Wall clock time and date at job start Tue Mar 31 2020 13:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99553 * 2 1 4 4 H 1.48493 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47137 * 299.99840 * 3 2 1 6 6 H 1.48501 * 109.47433 * 59.99978 * 3 2 1 7 7 C 1.38942 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99717 * 159.27437 * 7 2 1 9 9 N 1.37097 * 120.00263 * 339.27287 * 7 2 1 10 10 C 1.46498 * 119.99831 * 322.49780 * 9 7 2 11 11 C 1.50698 * 109.47578 * 264.44604 * 10 9 7 12 12 C 1.38231 * 119.99894 * 84.73132 * 11 10 9 13 13 C 1.38238 * 119.99808 * 179.97438 * 12 11 10 14 14 C 1.38238 * 119.99979 * 359.97438 * 13 12 11 15 15 C 1.38232 * 120.00012 * 0.27616 * 14 13 12 16 16 C 1.38233 * 119.99772 * 264.71477 * 11 10 9 17 17 C 1.34777 * 119.99911 * 142.50343 * 9 7 2 18 18 O 1.21293 * 119.99726 * 180.02562 * 17 9 7 19 19 C 1.50699 * 120.00190 * 359.97438 * 17 9 7 20 20 O 1.42903 * 109.47244 * 180.02562 * 19 17 9 21 21 C 1.42898 * 114.00007 * 180.02562 * 20 19 17 22 22 C 1.50693 * 109.46881 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.00278 * 269.72304 * 22 21 20 24 24 C 1.38227 * 120.00562 * 179.76720 * 23 22 21 25 25 C 1.38243 * 119.99809 * 0.51218 * 24 23 22 26 26 C 1.38232 * 119.99777 * 359.74303 * 25 24 23 27 27 C 1.38231 * 119.99945 * 0.02562 * 26 25 24 28 28 H 0.96996 * 120.00330 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.46510 * 144.44284 * 10 9 7 30 30 H 1.09004 * 109.47192 * 24.44904 * 10 9 7 31 31 H 1.07999 * 120.00069 * 359.97438 * 12 11 10 32 32 H 1.07995 * 119.99984 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.99889 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.99934 * 179.72528 * 15 14 13 35 35 H 1.07996 * 120.00568 * 359.97438 * 16 11 10 36 36 H 1.09000 * 109.47377 * 300.00514 * 19 17 9 37 37 H 1.09003 * 109.46889 * 60.00655 * 19 17 9 38 38 H 1.08999 * 109.47003 * 300.00068 * 21 20 19 39 39 H 1.09004 * 109.47216 * 59.99877 * 21 20 19 40 40 H 1.08005 * 119.99619 * 0.02562 * 23 22 21 41 41 H 1.08003 * 120.00697 * 180.23302 * 24 23 22 42 42 H 1.07993 * 120.00024 * 179.72583 * 25 24 23 43 43 H 1.08004 * 119.99984 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.99992 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2126 6 1 1.8893 2.3966 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0365 -1.2336 -0.3305 9 7 1.3900 -2.3520 0.4212 10 6 0.4527 -2.3091 1.5462 11 6 1.1756 -2.6752 2.8168 12 6 1.8674 -1.7080 3.5216 13 6 2.5301 -2.0437 4.6874 14 6 2.5005 -3.3465 5.1487 15 6 1.8130 -4.3147 4.4411 16 6 1.1465 -3.9781 3.2777 17 6 1.6442 -3.5207 -0.2001 18 8 1.0963 -4.5369 0.1718 19 6 2.6081 -3.5647 -1.3576 20 8 2.7081 -4.9048 -1.8436 21 6 3.6026 -5.0575 -2.9475 22 6 3.6294 -6.5019 -3.3761 23 6 4.5470 -7.3718 -2.8175 24 6 4.5685 -8.6979 -3.2071 25 6 3.6792 -9.1518 -4.1632 26 6 2.7650 -8.2808 -4.7257 27 6 2.7405 -6.9558 -4.3326 28 1 -0.4850 0.8400 0.0004 29 1 -0.3570 -3.0179 1.3717 30 1 0.0417 -1.3038 1.6387 31 1 1.8902 -0.6901 3.1614 32 1 3.0703 -1.2880 5.2382 33 1 3.0179 -3.6086 6.0597 34 1 1.7935 -5.3335 4.7992 35 1 0.6055 -4.7336 2.7275 36 1 2.2478 -2.9152 -2.1554 37 1 3.5891 -3.2237 -1.0267 38 1 3.2635 -4.4386 -3.7782 39 1 4.6042 -4.7480 -2.6491 40 1 5.2446 -7.0163 -2.0735 41 1 5.2830 -9.3784 -2.7679 42 1 3.6988 -10.1868 -4.4709 43 1 2.0705 -8.6353 -5.4730 44 1 2.0264 -6.2751 -4.7724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143210971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:08 Heat of formation + Delta-G solvation = -22.892124 kcal Electronic energy + Delta-G solvation = -26518.712492 eV Core-core repulsion = 22787.196911 eV Total energy + Delta-G solvation = -3731.515581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.34241 -39.04302 -38.07322 -36.74548 -34.78616 -32.00089 -31.84853 -30.87465 -30.85152 -30.26103 -27.71563 -25.89476 -25.27439 -23.97305 -22.55002 -21.90098 -21.25056 -20.74123 -19.20299 -17.33949 -16.92065 -16.31035 -16.04897 -15.82452 -15.44042 -15.15456 -14.84439 -14.51815 -14.49816 -14.28592 -14.12740 -13.54683 -13.42218 -13.27315 -12.79358 -12.66143 -12.57299 -12.33781 -12.06122 -11.69428 -11.49528 -11.36396 -11.35789 -10.99132 -10.96083 -10.85113 -10.73119 -10.44690 -10.36794 -10.14425 -9.24631 -9.19785 -8.88713 -8.81984 -8.50005 -8.30731 -8.05044 -7.61127 -6.48973 -4.18331 1.30763 1.43497 1.95213 2.02110 3.02883 3.15468 3.18432 3.60573 3.84501 3.99340 4.18898 4.43396 4.85802 4.86044 4.87454 5.00514 5.11925 5.34992 5.35740 5.44121 5.48094 5.49563 5.59463 5.61472 5.68245 5.86817 5.92566 5.99881 6.06134 6.09361 6.13051 6.19339 6.24366 6.46198 6.48200 6.50175 6.63117 6.67084 6.77430 7.00816 7.05099 7.07222 7.14101 7.31579 7.44662 7.58697 7.64122 7.83701 8.26559 8.98054 9.42419 9.86179 10.53590 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003480 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.534978 B = 8043.640792 C = 9757.443340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.047 3.953 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.344 4.344 8 H 0.088 0.912 9 N -0.433 5.433 10 C 0.154 3.846 11 C -0.081 4.081 12 C -0.098 4.098 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.099 4.099 17 C 0.479 3.521 18 O -0.580 6.580 19 C 0.063 3.937 20 O -0.361 6.361 21 C 0.099 3.901 22 C -0.080 4.080 23 C -0.098 4.098 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.098 4.098 28 H 0.271 0.729 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 -7.415 -2.545 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.471 4.471 8 H 0.106 0.894 9 N -0.153 5.153 10 C 0.031 3.969 11 C -0.083 4.083 12 C -0.116 4.116 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.118 4.118 17 C 0.267 3.733 18 O -0.464 6.464 19 C -0.016 4.016 20 O -0.279 6.279 21 C 0.022 3.978 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.116 4.116 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.498 -7.914 -2.299 10.495 hybrid contribution 0.665 1.236 -0.096 1.407 sum 7.164 -6.677 -2.395 10.082 Atomic orbital electron populations 1.69952 1.06231 1.27932 1.44880 1.25344 0.95044 0.99808 0.95751 0.86165 0.80212 0.81940 0.78210 1.19069 1.20596 1.20284 1.19430 0.96307 0.85268 1.46122 0.89418 1.43265 1.40259 1.06102 1.25715 1.20336 0.90789 1.04108 0.81675 1.20645 0.97826 0.93161 0.96646 1.21109 0.96515 0.99750 0.94254 1.21044 1.00702 0.96228 0.97199 1.20969 1.00756 0.93628 0.99922 1.21057 0.99075 0.98738 0.96192 1.21271 0.98806 0.96341 0.95376 1.19991 0.84807 0.84497 0.84038 1.90541 1.54029 1.34403 1.67400 1.22088 0.99202 0.83313 0.96980 1.88057 1.64142 1.27567 1.48161 1.21297 0.93984 0.92485 0.90064 1.19669 0.96393 0.95210 0.96746 1.21092 0.98604 0.93353 0.98611 1.21117 0.99544 0.95641 0.98079 1.21145 0.95999 0.99467 0.97223 1.21123 0.99098 0.93609 1.00514 1.21110 0.97530 0.95947 0.96998 0.91864 0.91900 0.87050 0.86146 0.86940 0.87140 0.86973 0.85779 0.90652 0.91739 0.92572 0.92727 0.85944 0.86103 0.86267 0.86069 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.47 11.50 55.50 0.64 -20.83 16 2 C 0.05 1.13 4.92 -17.47 -0.09 1.04 16 3 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.34 -8.29 8.61 -14.94 -0.13 -8.42 16 8 H 0.09 2.03 7.08 -52.49 -0.37 1.66 16 9 N -0.43 -10.66 2.52 -116.09 -0.29 -10.95 16 10 C 0.15 3.64 5.01 -5.20 -0.03 3.61 16 11 C -0.08 -1.74 5.41 -104.63 -0.57 -2.30 16 12 C -0.10 -1.91 9.72 -39.58 -0.38 -2.30 16 13 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 14 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 15 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 16 C -0.10 -2.01 9.41 -39.58 -0.37 -2.38 16 17 C 0.48 11.86 7.66 -10.99 -0.08 11.77 16 18 O -0.58 -15.75 15.46 -14.36 -0.22 -15.97 16 19 C 0.06 1.31 5.11 36.01 0.18 1.50 16 20 O -0.36 -7.35 9.86 -55.14 -0.54 -7.89 16 21 C 0.10 1.51 6.06 36.00 0.22 1.73 16 22 C -0.08 -1.17 5.51 -104.63 -0.58 -1.75 16 23 C -0.10 -1.31 9.70 -39.59 -0.38 -1.70 16 24 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 26 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 27 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 28 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 29 H 0.06 1.54 7.50 -51.92 -0.39 1.15 16 30 H 0.11 2.74 5.55 -51.93 -0.29 2.45 16 31 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.12 2.62 7.62 -52.49 -0.40 2.22 16 36 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 37 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 38 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -29.84 377.89 -10.78 -40.62 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.05 Total: 10.19 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -4.98 Total: -14.24 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.35 Total: -31.78 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.77 Total: -23.86 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.84 -10.78 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143210971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.732 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds