Wall clock time and date at job start Tue Mar 31 2020 13:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99553 * 2 1 4 4 H 1.48493 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47137 * 299.99840 * 3 2 1 6 6 H 1.48501 * 109.47433 * 59.99978 * 3 2 1 7 7 C 1.38942 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99717 * 159.27437 * 7 2 1 9 9 N 1.37097 * 120.00263 * 339.27287 * 7 2 1 10 10 C 1.46498 * 119.99831 * 322.49780 * 9 7 2 11 11 C 1.50698 * 109.47578 * 264.44604 * 10 9 7 12 12 C 1.38231 * 119.99894 * 84.73132 * 11 10 9 13 13 C 1.38238 * 119.99808 * 179.97438 * 12 11 10 14 14 C 1.38238 * 119.99979 * 359.97438 * 13 12 11 15 15 C 1.38232 * 120.00012 * 0.27616 * 14 13 12 16 16 C 1.38233 * 119.99772 * 264.71477 * 11 10 9 17 17 C 1.34777 * 119.99911 * 142.50343 * 9 7 2 18 18 O 1.21293 * 119.99726 * 180.02562 * 17 9 7 19 19 C 1.50699 * 120.00190 * 359.97438 * 17 9 7 20 20 O 1.42903 * 109.47244 * 180.02562 * 19 17 9 21 21 C 1.42898 * 114.00007 * 180.02562 * 20 19 17 22 22 C 1.50693 * 109.46881 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.00278 * 269.72304 * 22 21 20 24 24 C 1.38227 * 120.00562 * 179.76720 * 23 22 21 25 25 C 1.38243 * 119.99809 * 0.51218 * 24 23 22 26 26 C 1.38232 * 119.99777 * 359.74303 * 25 24 23 27 27 C 1.38231 * 119.99945 * 0.02562 * 26 25 24 28 28 H 0.96996 * 120.00330 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.46510 * 144.44284 * 10 9 7 30 30 H 1.09004 * 109.47192 * 24.44904 * 10 9 7 31 31 H 1.07999 * 120.00069 * 359.97438 * 12 11 10 32 32 H 1.07995 * 119.99984 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.99889 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.99934 * 179.72528 * 15 14 13 35 35 H 1.07996 * 120.00568 * 359.97438 * 16 11 10 36 36 H 1.09000 * 109.47377 * 300.00514 * 19 17 9 37 37 H 1.09003 * 109.46889 * 60.00655 * 19 17 9 38 38 H 1.08999 * 109.47003 * 300.00068 * 21 20 19 39 39 H 1.09004 * 109.47216 * 59.99877 * 21 20 19 40 40 H 1.08005 * 119.99619 * 0.02562 * 23 22 21 41 41 H 1.08003 * 120.00697 * 180.23302 * 24 23 22 42 42 H 1.07993 * 120.00024 * 179.72583 * 25 24 23 43 43 H 1.08004 * 119.99984 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.99992 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2126 6 1 1.8893 2.3966 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0365 -1.2336 -0.3305 9 7 1.3900 -2.3520 0.4212 10 6 0.4527 -2.3091 1.5462 11 6 1.1756 -2.6752 2.8168 12 6 1.8674 -1.7080 3.5216 13 6 2.5301 -2.0437 4.6874 14 6 2.5005 -3.3465 5.1487 15 6 1.8130 -4.3147 4.4411 16 6 1.1465 -3.9781 3.2777 17 6 1.6442 -3.5207 -0.2001 18 8 1.0963 -4.5369 0.1718 19 6 2.6081 -3.5647 -1.3576 20 8 2.7081 -4.9048 -1.8436 21 6 3.6026 -5.0575 -2.9475 22 6 3.6294 -6.5019 -3.3761 23 6 4.5470 -7.3718 -2.8175 24 6 4.5685 -8.6979 -3.2071 25 6 3.6792 -9.1518 -4.1632 26 6 2.7650 -8.2808 -4.7257 27 6 2.7405 -6.9558 -4.3326 28 1 -0.4850 0.8400 0.0004 29 1 -0.3570 -3.0179 1.3717 30 1 0.0417 -1.3038 1.6387 31 1 1.8902 -0.6901 3.1614 32 1 3.0703 -1.2880 5.2382 33 1 3.0179 -3.6086 6.0597 34 1 1.7935 -5.3335 4.7992 35 1 0.6055 -4.7336 2.7275 36 1 2.2478 -2.9152 -2.1554 37 1 3.5891 -3.2237 -1.0267 38 1 3.2635 -4.4386 -3.7782 39 1 4.6042 -4.7480 -2.6491 40 1 5.2446 -7.0163 -2.0735 41 1 5.2830 -9.3784 -2.7679 42 1 3.6988 -10.1868 -4.4709 43 1 2.0705 -8.6353 -5.4730 44 1 2.0264 -6.2751 -4.7724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143210971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:08 Heat of formation + Delta-G solvation = -36.057501 kcal Electronic energy + Delta-G solvation = -26519.283386 eV Core-core repulsion = 22787.196911 eV Total energy + Delta-G solvation = -3732.086474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88683 -40.25384 -39.60748 -38.23362 -36.68104 -33.74437 -33.04738 -32.45604 -31.80347 -31.70088 -29.27007 -27.50186 -26.75796 -25.65829 -23.48685 -23.35128 -22.29692 -22.24195 -21.06792 -19.04937 -18.30442 -17.61919 -17.49043 -17.24521 -17.07312 -16.46121 -16.29763 -16.07118 -15.93611 -15.75852 -15.64355 -15.00215 -14.82160 -14.28602 -14.21631 -14.05668 -13.84498 -13.67533 -13.56843 -13.20804 -13.12174 -12.95909 -12.88116 -12.64789 -12.53364 -12.03471 -11.93504 -11.90523 -11.85669 -11.74442 -11.09577 -10.66897 -10.41173 -9.83226 -9.77006 -9.75286 -9.58564 -9.51659 -8.33992 -6.10492 0.31976 0.49031 0.49730 0.57034 1.40533 1.49270 1.61132 1.96239 2.22295 2.42869 2.84455 3.01807 3.08150 3.50512 3.89656 3.96331 4.03625 4.11430 4.14003 4.20117 4.23354 4.28989 4.30312 4.35979 4.39747 4.42957 4.49059 4.58590 4.65310 4.73298 4.75448 4.86684 5.05923 5.13405 5.14515 5.21897 5.26149 5.43794 5.53494 5.58537 5.63935 5.65119 5.67508 5.86180 5.98446 6.08242 6.14310 6.20680 6.39400 7.09316 7.52619 7.97283 8.70108 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003480 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.534978 B = 8043.640792 C = 9757.443340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.437 5.437 10 C 0.160 3.840 11 C -0.105 4.105 12 C -0.112 4.112 13 C -0.125 4.125 14 C -0.121 4.121 15 C -0.130 4.130 16 C -0.121 4.121 17 C 0.457 3.543 18 O -0.617 6.617 19 C 0.077 3.923 20 O -0.389 6.389 21 C 0.094 3.906 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.117 4.117 28 H 0.274 0.726 29 H 0.034 0.966 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -7.682 -1.586 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.192 4.192 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.486 4.486 8 H 0.116 0.884 9 N -0.156 5.156 10 C 0.037 3.963 11 C -0.106 4.106 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.140 4.140 17 C 0.246 3.754 18 O -0.504 6.504 19 C -0.002 4.002 20 O -0.309 6.309 21 C 0.019 3.981 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.082 -8.175 -1.347 12.293 hybrid contribution -0.162 1.224 -0.384 1.293 sum 8.920 -6.951 -1.731 11.440 Atomic orbital electron populations 1.70056 1.07881 1.28937 1.45606 1.26161 0.95586 1.02736 0.94752 0.85117 0.79360 0.77461 0.77970 1.17884 1.20553 1.20058 1.19763 0.96802 0.85341 1.46674 0.88407 1.43506 1.39798 1.06458 1.25833 1.20146 0.90591 1.02264 0.83284 1.20443 0.99491 0.94408 0.96279 1.21130 0.97406 0.98942 0.95624 1.21435 0.99387 0.97667 0.95834 1.21453 0.99211 0.92626 1.00647 1.21381 0.97907 1.00677 0.94792 1.21186 1.00317 0.95430 0.97020 1.20783 0.85496 0.84132 0.84960 1.90497 1.55680 1.35511 1.68669 1.21878 0.98763 0.84047 0.95513 1.88018 1.65780 1.27073 1.50016 1.21538 0.93869 0.93801 0.88939 1.19776 0.97877 0.95061 0.98074 1.21308 0.98754 0.94265 0.99006 1.21483 1.00016 0.95253 0.97952 1.21576 0.94925 1.00877 0.96276 1.21471 0.99596 0.92912 1.00809 1.21311 0.97703 0.97166 0.97368 0.91614 0.94758 0.88462 0.86923 0.83363 0.82704 0.84216 0.88193 0.90209 0.90043 0.91435 0.91080 0.85478 0.83503 0.83116 0.83671 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.04 11.50 21.66 0.25 -45.79 16 2 C 0.01 0.56 4.92 84.92 0.42 0.98 16 3 Si 0.98 37.50 29.60 68.60 2.03 39.53 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.28 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.36 -17.64 8.61 84.04 0.72 -16.92 16 8 H 0.10 4.52 7.08 -2.91 -0.02 4.50 16 9 N -0.44 -22.51 2.52 -639.60 -1.61 -24.12 16 10 C 0.16 8.11 5.01 85.63 0.43 8.54 16 11 C -0.11 -4.66 5.41 -19.87 -0.11 -4.77 16 12 C -0.11 -4.38 9.72 22.27 0.22 -4.17 16 13 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 14 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 15 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 16 C -0.12 -5.04 9.41 22.27 0.21 -4.83 16 17 C 0.46 23.80 7.66 87.66 0.67 24.47 16 18 O -0.62 -35.67 15.46 15.97 0.25 -35.43 16 19 C 0.08 3.29 5.11 71.24 0.36 3.66 16 20 O -0.39 -16.39 9.86 -129.95 -1.28 -17.67 16 21 C 0.09 2.94 6.06 71.23 0.43 3.37 16 22 C -0.11 -3.18 5.51 -19.87 -0.11 -3.29 16 23 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 25 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 26 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 28 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 29 H 0.03 1.85 7.50 -2.38 -0.02 1.83 16 30 H 0.10 5.12 5.55 -2.39 -0.01 5.10 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 34 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.10 4.56 7.62 -2.91 -0.02 4.54 16 36 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 37 H 0.08 3.14 7.66 -2.39 -0.02 3.12 16 38 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.07 1.92 8.08 -2.38 -0.02 1.90 16 40 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -68.16 377.89 5.64 -62.52 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.99 Total: 37.93 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 5.02 Total: -16.97 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -1.36 Total: -69.91 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -1.03 Total: -53.10 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -68.16 5.64 -62.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143210971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.461 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds