Wall clock time and date at job start Tue Mar 31 2020 13:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99725 * 2 1 4 4 H 1.48508 * 109.46785 * 269.99455 * 3 2 1 5 5 H 1.48498 * 109.47598 * 29.99973 * 3 2 1 6 6 H 1.48502 * 109.47239 * 150.00429 * 3 2 1 7 7 C 1.37876 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99693 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47203 * 180.02562 * 11 10 9 13 13 C 1.34768 * 116.99688 * 180.02562 * 12 11 10 14 14 O 1.21526 * 120.00606 * 359.97438 * 13 12 11 15 15 C 1.47302 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.39795 * 120.20928 * 6.34361 * 15 13 12 17 17 C 1.37727 * 119.91587 * 180.02562 * 16 15 13 18 18 C 1.38627 * 120.36915 * 0.02562 * 17 16 15 19 19 C 1.37948 * 120.43341 * 359.67359 * 18 17 16 20 20 C 1.38969 * 120.06723 * 0.60396 * 19 18 17 21 21 N 1.38898 * 120.18123 * 179.69963 * 20 19 18 22 22 C 1.39732 * 119.99525 * 257.47309 * 21 20 19 23 23 C 1.38918 * 120.07251 * 175.83152 * 22 21 20 24 24 C 1.38097 * 119.92479 * 180.25095 * 23 22 21 25 25 C 1.38293 * 120.07443 * 359.44862 * 24 23 22 26 26 C 1.38294 * 120.15117 * 0.54706 * 25 24 23 27 27 C 1.38096 * 120.07204 * 359.73286 * 26 25 24 28 28 H 0.97003 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47070 * 59.99965 * 9 7 2 30 30 H 1.08999 * 109.47485 * 300.00595 * 9 7 2 31 31 H 1.09003 * 109.47143 * 60.00537 * 10 9 7 32 32 H 1.08995 * 109.47599 * 300.00223 * 10 9 7 33 33 H 1.09008 * 109.46913 * 60.00114 * 11 10 9 34 34 H 1.08995 * 109.47042 * 300.00670 * 11 10 9 35 35 H 1.08001 * 120.04047 * 359.97438 * 16 15 13 36 36 H 1.08002 * 119.81477 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.78462 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.97074 * 180.30309 * 19 18 17 39 39 H 0.96994 * 120.00192 * 77.46966 * 21 20 19 40 40 H 1.08007 * 120.04171 * 359.97438 * 23 22 21 41 41 H 1.07997 * 119.96465 * 179.69364 * 24 23 22 42 42 H 1.08000 * 119.92454 * 180.28114 * 25 24 23 43 43 H 1.07993 * 119.96255 * 179.75072 * 26 25 24 44 44 H 1.07999 * 120.03607 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5516 -2.6365 0.0001 12 8 6.0356 -4.0054 0.0009 13 6 7.3717 -4.1819 0.0005 14 8 8.1120 -3.2182 -0.0009 15 6 7.9348 -5.5430 0.0006 16 6 7.0941 -6.6520 -0.1324 17 6 7.6270 -7.9220 -0.1309 18 6 8.9943 -8.1082 0.0023 19 6 9.8381 -7.0242 0.1282 20 6 9.3192 -5.7350 0.1349 21 7 10.1661 -4.6422 0.2678 22 6 10.2694 -3.9838 1.4960 23 6 11.1790 -2.9459 1.6551 24 6 11.2822 -2.3008 2.8718 25 6 10.4732 -2.6793 3.9277 26 6 9.5666 -3.7119 3.7727 27 6 9.4623 -4.3651 2.5605 28 1 -0.4850 0.8401 -0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.6580 -3.1513 -0.8880 32 1 3.6586 -3.1494 0.8920 33 1 5.9156 -2.1215 0.8893 34 1 5.9142 -2.1237 -0.8907 35 1 6.0280 -6.5131 -0.2352 36 1 6.9760 -8.7777 -0.2334 37 1 9.4021 -9.1083 0.0017 38 1 10.9026 -7.1777 0.2266 39 1 10.6858 -4.3361 -0.4918 40 1 11.8080 -2.6469 0.8296 41 1 11.9926 -1.4972 2.9977 42 1 10.5528 -2.1700 4.8768 43 1 8.9392 -4.0076 4.6005 44 1 8.7543 -5.1718 2.4402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791205804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:14 Heat of formation + Delta-G solvation = -29.519498 kcal Electronic energy + Delta-G solvation = -26437.718760 eV Core-core repulsion = 22705.915795 eV Total energy + Delta-G solvation = -3731.802965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91497 -39.48623 -38.68355 -36.46904 -35.46360 -34.05707 -32.06186 -31.51488 -31.11165 -30.60413 -28.33205 -27.56394 -24.60695 -23.33247 -22.85808 -22.48622 -21.53563 -20.70514 -20.20265 -18.02427 -17.75366 -17.41837 -16.93844 -16.41379 -16.28092 -16.00095 -15.41945 -15.15049 -14.54442 -14.33337 -14.19205 -14.06261 -13.97426 -13.42301 -13.23494 -13.06902 -12.83227 -12.74415 -12.30579 -12.23297 -11.94036 -11.81622 -11.50634 -11.06844 -11.04368 -10.94747 -10.80290 -10.42005 -10.23984 -9.96348 -9.78274 -9.71501 -9.39247 -9.24835 -9.19296 -8.94937 -8.56700 -7.60953 -6.07075 -4.06028 0.39451 0.89259 1.41175 1.59379 2.53005 2.78898 3.13362 3.30079 3.37706 3.41769 3.45415 3.87875 4.43222 4.48728 4.57540 4.65832 4.82925 4.93226 4.98824 5.05603 5.09319 5.16563 5.26371 5.42722 5.47456 5.49269 5.52166 5.56094 5.71557 5.85268 5.86736 5.94943 5.97581 6.03949 6.23365 6.35036 6.39043 6.39474 6.44892 6.59781 6.67559 6.80389 6.81151 7.21339 7.30317 7.32830 7.48112 7.72716 7.91659 8.49727 8.97089 9.54603 11.06087 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003070 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.830189 B = 9118.002611 C =10794.408264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.070 3.930 12 O -0.354 6.354 13 C 0.498 3.502 14 O -0.489 6.489 15 C -0.129 4.129 16 C -0.055 4.055 17 C -0.133 4.133 18 C -0.080 4.080 19 C -0.136 4.136 20 C 0.208 3.792 21 N -0.693 5.693 22 C 0.235 3.765 23 C -0.185 4.185 24 C -0.076 4.076 25 C -0.177 4.177 26 C -0.074 4.074 27 C -0.189 4.189 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.410 0.590 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.931 -16.062 2.388 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.003 4.003 12 O -0.271 6.271 13 C 0.342 3.658 14 O -0.377 6.377 15 C -0.132 4.132 16 C -0.074 4.074 17 C -0.151 4.151 18 C -0.098 4.098 19 C -0.156 4.156 20 C 0.113 3.887 21 N -0.321 5.321 22 C 0.135 3.865 23 C -0.207 4.207 24 C -0.095 4.095 25 C -0.196 4.196 26 C -0.093 4.093 27 C -0.211 4.211 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.248 0.752 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.859 -15.714 2.411 29.508 hybrid contribution 0.407 1.239 -0.403 1.365 sum 25.266 -14.475 2.008 29.187 Atomic orbital electron populations 1.69907 1.06275 1.26975 1.50883 1.25009 0.94752 0.99161 0.94452 0.86795 0.80423 0.83601 0.78606 1.20209 1.21248 1.18952 1.21051 0.89028 0.94661 1.51181 0.90793 1.19516 0.97519 0.91071 0.96664 1.21555 0.88726 1.00792 1.02756 1.23470 0.96947 0.77904 1.02028 1.86539 1.22678 1.34297 1.83602 1.20882 0.81523 0.89389 0.74024 1.90858 1.60331 1.42121 1.44378 1.19775 0.93704 0.91466 1.08286 1.21553 1.00694 0.91227 0.93901 1.21232 0.95401 0.97261 1.01191 1.21308 0.93457 0.98913 0.96155 1.21411 1.00802 0.91015 1.02327 1.17350 0.87504 0.87564 0.96252 1.41498 1.47906 1.31678 1.11012 1.17584 0.93115 0.91122 0.84658 1.20499 1.02383 0.99069 0.98729 1.20845 0.98066 0.98153 0.92440 1.20905 0.99370 1.00028 0.99341 1.20881 0.97057 0.94931 0.96444 1.20641 1.02551 1.04321 0.93599 0.92643 0.96280 0.96754 0.91588 0.91518 0.91549 0.91657 0.83777 0.84801 0.85026 0.84847 0.75172 0.86375 0.86259 0.86521 0.86295 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.10 -2.03 5.53 -26.73 -0.15 -2.18 16 11 C 0.07 1.26 5.48 37.16 0.20 1.46 16 12 O -0.35 -5.90 9.49 -40.68 -0.39 -6.29 16 13 C 0.50 7.82 7.44 34.42 0.26 8.07 16 14 O -0.49 -8.58 13.52 -19.29 -0.26 -8.84 16 15 C -0.13 -1.59 5.05 -104.81 -0.53 -2.12 16 16 C -0.06 -0.55 9.61 -39.19 -0.38 -0.93 16 17 C -0.13 -0.99 10.02 -39.62 -0.40 -1.38 16 18 C -0.08 -0.53 10.03 -39.54 -0.40 -0.93 16 19 C -0.14 -1.09 9.96 -39.42 -0.39 -1.48 16 20 C 0.21 2.23 4.72 -83.57 -0.39 1.83 16 21 N -0.69 -7.66 4.02 -8.23 -0.03 -7.69 16 22 C 0.23 2.95 5.03 -83.75 -0.42 2.53 16 23 C -0.18 -2.15 9.90 -39.38 -0.39 -2.54 16 24 C -0.08 -0.85 10.04 -39.61 -0.40 -1.24 16 25 C -0.18 -2.01 10.04 -39.54 -0.40 -2.41 16 26 C -0.07 -0.90 10.04 -39.61 -0.40 -1.30 16 27 C -0.19 -2.48 8.69 -39.38 -0.34 -2.82 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.46 7.20 -51.92 -0.37 0.08 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.14 1.42 7.63 -52.49 -0.40 1.01 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.41 3.89 8.84 -40.82 -0.36 3.53 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.11 1.50 6.47 -52.49 -0.34 1.16 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -33.40 372.91 -10.12 -43.52 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.10 Total: 2.74 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -5.06 Total: -19.18 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.74 Total: -34.81 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.65 Total: -15.13 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.40 -10.12 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791205804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.002 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds