Wall clock time and date at job start Tue Mar 31 2020 14:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37987 * 120.00574 * 20.35361 * 3 2 1 5 5 C 1.46603 * 120.00222 * 169.51543 * 4 3 2 6 6 C 1.40198 * 120.16800 * 316.02594 * 5 4 3 7 7 C 1.37838 * 119.93550 * 179.78592 * 6 5 4 8 8 C 1.38350 * 120.27966 * 0.47411 * 7 6 5 9 9 C 1.39065 * 120.33340 * 359.78086 * 8 7 6 10 10 O 1.35761 * 119.97098 * 179.97438 * 9 8 7 11 11 C 1.34833 * 116.99936 * 174.40739 * 10 9 8 12 12 H 1.08000 * 119.99691 * 5.07338 * 11 10 9 13 13 C 1.38652 * 119.99852 * 185.08049 * 11 10 9 14 14 N 1.31560 * 119.99488 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 120.00227 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47159 * 90.00126 * 15 13 11 17 17 H 1.48501 * 109.47424 * 210.00352 * 15 13 11 18 18 H 1.48501 * 109.47265 * 330.00087 * 15 13 11 19 19 C 1.38497 * 120.05546 * 359.97438 * 9 8 7 20 20 C 1.46402 * 119.99513 * 200.35317 * 3 2 1 21 21 O 1.21365 * 119.99672 * 173.07580 * 20 3 2 22 22 C 1.50691 * 120.00286 * 353.35606 * 20 3 2 23 23 C 1.53000 * 109.47360 * 274.99945 * 22 20 3 24 24 C 1.52994 * 109.47648 * 180.02562 * 23 22 20 25 25 C 1.53000 * 109.47357 * 59.99384 * 24 23 22 26 26 C 1.53000 * 109.47245 * 300.00863 * 25 24 23 27 27 C 1.52989 * 109.47488 * 59.99615 * 26 25 24 28 28 H 1.08005 * 119.99587 * 349.52058 * 4 3 2 29 29 H 1.07999 * 120.02965 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.86178 * 180.20809 * 7 6 5 31 31 H 1.07999 * 119.83714 * 179.75952 * 8 7 6 32 32 H 0.97003 * 119.99572 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.13157 * 179.97438 * 19 9 8 34 34 H 1.09004 * 109.47376 * 34.99669 * 22 20 3 35 35 H 1.09004 * 109.46651 * 300.00167 * 23 22 20 36 36 H 1.09000 * 109.47168 * 59.99368 * 23 22 20 37 37 H 1.09010 * 109.46750 * 299.99758 * 24 23 22 38 38 H 1.08996 * 109.47268 * 180.02562 * 24 23 22 39 39 H 1.08994 * 109.47321 * 179.97438 * 25 24 23 40 40 H 1.09004 * 109.46684 * 60.00093 * 25 24 23 41 41 H 1.09004 * 109.46651 * 299.99249 * 26 25 24 42 42 H 1.09006 * 109.46742 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.47278 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.47473 * 60.00138 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2586 -1.1194 -0.4156 5 6 4.7062 -1.0482 -0.6359 6 6 5.2625 0.0439 -1.3165 7 6 6.6247 0.1081 -1.5171 8 6 7.4460 -0.9062 -1.0580 9 6 6.9058 -1.9974 -0.3861 10 8 7.7185 -2.9888 0.0609 11 6 7.1488 -3.9589 0.8041 12 1 6.0788 -3.9689 0.9505 13 6 7.9367 -4.9435 1.3804 14 7 7.3809 -5.8898 2.1060 15 14 9.7872 -4.9265 1.1267 16 1 10.4275 -4.1314 2.2053 17 1 10.3048 -6.3179 1.1636 18 1 10.1007 -4.3166 -0.1905 19 6 5.5395 -2.0735 -0.1725 20 6 3.2994 1.1897 0.4410 21 8 4.5064 1.1498 0.5611 22 6 2.5529 2.4613 0.7518 23 6 2.3356 3.2537 -0.5389 24 6 1.5783 4.5450 -0.2233 25 6 2.3931 5.3867 0.7608 26 6 2.6105 4.5944 2.0515 27 6 3.3678 3.3031 1.7359 28 1 2.7325 -2.0484 -0.5787 29 1 4.6247 0.8361 -1.6799 30 1 7.0523 0.9517 -2.0386 31 1 8.5119 -0.8505 -1.2224 32 1 7.9320 -6.5788 2.5089 33 1 5.1187 -2.9206 0.3488 34 1 1.5875 2.2169 1.1949 35 1 3.3010 3.4981 -0.9820 36 1 1.7554 2.6538 -1.2401 37 1 0.6128 4.3009 0.2201 38 1 1.4231 5.1092 -1.1429 39 1 1.8538 6.3069 0.9852 40 1 3.3586 5.6308 0.3174 41 1 1.6450 4.3503 2.4948 42 1 3.1914 5.1940 2.7523 43 1 3.5223 2.7385 2.6553 44 1 4.3333 3.5472 1.2925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767714923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:58 Heat of formation + Delta-G solvation = -15.538529 kcal Electronic energy + Delta-G solvation = -26727.066650 eV Core-core repulsion = 22995.869946 eV Total energy + Delta-G solvation = -3731.196705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57448 -40.64627 -38.85292 -37.98750 -37.83735 -34.88077 -34.30949 -32.47813 -31.65868 -31.25267 -30.52718 -27.31820 -26.39609 -24.42292 -23.53089 -23.15037 -22.13520 -21.63248 -20.56203 -19.83090 -18.84924 -18.52859 -17.02078 -16.79190 -16.52917 -16.24292 -15.92804 -15.69403 -15.61884 -15.33071 -15.14117 -14.91063 -14.83658 -14.61330 -14.41094 -14.19933 -14.05246 -13.92901 -13.76215 -13.64997 -13.23095 -13.09766 -13.02415 -12.62269 -12.53837 -12.38878 -12.15911 -12.02669 -11.96931 -11.57987 -11.37236 -11.34546 -11.01581 -11.00005 -10.70970 -10.47321 -9.51470 -8.84200 -8.46929 -6.18843 -0.89298 0.61580 0.81932 1.21901 1.34098 1.37939 1.50341 1.54094 2.30428 2.37217 2.65606 2.81791 2.95386 3.06265 3.21836 3.69510 3.74988 3.80840 3.88593 4.12371 4.23756 4.25405 4.29355 4.34293 4.39062 4.48466 4.53408 4.56060 4.61959 4.70559 4.71861 4.86228 4.95645 4.98389 5.12186 5.13251 5.18377 5.25841 5.26485 5.36974 5.39075 5.39445 5.53300 5.56241 5.65815 5.78836 5.89387 6.21292 6.30498 6.55394 6.88201 7.63275 8.64563 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002973 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.775411 B = 9416.762691 C = 9906.283921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.284 3.716 3 C -0.163 4.163 4 C 0.092 3.908 5 C -0.062 4.062 6 C -0.101 4.101 7 C -0.082 4.082 8 C -0.166 4.166 9 C 0.109 3.891 10 O -0.247 6.247 11 C -0.396 4.396 12 H 0.084 0.916 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.967 3.033 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.260 1.260 19 C -0.193 4.193 20 C 0.404 3.596 21 O -0.439 6.439 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.106 4.106 28 H 0.167 0.833 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.283 0.717 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 21.431 -6.338 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.030 4.030 3 C -0.168 4.168 4 C 0.070 3.930 5 C -0.062 4.062 6 C -0.120 4.120 7 C -0.100 4.100 8 C -0.185 4.185 9 C 0.060 3.940 10 O -0.155 6.155 11 C -0.472 4.472 12 H 0.101 0.899 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.185 1.185 19 C -0.213 4.213 20 C 0.280 3.720 21 O -0.313 6.313 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.143 4.143 28 H 0.184 0.816 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.061 21.226 -6.170 24.287 hybrid contribution 0.799 -1.006 0.558 1.400 sum -9.262 20.221 -5.613 22.938 Atomic orbital electron populations 1.81286 1.12297 1.08119 1.10295 1.25182 0.91869 0.93189 0.92769 1.18611 0.85029 0.99160 1.13966 1.23553 0.92342 0.96588 0.80553 1.18629 0.91679 0.95244 1.00684 1.21078 0.95396 0.95673 0.99817 1.20957 0.92911 0.97552 0.98550 1.20726 1.01014 0.93383 1.03391 1.19431 0.90038 0.89127 0.95388 1.83544 1.36669 1.31986 1.63272 1.20683 0.94411 1.03899 1.28207 0.89871 1.25229 1.04551 0.94244 0.94813 1.69731 1.38480 1.14837 1.33555 0.85256 0.78173 0.77852 0.79712 1.19392 1.19502 1.18458 1.21360 0.93342 1.00404 1.06165 1.22163 0.88538 0.87851 0.73463 1.90747 1.16160 1.84420 1.39939 1.21655 1.00024 0.93334 0.99266 1.21444 1.01827 0.96485 0.94389 1.21512 0.98492 0.95187 1.00044 1.21557 1.00607 0.98320 0.95201 1.21529 1.00341 0.95456 0.98105 1.21420 0.98908 0.96197 0.97820 0.81616 0.84589 0.82493 0.85262 0.90724 0.86497 0.89093 0.90765 0.91331 0.92033 0.90391 0.90895 0.91706 0.91855 0.91134 0.92784 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.40 18.54 19.00 0.35 -11.04 16 2 C 0.28 6.39 14.04 88.33 1.24 7.63 16 3 C -0.16 -3.62 5.73 -19.97 -0.11 -3.73 16 4 C 0.09 2.23 9.54 24.39 0.23 2.47 16 5 C -0.06 -1.94 4.58 -20.19 -0.09 -2.03 16 6 C -0.10 -2.79 6.63 22.65 0.15 -2.64 16 7 C -0.08 -2.32 10.02 22.20 0.22 -2.10 16 8 C -0.17 -5.96 9.99 22.49 0.22 -5.74 16 9 C 0.11 4.81 6.64 22.53 0.15 4.96 16 10 O -0.25 -12.94 8.58 -22.89 -0.20 -13.14 16 11 C -0.40 -22.62 9.94 67.92 0.68 -21.94 16 12 H 0.08 4.92 5.43 -2.91 -0.02 4.91 16 13 C 0.01 0.56 5.49 84.83 0.47 1.02 16 14 N -0.92 -54.56 13.96 21.61 0.30 -54.26 16 15 Si 0.97 44.83 28.62 68.60 1.96 46.80 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 19 C -0.19 -7.85 8.92 22.76 0.20 -7.64 16 20 C 0.40 9.19 5.28 27.81 0.15 9.33 16 21 O -0.44 -12.55 11.96 -3.29 -0.04 -12.59 16 22 C -0.12 -2.23 2.05 -11.54 -0.02 -2.25 16 23 C -0.10 -1.51 5.19 30.59 0.16 -1.35 16 24 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 25 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 26 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 27 C -0.11 -1.92 4.73 30.59 0.14 -1.77 16 28 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.14 2.99 7.03 -2.91 -0.02 2.97 16 30 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.12 5.17 5.63 -2.91 -0.02 5.15 16 34 H 0.09 1.63 7.28 -2.39 -0.02 1.61 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 Total: -1.00 -66.25 368.55 7.73 -58.53 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.02 Total: 15.35 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.33 Total: -29.65 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: 0.65 Total: -65.30 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.24 Total: -25.73 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.96 Total: 46.80 kcal Total: -66.25 7.73 -58.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767714923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.991 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds