 N 1.30654 * 119.99982 * 17.87067 * 21 19 18 23 23 Si 1.86795 * 120.00136 * 197.87354 * 21 19 18 24 24 H 1.48493 * 109.47431 * 89.99724 * 23 21 19 25 25 H 1.48500 * 109.47270 * 210.00358 * 23 21 19 26 26 H 1.48501 * 109.46877 * 329.99630 * 23 21 19 27 27 C 1.40889 * 119.79347 * 359.72101 * 18 17 16 28 28 C 1.36317 * 119.88848 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.47330 * 270.02133 * 1 2 3 30 30 H 1.09004 * 109.46918 * 30.01969 * 1 2 3 31 31 H 1.08999 * 109.47123 * 150.01666 * 1 2 3 32 32 H 1.08001 * 120.00058 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.00187 * 180.02562 * 4 3 2 34 34 H 1.08006 * 119.99928 * 180.02562 * 5 4 3 35 35 H 1.08007 * 120.00400 * 180.27564 * 6 5 4 36 36 H 0.96706 * 113.99348 * 60.00358 * 10 8 7 37 37 H 1.08998 * 109.46890 * 60.00111 * 11 8 7 38 38 H 1.09003 * 109.46785 * 299.99956 * 11 8 7 39 39 H 0.96998 * 119.99955 * 359.97438 * 12 11 8 40 40 H 1.08002 * 119.95257 * 359.97438 * 16 15 13 41 41 H 1.08004 * 120.05694 * 180.27724 * 17 16 15 42 42 H 0.97000 * 119.99535 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.04869 * 179.97438 * 27 18 17 44 44 H 1.08004 * 119.94117 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0053 7 6 2.1980 -1.1969 0.0005 8 6 1.4444 -2.5021 0.0017 9 1 0.5337 -2.3962 -0.5876 10 8 2.2636 -3.5255 -0.5673 11 6 1.0810 -2.8799 1.4390 12 7 0.3490 -4.1489 1.4401 13 6 -0.0762 -4.6807 2.6033 14 8 0.1483 -4.1074 3.6518 15 6 -0.8192 -5.9565 2.6038 16 6 -1.0814 -6.6118 1.3947 17 6 -1.7622 -7.7929 1.3907 18 6 -2.2122 -8.3480 2.6049 19 6 -2.9227 -9.5672 2.6054 20 1 -3.5961 -9.7993 3.4171 21 6 -2.7546 -10.4771 1.5518 22 7 -1.7152 -10.3819 0.7660 23 14 -4.0167 -11.8255 1.2718 24 1 -5.0706 -11.3331 0.3490 25 1 -3.3505 -13.0109 0.6751 26 1 -4.6321 -12.2044 2.5691 27 6 -1.9509 -7.6819 3.8186 28 6 -1.2640 -6.5045 3.8130 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1326 0.0010 34 1 5.3517 -0.0001 0.0014 35 1 4.1205 -2.1324 0.0098 36 1 3.0930 -3.6745 -0.0929 37 1 0.4562 -2.0992 1.8729 38 1 1.9919 -2.9858 2.0282 39 1 0.1696 -4.6060 0.6036 40 1 -0.7403 -6.1830 0.4640 41 1 -1.9601 -8.3000 0.4579 42 1 -1.5991 -11.0111 0.0370 43 1 -2.2943 -8.1035 4.7517 44 1 -1.0636 -5.9929 4.7429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759410085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:27 Heat of formation + Delta-G solvation = -56.513347 kcal Electronic energy + Delta-G solvation = -25968.727746 eV Core-core repulsion = 22235.754240 eV Total energy + Delta-G solvation = -3732.973506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.27263 -39.01018 -37.41464 -36.84459 -33.98573 -33.86265 -33.19164 -31.54519 -30.32548 -29.43774 -28.29110 -27.11192 -25.81199 -23.76720 -22.03255 -21.69847 -21.11848 -20.86251 -19.55376 -17.71272 -17.50793 -17.00931 -16.47301 -15.85316 -15.54578 -15.07541 -15.03968 -14.78311 -14.28401 -14.00276 -13.84500 -13.69619 -13.57750 -13.35301 -13.14217 -12.73204 -12.56534 -12.43192 -12.14697 -12.09182 -11.94839 -11.88072 -11.35751 -11.31660 -11.28567 -11.07150 -10.94811 -10.64621 -10.39036 -10.03554 -9.55230 -9.35053 -9.09839 -8.98336 -8.82027 -8.62427 -7.71250 -7.53832 -7.03026 -4.59856 1.04932 1.12603 2.23603 2.92144 2.96151 2.98502 3.04591 3.42085 3.72663 3.74343 3.86820 4.20573 4.48732 4.55796 4.57156 4.62979 4.74778 4.82928 4.91213 5.09876 5.28481 5.38807 5.43301 5.54241 5.57459 5.67826 5.70528 5.83172 5.91800 6.06682 6.11799 6.20864 6.24494 6.32450 6.36268 6.72743 6.77721 6.83402 6.90438 7.05538 7.14224 7.38374 7.44333 7.66024 7.80120 7.86844 8.07732 8.24708 8.40715 8.63659 8.76002 9.07187 9.88972 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.002248 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.705894 B =12449.827450 C =12857.020738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.114 4.114 8 C 0.135 3.865 9 H 0.117 0.883 10 O -0.549 6.549 11 C 0.100 3.900 12 N -0.737 5.737 13 C 0.571 3.429 14 O -0.578 6.578 15 C -0.284 4.284 16 C -0.062 4.062 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.442 4.442 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.771 5.771 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.239 4.239 28 C -0.022 4.022 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.376 0.624 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.287 0.713 43 H 0.098 0.902 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 15.776 -6.353 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.142 4.142 6 C -0.123 4.123 7 C -0.115 4.115 8 C 0.076 3.924 9 H 0.134 0.866 10 O -0.355 6.355 11 C -0.025 4.025 12 N -0.391 5.391 13 C 0.366 3.634 14 O -0.460 6.460 15 C -0.289 4.289 16 C -0.081 4.081 17 C -0.198 4.198 18 C 0.125 3.875 19 C -0.470 4.470 20 H 0.103 0.897 21 C -0.148 4.148 22 N -0.394 5.394 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.259 4.259 28 C -0.041 4.041 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.224 0.776 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.933 16.026 -6.239 18.543 hybrid contribution 0.079 -0.711 -0.216 0.747 sum 7.012 15.315 -6.455 18.039 Atomic orbital electron populations 1.20943 0.90990 1.03144 1.03002 1.19734 0.96181 0.92428 0.98911 1.21031 0.94303 0.97402 1.01043 1.21156 0.94326 0.98090 0.99911 1.21091 0.99899 0.92382 1.00803 1.20882 0.93389 0.98430 0.99599 1.20262 0.94331 0.95027 1.01872 1.21117 0.93496 0.83792 0.94037 0.86583 1.86646 1.35409 1.56623 1.56871 1.21784 0.97477 0.87707 0.95533 1.45800 1.59433 1.23626 1.10231 1.18611 0.77480 0.85006 0.82262 1.90632 1.59774 1.63816 1.31759 1.18874 1.16354 0.98762 0.94870 1.20492 0.97490 0.95367 0.94730 1.20985 1.04591 0.95540 0.98652 1.17799 0.87393 0.91375 0.90941 1.19853 1.21246 1.00467 1.05434 0.89705 1.26108 0.95122 0.99154 0.94374 1.69750 1.23300 1.33203 1.13151 0.86201 0.80799 0.79268 0.79960 1.18932 1.20024 1.18294 1.20712 1.09094 0.98989 0.97072 1.20358 0.94039 0.94048 0.95697 0.90486 0.91258 0.91023 0.85936 0.86069 0.85972 0.85924 0.77572 0.91022 0.91730 0.76207 0.89216 0.86178 0.90216 0.88397 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.38 36.00 0.34 -0.73 16 2 C -0.07 -0.72 5.88 -104.63 -0.62 -1.33 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 4 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 5 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 6 C -0.11 -1.01 9.31 -39.59 -0.37 -1.38 16 7 C -0.11 -1.20 5.07 -104.62 -0.53 -1.73 16 8 C 0.13 1.51 2.79 -27.88 -0.08 1.43 16 9 H 0.12 1.26 6.16 -51.93 -0.32 0.94 16 10 O -0.55 -6.34 12.74 -35.23 -0.45 -6.79 16 11 C 0.10 1.38 5.32 -4.05 -0.02 1.36 16 12 N -0.74 -12.33 5.40 -61.32 -0.33 -12.66 16 13 C 0.57 12.21 7.76 -12.42 -0.10 12.11 16 14 O -0.58 -13.82 16.32 5.29 0.09 -13.73 16 15 C -0.28 -6.53 5.89 -104.73 -0.62 -7.15 16 16 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 17 C -0.18 -4.39 8.64 -39.27 -0.34 -4.73 16 18 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 19 C -0.44 -11.01 9.04 -37.75 -0.34 -11.36 16 20 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 21 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 22 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 23 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 26 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 27 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 28 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.61 6.03 -51.93 -0.31 0.30 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.12 0.96 6.41 -52.48 -0.34 0.63 16 36 H 0.38 3.34 7.32 45.56 0.33 3.67 16 37 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.40 6.28 6.35 -40.82 -0.26 6.02 16 40 H 0.09 1.72 6.37 -52.49 -0.33 1.39 16 41 H 0.12 2.99 6.16 -52.48 -0.32 2.67 16 42 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -29.90 367.79 -10.11 -40.01 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -4.87 Total: 15.63 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -5.67 Total: -22.35 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.28 Total: -30.58 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.36 Total: -20.52 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.90 -10.11 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759410085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.500 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds