Wall clock time and date at job start Tue Mar 31 2020 14:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38340 * 119.93721 * 2 1 4 4 C 1.38306 * 120.23759 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.12136 * 359.77080 * 4 3 2 6 6 C 1.39310 * 119.87424 * 0.48088 * 5 4 3 7 7 C 1.48409 * 120.11718 * 179.76789 * 6 5 4 8 8 C 1.39448 * 120.46686 * 179.75230 * 7 6 5 9 9 N 1.31786 * 120.92176 * 179.97438 * 8 7 6 10 10 C 1.31709 * 122.02620 * 359.97438 * 9 8 7 11 11 C 1.39644 * 120.82078 * 359.71947 * 10 9 8 12 12 C 1.47742 * 120.50350 * 180.31142 * 11 10 9 13 13 O 1.21470 * 119.99728 * 180.25349 * 12 11 10 14 14 O 1.34700 * 120.00166 * 0.24458 * 12 11 10 15 15 C 1.45204 * 117.00238 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47359 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47003 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47453 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00275 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47106 * 120.00396 * 22 20 18 25 25 H 1.48501 * 109.47073 * 239.99979 * 22 20 18 26 26 C 1.39469 * 120.46620 * 359.72805 * 7 6 5 27 27 C 1.37996 * 119.93876 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47364 * 270.02301 * 1 2 3 29 29 H 1.09010 * 109.47033 * 30.02072 * 1 2 3 30 30 H 1.09002 * 109.47595 * 150.01747 * 1 2 3 31 31 H 1.08000 * 119.88386 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.93587 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.06279 * 180.27605 * 5 4 3 34 34 H 1.07996 * 119.53846 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.59150 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47054 * 300.01151 * 15 14 12 37 37 H 1.09006 * 109.46592 * 60.00159 * 15 14 12 38 38 H 1.08993 * 109.47237 * 300.00466 * 16 15 14 39 39 H 1.09000 * 109.46960 * 60.00837 * 16 15 14 40 40 H 1.09007 * 109.47374 * 300.00332 * 17 16 15 41 41 H 1.09006 * 109.46940 * 60.00094 * 17 16 15 42 42 H 0.97006 * 119.99783 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.90942 * 0.02562 * 26 7 6 44 44 H 1.07996 * 120.06022 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0058 6 6 3.5892 -1.1944 0.0005 7 6 4.3352 -2.4773 0.0010 8 6 3.6517 -3.6927 0.0009 9 7 4.3051 -4.8372 0.0008 10 6 5.6212 -4.8901 0.0003 11 6 6.3842 -3.7205 -0.0060 12 6 7.8601 -3.7881 -0.0135 13 8 8.5148 -2.7649 -0.0143 14 8 8.4796 -4.9841 -0.0192 15 6 9.9316 -4.9745 -0.0269 16 6 10.4511 -6.4135 -0.0332 17 6 11.9811 -6.4033 -0.0407 18 6 12.4930 -7.8207 -0.0475 19 1 11.7966 -8.6463 -0.0470 20 6 13.8501 -8.0635 -0.0555 21 7 14.6980 -7.0582 -0.0566 22 14 14.4845 -9.8205 -0.0647 23 1 13.3357 -10.7616 -0.0624 24 1 15.3047 -10.0442 -1.2822 25 1 15.3174 -10.0523 1.1427 26 6 5.7299 -2.4842 0.0010 27 6 2.1957 -1.1958 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6545 2.1324 -0.0004 32 1 4.1145 2.1448 0.0010 33 1 5.3594 0.0225 0.0108 34 1 2.5717 -3.6962 0.0009 35 1 6.1164 -5.8499 -0.0002 36 1 10.2867 -4.4563 -0.9176 37 1 10.2961 -4.4600 0.8623 38 1 10.0960 -6.9320 0.8574 39 1 10.0866 -6.9275 -0.9226 40 1 12.3367 -5.8847 -0.9311 41 1 12.3453 -5.8893 0.8489 42 1 15.6529 -7.2291 -0.0626 43 1 6.2893 -1.5604 0.0011 44 1 1.6557 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768681730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:03 Heat of formation + Delta-G solvation = -63.331124 kcal Electronic energy + Delta-G solvation = -24878.009550 eV Core-core repulsion = 21144.740402 eV Total energy + Delta-G solvation = -3733.269147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05061 -41.04058 -39.86957 -37.92445 -35.95989 -34.97350 -33.91252 -33.38997 -33.18007 -30.48026 -29.07756 -27.92149 -26.38684 -25.29856 -24.79868 -23.47597 -22.19839 -21.98983 -21.50912 -19.17010 -18.78671 -18.40843 -17.76310 -17.73870 -17.24124 -17.14970 -16.48286 -16.05833 -15.83450 -15.67579 -15.13384 -14.90685 -14.73088 -14.54211 -14.51111 -14.13356 -13.86922 -13.80343 -13.77827 -13.47716 -13.08364 -12.96974 -12.86214 -12.51417 -12.45475 -12.24653 -12.12622 -11.98553 -11.93776 -11.51787 -11.45084 -11.35364 -11.23634 -10.80228 -10.70034 -10.57779 -9.69309 -9.21138 -8.21887 -6.33172 -0.78312 -0.40984 0.43078 0.70868 1.33884 1.39254 1.41827 1.43482 1.55974 2.41377 2.51475 2.95293 3.11748 3.12346 3.30191 3.53225 3.59244 3.61892 3.78751 3.97925 3.98889 4.02839 4.09922 4.22291 4.31537 4.40023 4.44633 4.47392 4.69590 4.77981 4.79494 4.82544 4.89150 4.90148 4.95031 5.06763 5.09406 5.28126 5.30601 5.33515 5.49384 5.50390 5.56232 5.63946 5.65570 5.80400 6.03189 6.18935 6.47204 6.66317 6.82985 7.36519 8.90418 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036159 B = 0.001725 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.173741 B =16225.311604 C =16968.369058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.055 4.055 7 C -0.101 4.101 8 C 0.145 3.855 9 N -0.495 5.495 10 C 0.159 3.841 11 C -0.181 4.181 12 C 0.512 3.488 13 O -0.533 6.533 14 O -0.347 6.347 15 C 0.079 3.921 16 C -0.094 4.094 17 C 0.024 3.976 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.012 4.012 27 C -0.113 4.113 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.197 0.803 35 H 0.183 0.817 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.264 0.736 43 H 0.152 0.848 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.553 15.479 0.178 36.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.056 4.056 7 C -0.103 4.103 8 C -0.012 4.012 9 N -0.203 5.203 10 C 0.002 3.998 11 C -0.184 4.184 12 C 0.357 3.643 13 O -0.424 6.424 14 O -0.263 6.263 15 C 0.005 3.995 16 C -0.132 4.132 17 C -0.013 4.013 18 C -0.580 4.580 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.037 4.037 27 C -0.131 4.131 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.214 0.786 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.169 0.831 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -32.620 14.996 0.175 35.903 hybrid contribution 1.963 0.330 0.000 1.990 sum -30.658 15.327 0.175 34.276 Atomic orbital electron populations 1.20868 0.89074 1.03934 1.03275 1.20200 0.97630 0.92630 0.98491 1.21488 0.94212 0.98713 0.99416 1.21349 0.94850 0.98241 0.99277 1.21424 1.00467 0.92334 1.00668 1.18557 0.93631 0.90700 1.02677 1.19802 0.92322 0.95190 1.03013 1.23744 1.02226 0.85851 0.89358 1.67886 1.09121 1.29715 1.13559 1.23483 0.89330 0.98312 0.88699 1.20053 0.89541 0.96737 1.12108 1.21264 0.89238 0.81596 0.72182 1.90821 1.67904 1.36488 1.47199 1.86502 1.24397 1.32088 1.83301 1.23235 0.74161 0.99882 1.02177 1.21471 0.96231 0.92645 1.02815 1.18952 0.90349 0.96417 0.95560 1.21663 0.92311 0.93354 1.50715 0.91598 1.25994 0.97382 1.01871 0.94621 1.70108 1.02669 1.33007 1.51548 0.85347 0.78460 0.79213 0.77708 1.18357 1.20456 1.20444 1.21910 0.94135 0.97410 0.90275 1.21328 0.92209 0.99331 1.00195 0.90237 0.90516 0.90470 0.83892 0.84144 0.85770 0.78616 0.79988 0.91581 0.91569 0.91235 0.91236 0.98403 0.98393 0.92723 0.83052 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 71.24 0.71 0.11 16 2 C -0.09 -0.93 5.87 -19.90 -0.12 -1.05 16 3 C -0.12 -1.29 9.69 22.31 0.22 -1.08 16 4 C -0.12 -1.52 10.03 22.24 0.22 -1.29 16 5 C -0.13 -2.06 9.44 22.48 0.21 -1.84 16 6 C -0.05 -0.86 5.88 -20.04 -0.12 -0.98 16 7 C -0.10 -1.80 5.89 -19.98 -0.12 -1.91 16 8 C 0.15 2.34 10.59 84.99 0.90 3.24 16 9 N -0.50 -10.18 10.33 -193.87 -2.00 -12.18 16 10 C 0.16 3.53 10.78 85.05 0.92 4.45 16 11 C -0.18 -4.50 5.89 -20.03 -0.12 -4.61 16 12 C 0.51 15.94 7.91 70.34 0.56 16.49 16 13 O -0.53 -19.26 16.20 19.93 0.32 -18.94 16 14 O -0.35 -11.26 9.49 -56.10 -0.53 -11.79 16 15 C 0.08 2.88 5.48 71.98 0.39 3.28 16 16 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 21 N -0.93 -56.70 13.29 21.44 0.28 -56.41 16 22 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 C -0.01 -0.26 9.07 22.96 0.21 -0.05 16 27 C -0.11 -1.33 9.09 22.48 0.20 -1.13 16 28 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.28 8.09 -2.38 -0.02 0.26 16 30 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 31 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.12 1.90 6.27 -2.91 -0.02 1.88 16 34 H 0.20 1.71 6.21 -2.91 -0.02 1.69 16 35 H 0.18 3.70 7.61 -2.91 -0.02 3.68 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 41 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 42 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 43 H 0.15 3.18 5.99 -2.91 -0.02 3.16 16 44 H 0.15 0.99 6.23 -2.91 -0.02 0.98 16 Total: -1.00 -69.81 378.48 6.20 -63.61 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.01 Total: 8.25 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 5.09 Total: -18.58 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.72 Total: -68.59 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.21 Total: -30.73 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.81 6.20 -63.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768681730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds