Wall clock time and date at job start Tue Mar 31 2020 14:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38291 * 119.92502 * 2 1 4 4 C 1.38107 * 120.07061 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.92870 * 359.96782 * 4 3 2 6 6 N 1.39829 * 120.07487 * 180.02562 * 5 4 3 7 7 C 1.46494 * 120.00259 * 187.79160 * 6 5 4 8 8 C 1.50705 * 109.47001 * 92.82713 * 7 6 5 9 9 H 1.08000 * 120.00211 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99693 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00310 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99642 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47282 * 90.00364 * 12 10 8 14 14 H 1.48498 * 109.46865 * 210.00057 * 12 10 8 15 15 H 1.48497 * 109.47196 * 329.99713 * 12 10 8 16 16 C 1.34785 * 119.99826 * 8.06629 * 6 5 4 17 17 O 1.21705 * 119.99663 * 6.09414 * 16 6 5 18 18 C 1.46613 * 119.99858 * 186.08964 * 16 6 5 19 19 O 1.34939 * 126.01219 * 5.79391 * 18 16 6 20 20 C 1.33952 * 109.38189 * 179.82495 * 19 18 16 21 21 C 1.35154 * 108.75505 * 0.43984 * 20 19 18 22 22 C 1.36494 * 126.00852 * 186.10336 * 18 16 6 23 23 C 1.51078 * 143.66666 * 0.02562 * 22 18 16 24 24 C 1.54375 * 105.24261 * 197.16083 * 23 22 18 25 25 C 1.51143 * 143.44641 * 179.72482 * 21 20 19 26 26 C 1.38894 * 119.85295 * 0.28344 * 5 4 3 27 27 C 1.38106 * 119.92727 * 359.44500 * 26 5 4 28 28 H 1.08995 * 109.47351 * 90.00509 * 1 2 3 29 29 H 1.08997 * 109.46903 * 210.00388 * 1 2 3 30 30 H 1.09001 * 109.47090 * 330.00213 * 1 2 3 31 31 H 1.07992 * 119.96539 * 359.97438 * 3 2 1 32 32 H 1.08008 * 120.03527 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47375 * 212.82780 * 7 6 5 34 34 H 1.08996 * 109.47313 * 332.82808 * 7 6 5 35 35 H 0.96999 * 120.00048 * 179.97438 * 11 10 8 36 36 H 1.07996 * 125.62766 * 180.20890 * 20 19 18 37 37 H 1.09004 * 110.28891 * 316.09609 * 23 22 18 38 38 H 1.09000 * 110.29338 * 78.12127 * 23 22 18 39 39 H 1.08999 * 110.76479 * 91.85116 * 24 23 22 40 40 H 1.09004 * 110.76553 * 215.04989 * 24 23 22 41 41 H 1.09003 * 110.28459 * 43.89114 * 25 21 20 42 42 H 1.08998 * 110.36729 * 281.83107 * 25 21 20 43 43 H 1.08008 * 120.03392 * 179.72269 * 26 5 4 44 44 H 1.08003 * 119.96178 * 180.27629 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0001 -0.0004 6 7 5.6722 0.0001 -0.0004 7 6 6.4047 -1.2569 -0.1722 8 6 6.7166 -1.4609 -1.6325 9 1 6.4011 -0.7274 -2.3597 10 6 7.4056 -2.5835 -2.0399 11 7 7.7903 -3.4765 -1.1543 12 14 7.7928 -2.8361 -3.8498 13 1 9.1062 -2.2194 -4.1658 14 1 7.8446 -4.2902 -4.1466 15 1 6.7355 -2.1997 -4.6757 16 6 6.3461 1.1558 0.1633 17 8 5.7427 2.1807 0.4214 18 6 7.8060 1.1783 0.0304 19 8 8.5833 0.1459 -0.3582 20 6 9.8655 0.5335 -0.3670 21 6 9.9319 1.8246 0.0273 22 6 8.6186 2.2453 0.2838 23 6 8.6285 3.6883 0.7311 24 6 10.0081 4.2355 0.3062 25 6 10.8869 2.9662 0.2903 26 6 3.5779 -1.2019 -0.0057 27 6 2.1969 -1.1984 0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1161 2.1385 -0.0010 33 1 7.3343 -1.2163 0.3956 34 1 5.7947 -2.0851 0.1882 35 1 8.2747 -4.2664 -1.4410 36 1 10.7077 -0.0848 -0.6401 37 1 7.8326 4.2435 0.2345 38 1 8.5129 3.7495 1.8132 39 1 9.9574 4.6831 -0.6863 40 1 10.3791 4.9562 1.0350 41 1 11.6283 3.0297 -0.5062 42 1 11.3788 2.8349 1.2540 43 1 4.1163 -2.1382 -0.0101 44 1 1.6552 -2.1328 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795789628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:02 Heat of formation + Delta-G solvation = 12.612002 kcal Electronic energy + Delta-G solvation = -27731.251975 eV Core-core repulsion = 24001.275969 eV Total energy + Delta-G solvation = -3729.976006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.78786 -41.63769 -39.43224 -38.24341 -37.06364 -34.74781 -32.99022 -31.86259 -31.50542 -31.20377 -29.44134 -28.40223 -26.98015 -25.46651 -24.26674 -23.35479 -22.89641 -21.77870 -21.12637 -20.07540 -18.80989 -18.29724 -18.13892 -17.37382 -17.19269 -16.55352 -16.40745 -16.07588 -15.79982 -15.66529 -15.12080 -14.85390 -14.66821 -14.52810 -14.37230 -14.32003 -13.91048 -13.61813 -13.40723 -13.22754 -12.97272 -12.93559 -12.74464 -12.65511 -12.52359 -12.37888 -12.22225 -12.04100 -11.98597 -11.93731 -11.87460 -10.86610 -10.66717 -10.55800 -10.14018 -9.82346 -9.55704 -8.68721 -8.20807 -6.34898 -0.11626 0.52608 0.60563 1.34815 1.37026 1.39107 1.46787 1.74139 2.06681 2.22580 2.39741 2.95884 3.07819 3.12836 3.53587 3.85524 3.99387 4.09302 4.16619 4.19209 4.22502 4.25433 4.43950 4.47268 4.55391 4.58803 4.81540 4.84274 4.87143 4.91349 4.93765 4.97299 5.07361 5.09780 5.15232 5.17853 5.23519 5.28288 5.36459 5.39569 5.51056 5.55668 5.63587 5.70351 5.78028 5.94848 6.07965 6.25017 6.30993 6.69395 6.95683 7.32535 8.84056 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.005496 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.122732 B = 5093.770636 C = 7629.459993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.182 4.182 5 C 0.131 3.869 6 N -0.536 5.536 7 C 0.246 3.754 8 C -0.526 4.526 9 H 0.037 0.963 10 C 0.035 3.965 11 N -0.914 5.914 12 Si 0.949 3.051 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.279 1.279 16 C 0.590 3.410 17 O -0.538 6.538 18 C -0.094 4.094 19 O -0.129 6.129 20 C 0.000 4.000 21 C -0.230 4.230 22 C -0.126 4.126 23 C -0.054 4.054 24 C -0.107 4.107 25 C -0.039 4.039 26 C -0.160 4.160 27 C -0.100 4.100 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.269 0.731 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 10.339 3.357 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.202 4.202 5 C 0.036 3.964 6 N -0.254 5.254 7 C 0.127 3.873 8 C -0.564 4.564 9 H 0.056 0.944 10 C -0.166 4.166 11 N -0.553 5.553 12 Si 0.775 3.225 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.205 1.205 16 C 0.383 3.617 17 O -0.421 6.421 18 C -0.146 4.146 19 O -0.022 6.022 20 C -0.071 4.071 21 C -0.231 4.231 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.144 4.144 25 C -0.076 4.076 26 C -0.180 4.180 27 C -0.118 4.118 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.836 10.366 3.442 10.954 hybrid contribution 0.524 -0.921 -1.020 1.471 sum -0.312 9.444 2.422 9.755 Atomic orbital electron populations 1.20745 0.88359 1.03714 1.02973 1.20276 0.97957 0.92313 1.01431 1.21230 0.92567 0.98904 0.99365 1.22338 0.95803 0.98451 1.03603 1.18332 0.81916 0.95708 1.00412 1.45855 1.05160 1.09840 1.64544 1.19457 0.91137 0.79302 0.97442 1.21189 1.36837 1.06396 0.92013 0.94438 1.25421 0.94844 0.95018 1.01321 1.69994 1.38901 1.11239 1.35131 0.85691 0.78733 0.77604 0.80498 1.19483 1.19975 1.20466 1.17075 0.84802 0.82958 0.76893 1.90465 1.66734 1.33850 1.51073 1.20902 0.90867 0.88733 1.14132 1.84831 1.16820 1.35246 1.65348 1.24229 0.85540 0.95931 1.01375 1.21742 0.97256 0.95935 1.08174 1.21684 0.93352 0.97862 1.00008 1.20685 0.99819 0.87297 1.01333 1.22404 0.91877 0.97017 1.03107 1.20533 0.95412 0.88430 1.03216 1.21075 0.95630 0.96212 1.05128 1.21086 0.92073 0.99168 0.99487 0.90521 0.90524 0.90418 0.83563 0.82676 0.94326 0.94743 0.92177 0.75544 0.91208 0.89416 0.90512 0.87280 0.89107 0.88836 0.86495 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 10.01 71.23 0.71 -1.29 16 2 C -0.12 -3.51 5.88 -19.84 -0.12 -3.63 16 3 C -0.10 -3.33 9.69 22.25 0.22 -3.12 16 4 C -0.18 -7.49 8.96 22.40 0.20 -7.29 16 5 C 0.13 5.94 6.48 38.18 0.25 6.19 16 6 N -0.54 -26.37 2.68 -639.81 -1.72 -28.09 16 7 C 0.25 12.94 4.40 85.64 0.38 13.32 16 8 C -0.53 -29.14 7.99 25.60 0.20 -28.94 16 9 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 10 C 0.03 1.88 5.46 84.65 0.46 2.34 16 11 N -0.91 -50.74 13.29 21.45 0.28 -50.45 16 12 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 C 0.59 28.30 7.52 86.43 0.65 28.95 16 17 O -0.54 -25.38 13.39 -4.36 -0.06 -25.44 16 18 C -0.09 -4.23 6.66 24.05 0.16 -4.07 16 19 O -0.13 -5.85 6.47 -5.49 -0.04 -5.89 16 20 C 0.00 -0.01 12.08 67.11 0.81 0.80 16 21 C -0.23 -7.22 6.93 -19.94 -0.14 -7.36 16 22 C -0.13 -4.63 6.66 -19.66 -0.13 -4.76 16 23 C -0.05 -1.51 6.76 30.43 0.21 -1.31 16 24 C -0.11 -2.05 7.06 31.53 0.22 -1.83 16 25 C -0.04 -0.81 6.76 30.46 0.21 -0.60 16 26 C -0.16 -6.67 9.28 22.40 0.21 -6.46 16 27 C -0.10 -3.30 9.69 22.25 0.22 -3.08 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.16 6.78 4.74 -44.21 -0.21 6.57 16 33 H 0.04 2.15 5.82 -2.39 -0.01 2.14 16 34 H 0.03 1.88 5.82 -2.39 -0.01 1.87 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.23 6.25 8.06 -2.91 -0.02 6.22 16 37 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.12 5.20 5.96 -2.91 -0.02 5.18 16 44 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -68.20 360.76 6.04 -62.16 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.83 Total: 24.73 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.71 Total: -22.14 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.43 Total: -78.54 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.09 Total: -31.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.20 6.04 -62.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795789628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.775 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds