Wall clock time and date at job start Tue Mar 31 2020 14:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38104 * 119.99032 * 2 1 4 4 C 1.38860 * 119.97899 * 179.97438 * 3 2 1 5 5 N 1.39985 * 120.01583 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99967 * 325.45992 * 5 4 3 7 7 O 1.21610 * 120.00116 * 4.18075 * 6 5 4 8 8 C 1.47592 * 119.99705 * 184.18078 * 6 5 4 9 9 C 1.40037 * 119.90001 * 359.72368 * 8 6 5 10 10 C 1.36302 * 120.10491 * 179.75824 * 9 8 6 11 11 C 1.40896 * 119.89000 * 0.51875 * 10 9 8 12 12 C 1.41098 * 120.09766 * 179.71941 * 11 10 9 13 13 H 1.07997 * 119.99347 * 214.73825 * 12 11 10 14 14 C 1.40220 * 120.00087 * 34.73424 * 12 11 10 15 15 N 1.30649 * 120.00461 * 355.72386 * 14 12 11 16 16 Si 1.86796 * 119.99951 * 175.72216 * 14 12 11 17 17 H 1.48508 * 109.47214 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47309 * 120.00037 * 16 14 12 19 19 H 1.48499 * 109.47168 * 240.00034 * 16 14 12 20 20 C 1.40902 * 119.80154 * 359.73359 * 11 10 9 21 21 C 1.36302 * 119.89129 * 0.02562 * 20 11 10 22 22 C 1.38907 * 119.96998 * 0.27642 * 4 3 2 23 23 C 1.50694 * 120.01148 * 179.72088 * 22 4 3 24 24 C 1.38054 * 119.97404 * 359.44176 * 22 4 3 25 25 C 1.50707 * 119.98670 * 180.27914 * 24 22 4 26 26 C 1.38708 * 119.99420 * 180.02562 * 2 1 3 27 27 O 1.35971 * 119.98098 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.46814 * 90.00645 * 1 2 3 29 29 H 1.08998 * 109.47172 * 210.00039 * 1 2 3 30 30 H 1.09001 * 109.47511 * 330.00437 * 1 2 3 31 31 H 1.07999 * 120.00895 * 359.97263 * 3 2 1 32 32 H 0.96998 * 119.99798 * 145.45938 * 5 4 3 33 33 H 1.08002 * 119.94167 * 359.97438 * 9 8 6 34 34 H 1.07999 * 120.05143 * 180.23235 * 10 9 8 35 35 H 0.96988 * 120.00483 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.05084 * 179.97438 * 20 11 10 37 37 H 1.07993 * 119.94522 * 179.97438 * 21 20 11 38 38 H 1.09004 * 109.47002 * 90.00225 * 23 22 4 39 39 H 1.08996 * 109.46867 * 209.99567 * 23 22 4 40 40 H 1.08997 * 109.47216 * 329.99932 * 23 22 4 41 41 H 1.09002 * 109.46964 * 270.29853 * 25 24 22 42 42 H 1.08997 * 109.47250 * 30.30563 * 25 24 22 43 43 H 1.09003 * 109.46773 * 150.30511 * 25 24 22 44 44 H 0.96698 * 114.00348 * 89.99879 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1961 0.0000 4 6 3.5859 1.1959 0.0005 5 7 4.2864 2.4078 0.0000 6 6 3.7914 3.4720 -0.6627 7 8 2.7008 3.4026 -1.1962 8 6 4.5731 4.7214 -0.7409 9 6 5.8262 4.8008 -0.1209 10 6 6.5538 5.9511 -0.1947 11 6 6.0384 7.0648 -0.8869 12 6 6.7853 8.2595 -0.9610 13 1 6.2796 9.2137 -0.9538 14 6 8.1841 8.2079 -1.0438 15 7 8.8011 7.0588 -0.9683 16 14 9.1655 9.7823 -1.2622 17 1 8.2374 10.9402 -1.3196 18 1 10.0954 9.9489 -0.1164 19 1 9.9439 9.7093 -2.5247 20 6 4.7748 6.9819 -1.5047 21 6 4.0565 5.8259 -1.4298 22 6 4.2795 -0.0076 -0.0047 23 6 5.7865 -0.0090 -0.0105 24 6 3.5879 -1.2024 0.0012 25 6 4.3403 -2.5082 0.0018 26 6 2.2004 -1.2013 -0.0005 27 8 1.5200 -2.3786 -0.0016 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6573 2.1314 -0.0004 32 1 5.1280 2.4818 0.4766 33 1 6.2182 3.9481 0.4136 34 1 7.5218 6.0101 0.2806 35 1 9.7687 7.0231 -1.0252 36 1 4.3756 7.8332 -2.0359 37 1 3.0877 5.7616 -1.9026 38 1 6.1537 -0.0116 1.0158 39 1 6.1470 -0.8982 -0.5276 40 1 6.1487 0.8818 -0.5238 41 1 4.5223 -2.8231 -1.0257 42 1 5.2924 -2.3788 0.5164 43 1 3.7500 -3.2673 0.5152 44 1 1.3235 -2.7185 -0.8853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774823567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:03 Heat of formation + Delta-G solvation = -51.237813 kcal Electronic energy + Delta-G solvation = -26403.428263 eV Core-core repulsion = 22670.683521 eV Total energy + Delta-G solvation = -3732.744742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59154 -39.14446 -37.47326 -36.64039 -34.26569 -34.07365 -33.85469 -30.76800 -29.71918 -29.54594 -29.14604 -26.87461 -25.91310 -24.74670 -22.83504 -21.36702 -20.92167 -20.50253 -19.55576 -17.97482 -17.64587 -17.42572 -16.27387 -15.91408 -15.51068 -15.32744 -14.52705 -14.23622 -14.08854 -13.74176 -13.52857 -13.45987 -13.24728 -13.18625 -12.87953 -12.83321 -12.76362 -12.36998 -12.21707 -12.01102 -11.91586 -11.71269 -11.61210 -11.56438 -11.33559 -11.28381 -10.98157 -10.67836 -10.38976 -10.06402 -9.72593 -9.64540 -9.50775 -9.09271 -8.36270 -7.84985 -7.73605 -7.47273 -6.95523 -4.71299 1.26259 1.40252 2.08835 2.87627 2.92388 2.94162 2.99120 3.48713 3.55044 3.73527 3.87415 4.28045 4.51692 4.78086 4.81519 5.10150 5.19573 5.27175 5.42583 5.49806 5.51141 5.59414 5.62104 5.66391 5.71771 5.80435 5.84795 5.92037 5.96157 6.07400 6.20246 6.26234 6.32975 6.51262 6.61551 6.67810 6.70559 6.80308 6.91036 7.04918 7.15419 7.37843 7.51459 7.67355 7.68377 7.80502 7.98099 8.01080 8.35452 8.58587 8.66412 8.80909 9.92926 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.002558 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.098073 B =10941.437426 C =11928.271933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.113 4.113 4 C 0.163 3.837 5 N -0.679 5.679 6 C 0.570 3.430 7 O -0.553 6.553 8 C -0.275 4.275 9 C -0.068 4.068 10 C -0.165 4.165 11 C 0.127 3.873 12 C -0.445 4.445 13 H 0.084 0.916 14 C 0.069 3.931 15 N -0.789 5.789 16 Si 0.921 3.079 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.228 4.228 21 C -0.026 4.026 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.109 4.109 26 C 0.075 3.925 27 O -0.494 6.494 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.409 0.591 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.284 0.716 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -13.671 2.194 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.133 4.133 4 C 0.068 3.932 5 N -0.324 5.324 6 C 0.367 3.633 7 O -0.434 6.434 8 C -0.280 4.280 9 C -0.088 4.088 10 C -0.184 4.184 11 C 0.124 3.876 12 C -0.474 4.474 13 H 0.102 0.898 14 C -0.150 4.150 15 N -0.414 5.414 16 Si 0.745 3.255 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.248 4.248 21 C -0.045 4.045 22 C -0.116 4.116 23 C -0.172 4.172 24 C -0.092 4.092 25 C -0.166 4.166 26 C 0.030 3.970 27 O -0.303 6.303 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.246 0.754 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.907 -13.672 2.411 14.725 hybrid contribution 0.998 0.599 -0.511 1.272 sum -3.909 -13.073 1.900 13.776 Atomic orbital electron populations 1.20641 0.90785 1.02837 1.02166 1.20036 0.96562 0.92004 1.01030 1.21137 0.92593 0.98487 1.01088 1.17650 0.91274 0.85168 0.99128 1.43637 1.25982 1.09448 1.53346 1.18767 0.85404 0.83093 0.76030 1.90638 1.21614 1.83435 1.47685 1.18872 0.98530 0.94086 1.16496 1.20555 0.93301 0.97231 0.97680 1.21276 1.01162 0.93427 1.02585 1.17886 0.90377 0.93214 0.86146 1.19841 0.91064 0.94290 1.42189 0.89791 1.26074 0.98434 0.98107 0.92345 1.69668 1.11030 1.26090 1.34632 0.86042 0.79485 0.81185 0.78813 1.18226 1.19601 1.19620 1.20866 0.98773 0.97651 1.07459 1.20378 0.97402 0.91991 0.94750 1.19418 0.96053 0.90884 1.05231 1.20753 0.90874 1.03291 1.02293 1.19721 0.92693 0.94934 1.01869 1.20674 0.99809 0.94028 1.02056 1.17934 0.88975 0.84669 1.05462 1.84786 1.76299 1.36309 1.32903 0.91447 0.91135 0.91512 0.83717 0.75399 0.89256 0.84976 0.90481 0.88093 0.87884 0.91178 0.91073 0.91224 0.91526 0.91346 0.91049 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.79 36.00 0.35 -0.90 16 2 C -0.10 -1.36 5.89 -104.50 -0.62 -1.97 16 3 C -0.11 -1.87 8.34 -39.40 -0.33 -2.20 16 4 C 0.16 2.67 6.29 -83.66 -0.53 2.14 16 5 N -0.68 -11.59 4.69 -10.75 -0.05 -11.64 16 6 C 0.57 11.73 7.61 -12.44 -0.09 11.63 16 7 O -0.55 -12.47 13.73 5.27 0.07 -12.40 16 8 C -0.28 -6.03 5.89 -104.73 -0.62 -6.65 16 9 C -0.07 -1.45 9.47 -39.60 -0.38 -1.83 16 10 C -0.17 -3.91 8.61 -39.27 -0.34 -4.25 16 11 C 0.13 3.14 5.55 -106.80 -0.59 2.54 16 12 C -0.45 -10.83 9.03 -37.75 -0.34 -11.17 16 13 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 14 C 0.07 1.59 5.42 -17.31 -0.09 1.49 16 15 N -0.79 -18.59 10.59 55.56 0.59 -18.00 16 16 Si 0.92 17.23 29.56 -169.99 -5.03 12.21 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 18 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 21 C -0.03 -0.59 9.52 -39.60 -0.38 -0.97 16 22 C -0.11 -1.58 5.89 -104.44 -0.62 -2.19 16 23 C -0.12 -1.32 8.64 36.00 0.31 -1.00 16 24 C -0.09 -1.17 5.89 -104.50 -0.62 -1.79 16 25 C -0.11 -1.06 8.96 36.01 0.32 -0.74 16 26 C 0.07 0.98 6.65 -39.22 -0.26 0.72 16 27 O -0.49 -5.36 11.58 -19.65 -0.23 -5.59 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 30 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.15 2.64 6.19 -52.49 -0.32 2.32 16 32 H 0.41 6.11 5.86 -40.82 -0.24 5.87 16 33 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 34 H 0.13 3.20 6.13 -52.49 -0.32 2.88 16 35 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.70 6.72 -51.93 -0.35 0.35 16 40 H 0.07 0.85 7.17 -51.93 -0.37 0.48 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 43 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 44 H 0.38 2.52 9.06 45.56 0.41 2.93 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -28.42 362.28 -9.09 -37.51 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -4.72 Total: 15.27 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -5.19 Total: -22.82 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.54 Total: -29.64 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.16 Total: -17.98 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.42 -9.09 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774823567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.728 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds