Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38104 * 119.99032 * 2 1 4 4 C 1.38860 * 119.97899 * 179.97438 * 3 2 1 5 5 N 1.39985 * 120.01583 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99967 * 325.45992 * 5 4 3 7 7 O 1.21610 * 120.00116 * 4.18075 * 6 5 4 8 8 C 1.47592 * 119.99705 * 184.18078 * 6 5 4 9 9 C 1.40037 * 119.90001 * 359.72368 * 8 6 5 10 10 C 1.36302 * 120.10491 * 179.75824 * 9 8 6 11 11 C 1.40896 * 119.89000 * 0.51875 * 10 9 8 12 12 C 1.41098 * 120.09766 * 179.71941 * 11 10 9 13 13 H 1.07997 * 119.99347 * 214.73825 * 12 11 10 14 14 C 1.40220 * 120.00087 * 34.73424 * 12 11 10 15 15 N 1.30649 * 120.00461 * 355.72386 * 14 12 11 16 16 Si 1.86796 * 119.99951 * 175.72216 * 14 12 11 17 17 H 1.48508 * 109.47214 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47309 * 120.00037 * 16 14 12 19 19 H 1.48499 * 109.47168 * 240.00034 * 16 14 12 20 20 C 1.40902 * 119.80154 * 359.73359 * 11 10 9 21 21 C 1.36302 * 119.89129 * 0.02562 * 20 11 10 22 22 C 1.38907 * 119.96998 * 0.27642 * 4 3 2 23 23 C 1.50694 * 120.01148 * 179.72088 * 22 4 3 24 24 C 1.38054 * 119.97404 * 359.44176 * 22 4 3 25 25 C 1.50707 * 119.98670 * 180.27914 * 24 22 4 26 26 C 1.38708 * 119.99420 * 180.02562 * 2 1 3 27 27 O 1.35971 * 119.98098 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.46814 * 90.00645 * 1 2 3 29 29 H 1.08998 * 109.47172 * 210.00039 * 1 2 3 30 30 H 1.09001 * 109.47511 * 330.00437 * 1 2 3 31 31 H 1.07999 * 120.00895 * 359.97263 * 3 2 1 32 32 H 0.96998 * 119.99798 * 145.45938 * 5 4 3 33 33 H 1.08002 * 119.94167 * 359.97438 * 9 8 6 34 34 H 1.07999 * 120.05143 * 180.23235 * 10 9 8 35 35 H 0.96988 * 120.00483 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.05084 * 179.97438 * 20 11 10 37 37 H 1.07993 * 119.94522 * 179.97438 * 21 20 11 38 38 H 1.09004 * 109.47002 * 90.00225 * 23 22 4 39 39 H 1.08996 * 109.46867 * 209.99567 * 23 22 4 40 40 H 1.08997 * 109.47216 * 329.99932 * 23 22 4 41 41 H 1.09002 * 109.46964 * 270.29853 * 25 24 22 42 42 H 1.08997 * 109.47250 * 30.30563 * 25 24 22 43 43 H 1.09003 * 109.46773 * 150.30511 * 25 24 22 44 44 H 0.96698 * 114.00348 * 89.99879 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1961 0.0000 4 6 3.5859 1.1959 0.0005 5 7 4.2864 2.4078 0.0000 6 6 3.7914 3.4720 -0.6627 7 8 2.7008 3.4026 -1.1962 8 6 4.5731 4.7214 -0.7409 9 6 5.8262 4.8008 -0.1209 10 6 6.5538 5.9511 -0.1947 11 6 6.0384 7.0648 -0.8869 12 6 6.7853 8.2595 -0.9610 13 1 6.2796 9.2137 -0.9538 14 6 8.1841 8.2079 -1.0438 15 7 8.8011 7.0588 -0.9683 16 14 9.1655 9.7823 -1.2622 17 1 8.2374 10.9402 -1.3196 18 1 10.0954 9.9489 -0.1164 19 1 9.9439 9.7093 -2.5247 20 6 4.7748 6.9819 -1.5047 21 6 4.0565 5.8259 -1.4298 22 6 4.2795 -0.0076 -0.0047 23 6 5.7865 -0.0090 -0.0105 24 6 3.5879 -1.2024 0.0012 25 6 4.3403 -2.5082 0.0018 26 6 2.2004 -1.2013 -0.0005 27 8 1.5200 -2.3786 -0.0016 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6573 2.1314 -0.0004 32 1 5.1280 2.4818 0.4766 33 1 6.2182 3.9481 0.4136 34 1 7.5218 6.0101 0.2806 35 1 9.7687 7.0231 -1.0252 36 1 4.3756 7.8332 -2.0359 37 1 3.0877 5.7616 -1.9026 38 1 6.1537 -0.0116 1.0158 39 1 6.1470 -0.8982 -0.5276 40 1 6.1487 0.8818 -0.5238 41 1 4.5223 -2.8231 -1.0257 42 1 5.2924 -2.3788 0.5164 43 1 3.7500 -3.2673 0.5152 44 1 1.3235 -2.7185 -0.8853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774823567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = -66.376719 kcal Electronic energy + Delta-G solvation = -26404.084735 eV Core-core repulsion = 22670.683521 eV Total energy + Delta-G solvation = -3733.401214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83784 -40.51234 -39.07927 -37.84838 -35.67626 -35.42802 -35.17411 -32.32891 -31.35194 -30.88221 -30.20411 -28.05124 -27.40855 -25.79862 -24.31913 -22.96965 -22.49617 -21.63487 -20.98528 -19.40716 -19.05747 -18.76741 -17.60398 -17.21269 -17.07159 -16.38884 -15.98410 -15.81166 -15.66979 -15.04966 -14.84482 -14.62543 -14.47743 -14.35239 -14.11809 -13.95120 -13.82679 -13.67820 -13.58475 -13.34002 -13.27875 -12.91061 -12.85128 -12.72407 -12.62661 -12.47624 -12.38668 -12.32449 -11.74266 -11.42351 -11.37634 -11.20417 -11.02016 -10.66038 -9.62744 -9.43148 -9.37187 -8.84949 -8.67551 -6.54516 0.06128 0.30906 0.46303 1.10268 1.40366 1.41089 1.55191 2.02653 2.14749 2.18576 2.58382 2.79807 3.34404 3.60798 3.78554 3.81835 4.05839 4.09012 4.23521 4.31134 4.35866 4.40708 4.60748 4.65985 4.74257 4.76018 4.84008 4.85578 4.90056 4.92833 4.99208 5.03638 5.10620 5.14282 5.25745 5.28551 5.31079 5.46421 5.55366 5.57608 5.59728 5.75720 5.89630 5.97990 5.99991 6.21461 6.50179 6.55278 6.78389 6.85495 6.88527 7.24720 8.23596 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.002558 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.098073 B =10941.437426 C =11928.271933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.131 3.869 5 N -0.664 5.664 6 C 0.571 3.429 7 O -0.578 6.578 8 C -0.280 4.280 9 C -0.059 4.059 10 C -0.184 4.184 11 C 0.100 3.900 12 C -0.477 4.477 13 H 0.083 0.917 14 C 0.032 3.968 15 N -0.815 5.815 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.261 1.261 19 H -0.267 1.267 20 C -0.240 4.240 21 C -0.036 4.036 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.095 4.095 25 C -0.106 4.106 26 C 0.084 3.916 27 O -0.493 6.493 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.418 0.582 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.293 0.707 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 -15.902 2.433 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.154 4.154 4 C 0.037 3.963 5 N -0.309 5.309 6 C 0.367 3.633 7 O -0.461 6.461 8 C -0.285 4.285 9 C -0.077 4.077 10 C -0.204 4.204 11 C 0.097 3.903 12 C -0.505 4.505 13 H 0.102 0.898 14 C -0.184 4.184 15 N -0.440 5.440 16 Si 0.812 3.188 17 H -0.182 1.182 18 H -0.186 1.186 19 H -0.191 1.191 20 C -0.259 4.259 21 C -0.055 4.055 22 C -0.113 4.113 23 C -0.172 4.172 24 C -0.096 4.096 25 C -0.162 4.162 26 C 0.039 3.961 27 O -0.305 6.305 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.257 0.743 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.964 -15.957 2.659 16.656 hybrid contribution 0.582 1.061 -0.571 1.338 sum -3.383 -14.896 2.088 15.418 Atomic orbital electron populations 1.20656 0.89269 1.03250 1.02894 1.20288 0.97851 0.91784 1.00986 1.21037 0.93029 0.98424 1.02930 1.17872 0.91405 0.85439 1.01630 1.43340 1.26082 1.09093 1.52425 1.18564 0.84936 0.83522 0.76301 1.90626 1.22539 1.83964 1.48948 1.19130 0.98871 0.94598 1.15864 1.20801 0.92561 0.97568 0.96819 1.21286 1.01353 0.94269 1.03444 1.18223 0.91082 0.94124 0.86876 1.20071 0.92284 0.94218 1.43939 0.89848 1.26897 0.98753 1.01336 0.91454 1.69703 1.11829 1.27818 1.34628 0.84990 0.77822 0.76976 0.78978 1.18175 1.18584 1.19142 1.21002 0.98790 0.98258 1.07866 1.20524 0.97621 0.92265 0.95111 1.19694 0.97445 0.90208 1.03981 1.20833 0.88997 1.03793 1.03581 1.20128 0.92875 0.95974 1.00611 1.20737 0.99996 0.92136 1.03322 1.18006 0.89361 0.84965 1.03792 1.84728 1.75940 1.35032 1.34830 0.90504 0.89823 0.91950 0.86370 0.74328 0.85810 0.85774 0.89589 0.87394 0.87558 0.89408 0.89005 0.92285 0.89935 0.90078 0.90493 0.73897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 9.79 71.23 0.70 -1.63 16 2 C -0.11 -3.00 5.89 -19.79 -0.12 -3.12 16 3 C -0.13 -4.51 8.34 22.39 0.19 -4.33 16 4 C 0.13 4.24 6.29 38.15 0.24 4.48 16 5 N -0.66 -22.56 4.69 -306.19 -1.44 -24.00 16 6 C 0.57 23.87 7.61 86.71 0.66 24.53 16 7 O -0.58 -26.88 13.73 -4.06 -0.06 -26.93 16 8 C -0.28 -12.46 5.89 -19.94 -0.12 -12.58 16 9 C -0.06 -2.50 9.47 22.25 0.21 -2.29 16 10 C -0.18 -8.90 8.61 22.47 0.19 -8.71 16 11 C 0.10 5.10 5.55 -21.27 -0.12 4.98 16 12 C -0.48 -23.81 9.03 23.45 0.21 -23.59 16 13 H 0.08 4.01 7.85 -2.91 -0.02 3.98 16 14 C 0.03 1.47 5.42 85.35 0.46 1.93 16 15 N -0.81 -38.63 10.59 21.87 0.23 -38.40 16 16 Si 0.99 35.08 29.56 68.60 2.03 37.11 16 17 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 18 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 19 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 20 C -0.24 -11.58 9.73 22.47 0.22 -11.37 16 21 C -0.04 -1.68 9.52 22.26 0.21 -1.47 16 22 C -0.11 -2.88 5.89 -19.75 -0.12 -3.00 16 23 C -0.12 -2.32 8.64 71.23 0.62 -1.70 16 24 C -0.09 -2.18 5.89 -19.78 -0.12 -2.30 16 25 C -0.11 -1.64 8.96 71.24 0.64 -1.00 16 26 C 0.08 2.03 6.65 22.51 0.15 2.18 16 27 O -0.49 -9.12 11.58 -93.22 -1.08 -10.20 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.62 7.53 -2.39 -0.02 1.60 16 30 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.12 4.56 6.19 -2.91 -0.02 4.54 16 32 H 0.42 12.13 5.86 -92.71 -0.54 11.58 16 33 H 0.12 4.27 6.38 -2.91 -0.02 4.25 16 34 H 0.12 6.15 6.13 -2.91 -0.02 6.14 16 35 H 0.29 12.42 8.29 -92.72 -0.77 11.65 16 36 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.11 4.79 7.63 -2.91 -0.02 4.77 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.46 6.72 -2.39 -0.02 1.45 16 40 H 0.06 1.32 7.17 -2.39 -0.02 1.30 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.08 6.72 -2.39 -0.02 1.06 16 43 H 0.08 1.14 7.53 -2.39 -0.02 1.13 16 44 H 0.40 3.88 9.06 -74.06 -0.67 3.21 16 Total: -1.00 -62.95 362.28 3.65 -59.29 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.15 Total: 42.11 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 4.11 Total: -38.98 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.20 Total: -62.40 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.14 Total: -37.14 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -62.95 3.65 -59.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774823567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.082 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds