Wall clock time and date at job start Tue Mar 31 2020 13:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99725 * 2 1 4 4 H 1.48508 * 109.46785 * 269.99455 * 3 2 1 5 5 H 1.48498 * 109.47598 * 29.99973 * 3 2 1 6 6 H 1.48502 * 109.47239 * 150.00429 * 3 2 1 7 7 C 1.37876 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99693 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47203 * 180.02562 * 11 10 9 13 13 C 1.34768 * 116.99688 * 180.02562 * 12 11 10 14 14 O 1.21526 * 120.00606 * 359.97438 * 13 12 11 15 15 C 1.47302 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.39795 * 120.20928 * 6.34361 * 15 13 12 17 17 C 1.37727 * 119.91587 * 180.02562 * 16 15 13 18 18 C 1.38627 * 120.36915 * 0.02562 * 17 16 15 19 19 C 1.37948 * 120.43341 * 359.67359 * 18 17 16 20 20 C 1.38969 * 120.06723 * 0.60396 * 19 18 17 21 21 N 1.38898 * 120.18123 * 179.69963 * 20 19 18 22 22 C 1.39732 * 119.99525 * 257.47309 * 21 20 19 23 23 C 1.38918 * 120.07251 * 175.83152 * 22 21 20 24 24 C 1.38097 * 119.92479 * 180.25095 * 23 22 21 25 25 C 1.38293 * 120.07443 * 359.44862 * 24 23 22 26 26 C 1.38294 * 120.15117 * 0.54706 * 25 24 23 27 27 C 1.38096 * 120.07204 * 359.73286 * 26 25 24 28 28 H 0.97003 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47070 * 59.99965 * 9 7 2 30 30 H 1.08999 * 109.47485 * 300.00595 * 9 7 2 31 31 H 1.09003 * 109.47143 * 60.00537 * 10 9 7 32 32 H 1.08995 * 109.47599 * 300.00223 * 10 9 7 33 33 H 1.09008 * 109.46913 * 60.00114 * 11 10 9 34 34 H 1.08995 * 109.47042 * 300.00670 * 11 10 9 35 35 H 1.08001 * 120.04047 * 359.97438 * 16 15 13 36 36 H 1.08002 * 119.81477 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.78462 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.97074 * 180.30309 * 19 18 17 39 39 H 0.96994 * 120.00192 * 77.46966 * 21 20 19 40 40 H 1.08007 * 120.04171 * 359.97438 * 23 22 21 41 41 H 1.07997 * 119.96465 * 179.69364 * 24 23 22 42 42 H 1.08000 * 119.92454 * 180.28114 * 25 24 23 43 43 H 1.07993 * 119.96255 * 179.75072 * 26 25 24 44 44 H 1.07999 * 120.03607 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5516 -2.6365 0.0001 12 8 6.0356 -4.0054 0.0009 13 6 7.3717 -4.1819 0.0005 14 8 8.1120 -3.2182 -0.0009 15 6 7.9348 -5.5430 0.0006 16 6 7.0941 -6.6520 -0.1324 17 6 7.6270 -7.9220 -0.1309 18 6 8.9943 -8.1082 0.0023 19 6 9.8381 -7.0242 0.1282 20 6 9.3192 -5.7350 0.1349 21 7 10.1661 -4.6422 0.2678 22 6 10.2694 -3.9838 1.4960 23 6 11.1790 -2.9459 1.6551 24 6 11.2822 -2.3008 2.8718 25 6 10.4732 -2.6793 3.9277 26 6 9.5666 -3.7119 3.7727 27 6 9.4623 -4.3651 2.5605 28 1 -0.4850 0.8401 -0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.6580 -3.1513 -0.8880 32 1 3.6586 -3.1494 0.8920 33 1 5.9156 -2.1215 0.8893 34 1 5.9142 -2.1237 -0.8907 35 1 6.0280 -6.5131 -0.2352 36 1 6.9760 -8.7777 -0.2334 37 1 9.4021 -9.1083 0.0017 38 1 10.9026 -7.1777 0.2266 39 1 10.6858 -4.3361 -0.4918 40 1 11.8080 -2.6469 0.8296 41 1 11.9926 -1.4972 2.9977 42 1 10.5528 -2.1700 4.8768 43 1 8.9392 -4.0076 4.6005 44 1 8.7543 -5.1718 2.4402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791205804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:13 Heat of formation + Delta-G solvation = -46.691201 kcal Electronic energy + Delta-G solvation = -26438.463380 eV Core-core repulsion = 22705.915795 eV Total energy + Delta-G solvation = -3732.547586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90081 -40.53369 -39.48647 -37.73790 -36.35005 -35.89724 -33.93238 -32.48721 -31.92976 -31.41329 -29.52929 -28.99739 -25.80720 -24.42553 -24.05549 -23.32344 -22.51019 -22.13005 -21.54567 -19.03564 -19.00570 -18.61118 -18.30087 -17.62806 -17.60154 -16.84748 -16.39908 -16.14334 -15.88181 -15.74234 -15.35232 -15.01505 -14.82948 -14.76872 -14.39531 -14.29258 -14.07103 -13.93685 -13.79353 -13.38884 -13.01747 -12.86799 -12.64463 -12.50756 -12.31357 -12.14333 -12.03841 -11.89520 -11.79032 -11.67773 -11.44356 -11.39595 -11.03854 -10.79966 -10.10851 -9.89474 -9.83610 -8.45603 -8.32598 -6.37596 -0.41279 0.22281 0.52253 0.72337 1.34303 1.36066 1.47851 1.50951 1.59885 2.33348 2.35983 2.70011 2.99858 3.02345 3.56415 3.83498 3.94352 3.98006 3.98851 4.07557 4.10098 4.30079 4.32357 4.34032 4.35855 4.40627 4.60391 4.65696 4.68849 4.70223 4.85166 4.91863 4.94438 5.12640 5.21678 5.23175 5.33054 5.38608 5.41505 5.44262 5.47790 5.57963 5.59509 5.72183 5.73629 5.99083 6.23167 6.45909 6.66624 6.70275 6.72689 7.26919 8.83930 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003070 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.830189 B = 9118.002611 C =10794.408264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.037 0.963 9 C -0.008 4.008 10 C -0.090 4.090 11 C 0.081 3.919 12 O -0.359 6.359 13 C 0.495 3.505 14 O -0.514 6.514 15 C -0.158 4.158 16 C -0.065 4.065 17 C -0.126 4.126 18 C -0.062 4.062 19 C -0.133 4.133 20 C 0.196 3.804 21 N -0.691 5.691 22 C 0.225 3.775 23 C -0.198 4.198 24 C -0.081 4.081 25 C -0.187 4.187 26 C -0.088 4.088 27 C -0.210 4.210 28 H 0.268 0.732 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.415 0.585 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.602 -16.954 2.343 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.572 4.572 8 H 0.055 0.945 9 C -0.045 4.045 10 C -0.128 4.128 11 C 0.007 3.993 12 O -0.276 6.276 13 C 0.341 3.659 14 O -0.404 6.404 15 C -0.161 4.161 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.081 4.081 19 C -0.153 4.153 20 C 0.102 3.898 21 N -0.319 5.319 22 C 0.124 3.876 23 C -0.220 4.220 24 C -0.099 4.099 25 C -0.207 4.207 26 C -0.107 4.107 27 C -0.232 4.232 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.253 0.747 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 27.543 -16.637 2.355 32.264 hybrid contribution -0.441 1.339 -0.391 1.463 sum 27.102 -15.299 1.964 31.184 Atomic orbital electron populations 1.70051 1.08202 1.28290 1.52290 1.25972 0.95633 1.03409 0.93988 0.85693 0.79480 0.78386 0.79344 1.18988 1.20658 1.17267 1.21377 0.91536 0.93443 1.50845 0.94481 1.19433 0.94464 0.93606 0.97045 1.21309 0.90425 0.98457 1.02582 1.23108 0.95232 0.78939 1.02005 1.86528 1.23942 1.33092 1.83995 1.21561 0.80625 0.90771 0.72987 1.90828 1.60449 1.43218 1.45894 1.19756 0.94733 0.89998 1.11579 1.21641 1.00376 0.91935 0.94397 1.21577 0.96371 0.96825 0.99632 1.21774 0.92854 1.00213 0.93210 1.21669 1.02095 0.90065 1.01432 1.17596 0.86865 0.88541 0.96838 1.41519 1.47817 1.31865 1.10747 1.17771 0.93229 0.91505 0.85057 1.20803 1.02591 0.98991 0.99634 1.21207 0.98183 0.98438 0.92082 1.21202 0.99180 0.99932 1.00394 1.21138 0.97605 0.95306 0.96619 1.20711 1.03181 1.04900 0.94447 0.92321 0.95879 0.95842 0.91672 0.91883 0.91856 0.91397 0.84328 0.81914 0.81197 0.82885 0.74662 0.84851 0.83873 0.84651 0.85238 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.01 0.42 5.47 84.65 0.46 0.89 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.09 -3.67 5.53 30.59 0.17 -3.50 16 11 C 0.08 2.92 5.48 71.98 0.39 3.31 16 12 O -0.36 -12.13 9.49 -56.79 -0.54 -12.67 16 13 C 0.49 15.79 7.44 70.21 0.52 16.31 16 14 O -0.51 -18.34 13.52 19.75 0.27 -18.07 16 15 C -0.16 -3.85 5.05 -19.99 -0.10 -3.95 16 16 C -0.06 -1.24 9.61 22.53 0.22 -1.03 16 17 C -0.13 -1.51 10.02 22.24 0.22 -1.29 16 18 C -0.06 -0.59 10.03 22.29 0.22 -0.37 16 19 C -0.13 -1.79 9.96 22.38 0.22 -1.57 16 20 C 0.20 4.03 4.72 38.73 0.18 4.21 16 21 N -0.69 -15.01 4.02 -179.95 -0.72 -15.74 16 22 C 0.22 5.61 5.03 38.21 0.19 5.80 16 23 C -0.20 -4.47 9.90 22.40 0.22 -4.25 16 24 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 25 C -0.19 -4.10 10.04 22.30 0.22 -3.88 16 26 C -0.09 -2.13 10.04 22.25 0.22 -1.91 16 27 C -0.21 -5.57 8.69 22.40 0.19 -5.37 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.02 1.08 7.20 -2.38 -0.02 1.07 16 30 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.14 2.72 7.63 -2.91 -0.02 2.70 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.41 7.72 8.84 -92.71 -0.82 6.90 16 40 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.11 2.86 6.47 -2.91 -0.02 2.84 16 Total: -1.00 -74.11 372.91 5.49 -68.63 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.13 Total: 20.07 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.16 Total: -29.34 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -0.42 Total: -75.34 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.27 Total: -30.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -74.11 5.49 -68.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791205804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.935 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds