Wall clock time and date at job start Tue Mar 31 2020 14:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38340 * 119.93721 * 2 1 4 4 C 1.38306 * 120.23759 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.12136 * 359.77080 * 4 3 2 6 6 C 1.39310 * 119.87424 * 0.48088 * 5 4 3 7 7 C 1.48409 * 120.11718 * 179.76789 * 6 5 4 8 8 C 1.39448 * 120.46686 * 179.75230 * 7 6 5 9 9 N 1.31786 * 120.92176 * 179.97438 * 8 7 6 10 10 C 1.31709 * 122.02620 * 359.97438 * 9 8 7 11 11 C 1.39644 * 120.82078 * 359.71947 * 10 9 8 12 12 C 1.47742 * 120.50350 * 180.31142 * 11 10 9 13 13 O 1.21470 * 119.99728 * 180.25349 * 12 11 10 14 14 O 1.34700 * 120.00166 * 0.24458 * 12 11 10 15 15 C 1.45204 * 117.00238 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47359 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47003 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47453 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00275 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47106 * 120.00396 * 22 20 18 25 25 H 1.48501 * 109.47073 * 239.99979 * 22 20 18 26 26 C 1.39469 * 120.46620 * 359.72805 * 7 6 5 27 27 C 1.37996 * 119.93876 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47364 * 270.02301 * 1 2 3 29 29 H 1.09010 * 109.47033 * 30.02072 * 1 2 3 30 30 H 1.09002 * 109.47595 * 150.01747 * 1 2 3 31 31 H 1.08000 * 119.88386 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.93587 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.06279 * 180.27605 * 5 4 3 34 34 H 1.07996 * 119.53846 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.59150 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47054 * 300.01151 * 15 14 12 37 37 H 1.09006 * 109.46592 * 60.00159 * 15 14 12 38 38 H 1.08993 * 109.47237 * 300.00466 * 16 15 14 39 39 H 1.09000 * 109.46960 * 60.00837 * 16 15 14 40 40 H 1.09007 * 109.47374 * 300.00332 * 17 16 15 41 41 H 1.09006 * 109.46940 * 60.00094 * 17 16 15 42 42 H 0.97006 * 119.99783 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.90942 * 0.02562 * 26 7 6 44 44 H 1.07996 * 120.06022 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0058 6 6 3.5892 -1.1944 0.0005 7 6 4.3352 -2.4773 0.0010 8 6 3.6517 -3.6927 0.0009 9 7 4.3051 -4.8372 0.0008 10 6 5.6212 -4.8901 0.0003 11 6 6.3842 -3.7205 -0.0060 12 6 7.8601 -3.7881 -0.0135 13 8 8.5148 -2.7649 -0.0143 14 8 8.4796 -4.9841 -0.0192 15 6 9.9316 -4.9745 -0.0269 16 6 10.4511 -6.4135 -0.0332 17 6 11.9811 -6.4033 -0.0407 18 6 12.4930 -7.8207 -0.0475 19 1 11.7966 -8.6463 -0.0470 20 6 13.8501 -8.0635 -0.0555 21 7 14.6980 -7.0582 -0.0566 22 14 14.4845 -9.8205 -0.0647 23 1 13.3357 -10.7616 -0.0624 24 1 15.3047 -10.0442 -1.2822 25 1 15.3174 -10.0523 1.1427 26 6 5.7299 -2.4842 0.0010 27 6 2.1957 -1.1958 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6545 2.1324 -0.0004 32 1 4.1145 2.1448 0.0010 33 1 5.3594 0.0225 0.0108 34 1 2.5717 -3.6962 0.0009 35 1 6.1164 -5.8499 -0.0002 36 1 10.2867 -4.4563 -0.9176 37 1 10.2961 -4.4600 0.8623 38 1 10.0960 -6.9320 0.8574 39 1 10.0866 -6.9275 -0.9226 40 1 12.3367 -5.8847 -0.9311 41 1 12.3453 -5.8893 0.8489 42 1 15.6529 -7.2291 -0.0626 43 1 6.2893 -1.5604 0.0011 44 1 1.6557 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768681730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:04 Heat of formation + Delta-G solvation = -48.001394 kcal Electronic energy + Delta-G solvation = -24877.344803 eV Core-core repulsion = 21144.740402 eV Total energy + Delta-G solvation = -3732.604400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10012 -40.02742 -39.19976 -36.55600 -34.36531 -34.01798 -32.81389 -32.63158 -31.66867 -29.80071 -27.55829 -27.19334 -25.28728 -24.43241 -23.34693 -22.57976 -21.30004 -20.67651 -20.31758 -18.22768 -17.69025 -16.92361 -16.62403 -16.47199 -16.40106 -15.97591 -15.41929 -15.06488 -14.64201 -14.47551 -14.21731 -14.17530 -13.91679 -13.83052 -13.34083 -13.20407 -12.83595 -12.61822 -12.55209 -12.23423 -12.20482 -11.93452 -11.71894 -11.44638 -11.00487 -10.84490 -10.68165 -10.62496 -10.53561 -10.45913 -9.98028 -9.86946 -9.75228 -9.53528 -9.19583 -9.16787 -8.58905 -8.40386 -6.04957 -4.08010 0.01530 0.41108 0.93799 1.36986 2.43639 2.64765 3.24264 3.29546 3.37123 3.41430 3.61884 3.89219 4.06383 4.25820 4.37610 4.40273 4.42343 4.45147 4.60940 4.75046 4.80073 4.84909 4.95327 5.11852 5.14109 5.23941 5.31279 5.35395 5.49263 5.53008 5.54567 5.58168 5.65266 5.69039 5.96033 5.98660 6.09528 6.12753 6.16189 6.38122 6.50550 6.51925 6.75958 6.94778 7.45645 7.58427 7.68792 7.76035 7.93292 8.34088 8.98448 9.56586 11.06461 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036159 B = 0.001725 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.173741 B =16225.311604 C =16968.369058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.037 4.037 7 C -0.109 4.109 8 C 0.137 3.863 9 N -0.484 5.484 10 C 0.160 3.840 11 C -0.166 4.166 12 C 0.509 3.491 13 O -0.505 6.505 14 O -0.351 6.351 15 C 0.069 3.931 16 C -0.109 4.109 17 C 0.023 3.977 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.007 4.007 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.152 0.848 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.725 15.906 0.180 33.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.038 4.038 7 C -0.111 4.111 8 C -0.020 4.020 9 N -0.192 5.192 10 C 0.002 3.998 11 C -0.170 4.170 12 C 0.352 3.648 13 O -0.394 6.394 14 O -0.267 6.267 15 C -0.003 4.003 16 C -0.147 4.147 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.032 4.032 27 C -0.128 4.128 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.181 0.819 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.169 0.831 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -29.766 15.426 0.178 33.526 hybrid contribution 1.228 0.050 -0.002 1.229 sum -28.537 15.475 0.175 32.464 Atomic orbital electron populations 1.20819 0.90851 1.03021 1.02562 1.19857 0.96259 0.92879 0.99326 1.21151 0.94300 0.97633 1.00471 1.21110 0.94246 0.98036 0.99434 1.21281 1.00285 0.91682 0.99954 1.18510 0.92892 0.91281 1.01083 1.19678 0.93030 0.94294 1.04103 1.23199 1.00772 0.86659 0.91357 1.67809 1.09548 1.28845 1.12950 1.23411 0.88984 0.98478 0.88892 1.20221 0.91578 0.95594 1.09570 1.20773 0.88152 0.82489 0.73343 1.90837 1.67101 1.35840 1.45645 1.86526 1.25784 1.31346 1.83039 1.23596 0.72797 1.01528 1.02408 1.21785 0.99756 0.91033 1.02126 1.19065 0.86797 0.97788 0.97738 1.21208 0.91682 0.92150 1.50930 0.92323 1.25028 0.97043 0.97217 0.95173 1.69977 1.02250 1.30501 1.50595 0.86490 0.78905 0.84744 0.77602 1.19647 1.20979 1.20973 1.21810 0.93244 0.97908 0.90254 1.21060 0.92782 0.98043 1.00884 0.90960 0.91388 0.91324 0.85875 0.85540 0.85475 0.81911 0.80532 0.91255 0.91249 0.91997 0.91995 0.96188 0.96183 0.92945 0.83070 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.08 -0.54 5.87 -104.67 -0.61 -1.15 16 3 C -0.12 -0.75 9.69 -39.52 -0.38 -1.13 16 4 C -0.11 -0.76 10.03 -39.63 -0.40 -1.16 16 5 C -0.11 -0.92 9.44 -39.25 -0.37 -1.29 16 6 C -0.04 -0.31 5.88 -104.90 -0.62 -0.93 16 7 C -0.11 -1.03 5.89 -104.80 -0.62 -1.64 16 8 C 0.14 1.25 10.59 -17.12 -0.18 1.07 16 9 N -0.48 -5.35 10.33 -12.63 -0.13 -5.48 16 10 C 0.16 1.83 10.78 -17.08 -0.18 1.64 16 11 C -0.17 -2.06 5.89 -104.87 -0.62 -2.68 16 12 C 0.51 7.78 7.91 34.62 0.27 8.06 16 13 O -0.50 -8.85 16.20 -19.24 -0.31 -9.16 16 14 O -0.35 -5.67 9.49 -40.49 -0.38 -6.05 16 15 C 0.07 1.25 5.48 37.16 0.20 1.45 16 16 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.01 -0.07 9.07 -38.51 -0.35 -0.42 16 27 C -0.11 -0.77 9.09 -39.26 -0.36 -1.13 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.23 8.09 -51.92 -0.42 -0.19 16 30 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 34 H 0.16 0.99 6.21 -52.49 -0.33 0.66 16 35 H 0.18 1.84 7.61 -52.48 -0.40 1.44 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.15 1.52 5.99 -52.49 -0.31 1.21 16 44 H 0.13 0.64 6.23 -52.49 -0.33 0.31 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -32.36 378.48 -9.84 -42.20 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.88 Total: -2.99 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -4.55 Total: -14.75 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.61 Total: -31.42 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.70 Total: -15.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.36 -9.84 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768681730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.803 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds