Wall clock time and date at job start Tue Mar 31 2020 14:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38291 * 119.92502 * 2 1 4 4 C 1.38107 * 120.07061 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.92870 * 359.96782 * 4 3 2 6 6 N 1.39829 * 120.07487 * 180.02562 * 5 4 3 7 7 C 1.46494 * 120.00259 * 187.79160 * 6 5 4 8 8 C 1.50705 * 109.47001 * 92.82713 * 7 6 5 9 9 H 1.08000 * 120.00211 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99693 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00310 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99642 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47282 * 90.00364 * 12 10 8 14 14 H 1.48498 * 109.46865 * 210.00057 * 12 10 8 15 15 H 1.48497 * 109.47196 * 329.99713 * 12 10 8 16 16 C 1.34785 * 119.99826 * 8.06629 * 6 5 4 17 17 O 1.21705 * 119.99663 * 6.09414 * 16 6 5 18 18 C 1.46613 * 119.99858 * 186.08964 * 16 6 5 19 19 O 1.34939 * 126.01219 * 5.79391 * 18 16 6 20 20 C 1.33952 * 109.38189 * 179.82495 * 19 18 16 21 21 C 1.35154 * 108.75505 * 0.43984 * 20 19 18 22 22 C 1.36494 * 126.00852 * 186.10336 * 18 16 6 23 23 C 1.51078 * 143.66666 * 0.02562 * 22 18 16 24 24 C 1.54375 * 105.24261 * 197.16083 * 23 22 18 25 25 C 1.51143 * 143.44641 * 179.72482 * 21 20 19 26 26 C 1.38894 * 119.85295 * 0.28344 * 5 4 3 27 27 C 1.38106 * 119.92727 * 359.44500 * 26 5 4 28 28 H 1.08995 * 109.47351 * 90.00509 * 1 2 3 29 29 H 1.08997 * 109.46903 * 210.00388 * 1 2 3 30 30 H 1.09001 * 109.47090 * 330.00213 * 1 2 3 31 31 H 1.07992 * 119.96539 * 359.97438 * 3 2 1 32 32 H 1.08008 * 120.03527 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47375 * 212.82780 * 7 6 5 34 34 H 1.08996 * 109.47313 * 332.82808 * 7 6 5 35 35 H 0.96999 * 120.00048 * 179.97438 * 11 10 8 36 36 H 1.07996 * 125.62766 * 180.20890 * 20 19 18 37 37 H 1.09004 * 110.28891 * 316.09609 * 23 22 18 38 38 H 1.09000 * 110.29338 * 78.12127 * 23 22 18 39 39 H 1.08999 * 110.76479 * 91.85116 * 24 23 22 40 40 H 1.09004 * 110.76553 * 215.04989 * 24 23 22 41 41 H 1.09003 * 110.28459 * 43.89114 * 25 21 20 42 42 H 1.08998 * 110.36729 * 281.83107 * 25 21 20 43 43 H 1.08008 * 120.03392 * 179.72269 * 26 5 4 44 44 H 1.08003 * 119.96178 * 180.27629 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0001 -0.0004 6 7 5.6722 0.0001 -0.0004 7 6 6.4047 -1.2569 -0.1722 8 6 6.7166 -1.4609 -1.6325 9 1 6.4011 -0.7274 -2.3597 10 6 7.4056 -2.5835 -2.0399 11 7 7.7903 -3.4765 -1.1543 12 14 7.7928 -2.8361 -3.8498 13 1 9.1062 -2.2194 -4.1658 14 1 7.8446 -4.2902 -4.1466 15 1 6.7355 -2.1997 -4.6757 16 6 6.3461 1.1558 0.1633 17 8 5.7427 2.1807 0.4214 18 6 7.8060 1.1783 0.0304 19 8 8.5833 0.1459 -0.3582 20 6 9.8655 0.5335 -0.3670 21 6 9.9319 1.8246 0.0273 22 6 8.6186 2.2453 0.2838 23 6 8.6285 3.6883 0.7311 24 6 10.0081 4.2355 0.3062 25 6 10.8869 2.9662 0.2903 26 6 3.5779 -1.2019 -0.0057 27 6 2.1969 -1.1984 0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1161 2.1385 -0.0010 33 1 7.3343 -1.2163 0.3956 34 1 5.7947 -2.0851 0.1882 35 1 8.2747 -4.2664 -1.4410 36 1 10.7077 -0.0848 -0.6401 37 1 7.8326 4.2435 0.2345 38 1 8.5129 3.7495 1.8132 39 1 9.9574 4.6831 -0.6863 40 1 10.3791 4.9562 1.0350 41 1 11.6283 3.0297 -0.5062 42 1 11.3788 2.8349 1.2540 43 1 4.1163 -2.1382 -0.0101 44 1 1.6552 -2.1328 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795789628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:03 Heat of formation + Delta-G solvation = 26.416099 kcal Electronic energy + Delta-G solvation = -27730.653384 eV Core-core repulsion = 24001.275969 eV Total energy + Delta-G solvation = -3729.377416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36374 -40.04814 -37.95029 -37.02766 -35.40307 -32.81583 -31.55371 -30.43297 -30.22598 -29.89638 -27.58414 -27.16689 -25.69358 -23.60903 -22.90987 -21.84811 -21.66062 -20.36959 -19.74553 -18.64661 -16.85292 -16.72395 -16.56268 -15.88887 -15.73401 -15.11663 -14.79683 -14.52626 -14.41025 -14.15755 -13.66405 -13.62237 -13.39043 -13.11900 -12.94708 -12.77954 -12.50605 -12.40145 -11.94399 -11.79810 -11.66844 -11.39254 -11.26215 -11.21445 -11.06966 -11.03159 -11.00179 -10.72914 -10.51721 -10.25816 -10.05134 -9.16558 -9.00113 -8.86962 -8.56328 -8.37241 -8.12777 -7.10699 -6.19666 -4.24991 1.40535 1.98082 2.05221 2.71267 3.20532 3.22969 3.28146 3.33603 3.66005 3.78266 4.30600 4.32852 4.44731 4.89883 5.06585 5.09467 5.14399 5.28232 5.29451 5.34459 5.41643 5.56342 5.61794 5.78149 5.80693 5.81227 5.87027 5.95313 5.97542 6.05809 6.12432 6.16270 6.24863 6.28409 6.37058 6.48195 6.52653 6.74197 6.76301 6.91579 6.93399 7.10264 7.16125 7.28370 7.51011 7.70827 7.77976 7.96342 8.02621 8.59964 8.78779 9.39842 10.87504 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.005496 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.122732 B = 5093.770636 C = 7629.459993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.167 4.167 5 C 0.169 3.831 6 N -0.527 5.527 7 C 0.225 3.775 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.071 3.929 11 N -0.890 5.890 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.600 3.400 17 O -0.527 6.527 18 C -0.046 4.046 19 O -0.093 6.093 20 C 0.013 3.987 21 C -0.237 4.237 22 C -0.126 4.126 23 C -0.049 4.049 24 C -0.118 4.118 25 C -0.041 4.041 26 C -0.142 4.142 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.170 0.830 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.201 0.799 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 8.998 3.690 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.187 4.187 5 C 0.073 3.927 6 N -0.245 5.245 7 C 0.107 3.893 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.132 4.132 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.391 3.609 17 O -0.409 6.409 18 C -0.098 4.098 19 O 0.015 5.985 20 C -0.059 4.059 21 C -0.238 4.238 22 C -0.129 4.129 23 C -0.086 4.086 24 C -0.155 4.155 25 C -0.078 4.078 26 C -0.162 4.162 27 C -0.120 4.120 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.187 0.813 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.154 0.846 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.691 9.013 3.767 9.793 hybrid contribution 0.543 -0.545 -1.169 1.399 sum -0.149 8.468 2.598 8.859 Atomic orbital electron populations 1.20662 0.91990 1.01893 1.01534 1.19778 0.95484 0.93458 1.04370 1.20860 0.93796 0.96894 1.00767 1.22360 0.94308 0.99644 1.02383 1.17965 0.82346 0.94383 0.98017 1.45913 1.04361 1.10356 1.63823 1.19903 0.91993 0.78762 0.98628 1.21227 1.36545 1.06667 0.91659 0.92280 1.24804 0.95194 0.95441 0.97741 1.69915 1.38502 1.10880 1.33554 0.86555 0.78933 0.77365 0.85049 1.20483 1.21010 1.19803 1.16776 0.83919 0.83137 0.77031 1.90500 1.66196 1.33938 1.50250 1.20841 0.91048 0.87306 1.10650 1.84916 1.15192 1.34214 1.64211 1.23502 0.86187 0.94546 1.01643 1.21167 0.96901 0.95765 1.09983 1.21034 0.92908 0.96768 1.02147 1.20450 0.97632 0.89636 1.00852 1.22364 0.94578 0.96831 1.01768 1.20334 0.95779 0.90341 1.01371 1.21055 0.94109 0.97461 1.03556 1.20720 0.93340 0.97148 1.00785 0.91979 0.92195 0.92247 0.86669 0.81313 0.92732 0.93276 0.92544 0.78273 0.90407 0.90371 0.91106 0.90683 0.91301 0.90858 0.84624 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.13 -2.05 5.88 -104.59 -0.62 -2.67 16 3 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 4 C -0.17 -3.31 8.96 -39.39 -0.35 -3.66 16 5 C 0.17 3.60 6.48 -83.72 -0.54 3.05 16 6 N -0.53 -11.98 2.68 -116.22 -0.31 -12.29 16 7 C 0.23 5.49 4.40 -5.19 -0.02 5.47 16 8 C -0.52 -13.69 7.99 -34.44 -0.28 -13.96 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 11 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 12 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.60 13.35 7.52 -12.88 -0.10 13.25 16 17 O -0.53 -11.63 13.39 5.18 0.07 -11.56 16 18 C -0.05 -0.96 6.66 -36.83 -0.25 -1.21 16 19 O -0.09 -2.00 6.47 4.87 0.03 -1.97 16 20 C 0.01 0.22 12.08 29.63 0.36 0.58 16 21 C -0.24 -3.81 6.93 -104.74 -0.73 -4.54 16 22 C -0.13 -2.27 6.66 -104.30 -0.69 -2.96 16 23 C -0.05 -0.70 6.76 -26.98 -0.18 -0.88 16 24 C -0.12 -1.32 7.06 -25.28 -0.18 -1.50 16 25 C -0.04 -0.49 6.76 -26.94 -0.18 -0.67 16 26 C -0.14 -2.80 9.28 -39.39 -0.37 -3.17 16 27 C -0.10 -1.71 9.69 -39.61 -0.38 -2.09 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.17 3.49 4.74 -55.09 -0.26 3.23 16 33 H 0.06 1.39 5.82 -51.93 -0.30 1.09 16 34 H 0.05 1.23 5.82 -51.93 -0.30 0.93 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.20 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.14 2.78 5.96 -52.48 -0.31 2.47 16 44 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -29.30 360.76 -9.48 -38.77 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.79 Total: 5.46 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -4.63 Total: -16.21 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.42 Total: -35.57 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.10 Total: -13.53 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.30 -9.48 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795789628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.189 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds