Wall clock time and date at job start Tue Mar 31 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 119.99879 * 2 1 4 4 C 1.38218 * 119.99904 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99935 * 359.81143 * 5 4 3 7 7 C 1.38207 * 119.99773 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00534 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.46789 * 322.06891 * 8 7 2 10 10 O 1.42894 * 109.47334 * 202.06524 * 8 7 2 11 11 C 1.50704 * 109.46854 * 82.06402 * 8 7 2 12 12 O 1.21287 * 119.99853 * 64.29716 * 11 8 7 13 13 N 1.34774 * 119.99697 * 244.29234 * 11 8 7 14 14 C 1.37101 * 120.00564 * 355.22200 * 13 11 8 15 15 H 1.08000 * 119.99913 * 316.15118 * 14 13 11 16 16 C 1.38946 * 119.99849 * 136.14423 * 14 13 11 17 17 N 1.31416 * 119.99665 * 166.45707 * 16 14 13 18 18 Si 1.86802 * 120.00389 * 346.46820 * 16 14 13 19 19 H 1.48495 * 109.47230 * 90.25959 * 18 16 14 20 20 H 1.48494 * 109.46900 * 210.26132 * 18 16 14 21 21 H 1.48504 * 109.46626 * 330.25690 * 18 16 14 22 22 C 1.46503 * 119.99637 * 175.22149 * 13 11 8 23 23 C 1.50708 * 109.46955 * 90.00331 * 22 13 11 24 24 C 1.38235 * 119.99619 * 269.72708 * 23 22 13 25 25 C 1.38233 * 119.99846 * 179.76776 * 24 23 22 26 26 C 1.38239 * 119.99910 * 0.48140 * 25 24 23 27 27 C 1.38236 * 119.99839 * 359.79271 * 26 25 24 28 28 C 1.38228 * 119.99934 * 89.99874 * 23 22 13 29 29 H 1.08997 * 109.47071 * 274.78921 * 1 2 3 30 30 H 1.09002 * 109.47600 * 34.78576 * 1 2 3 31 31 H 1.08999 * 109.47321 * 154.79193 * 1 2 3 32 32 H 1.07993 * 120.00104 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.99795 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.99903 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.99831 * 180.23080 * 6 5 4 36 36 H 0.96702 * 114.00136 * 299.99773 * 10 8 7 37 37 H 0.96998 * 120.00056 * 185.01080 * 17 16 14 38 38 H 1.09001 * 109.47374 * 209.99761 * 22 13 11 39 39 H 1.08998 * 109.47444 * 330.00131 * 22 13 11 40 40 H 1.07997 * 120.00242 * 359.97438 * 24 23 22 41 41 H 1.08002 * 120.00457 * 180.25216 * 25 24 23 42 42 H 1.08005 * 120.00163 * 179.76827 * 26 25 24 43 43 H 1.08001 * 119.99907 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00616 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0039 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5612 -2.4116 0.6315 10 8 2.2879 -3.5390 0.5050 11 6 1.0230 -2.8387 -1.4077 12 8 1.8617 -3.0603 -2.2554 13 7 -0.2860 -2.8936 -1.7241 14 6 -1.2347 -2.7402 -0.7463 15 1 -1.1193 -3.2444 0.2018 16 6 -2.3445 -1.9361 -0.9751 17 7 -3.3758 -1.9931 -0.1627 18 14 -2.3707 -0.7744 -2.4377 19 1 -2.9504 -1.4719 -3.6135 20 1 -3.1975 0.4148 -2.1104 21 1 -0.9849 -0.3427 -2.7517 22 6 -0.6950 -3.1171 -3.1130 23 6 -0.8308 -4.5968 -3.3647 24 6 0.2550 -5.3235 -3.8162 25 6 0.1318 -6.6816 -4.0425 26 6 -1.0798 -7.3112 -3.8268 27 6 -2.1671 -6.5833 -3.3807 28 6 -2.0425 -5.2262 -3.1495 29 1 -0.3633 0.0858 1.0240 30 1 -0.3634 0.8440 -0.5863 31 1 -0.3634 -0.9298 -0.4377 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0000 0.0014 35 1 4.1206 -2.1322 0.0077 36 1 3.0950 -3.6755 -0.0098 37 1 -4.1788 -1.4868 -0.3620 38 1 -1.6528 -2.6287 -3.2928 39 1 0.0564 -2.7018 -3.7845 40 1 1.2004 -4.8309 -3.9889 41 1 0.9812 -7.2502 -4.3914 42 1 -1.1771 -8.3716 -4.0072 43 1 -3.1139 -7.0751 -3.2126 44 1 -2.8921 -4.6576 -2.8013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144527950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:47 Heat of formation + Delta-G solvation = -15.541020 kcal Electronic energy + Delta-G solvation = -28436.329777 eV Core-core repulsion = 24705.132964 eV Total energy + Delta-G solvation = -3731.196813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.12878 -38.95461 -38.02858 -36.08534 -35.06740 -32.74893 -32.26467 -31.12799 -30.73044 -30.38619 -27.30480 -26.56874 -25.34646 -24.61896 -22.02970 -21.73372 -21.12723 -20.56141 -19.44084 -17.78616 -17.18350 -16.56712 -16.11746 -15.87856 -15.11160 -14.93415 -14.80309 -14.58715 -14.41832 -13.91425 -13.86798 -13.27856 -13.15766 -12.95164 -12.85389 -12.77764 -12.63304 -12.33700 -12.10988 -11.79821 -11.74234 -11.66083 -11.44510 -11.12751 -10.94961 -10.74103 -10.63704 -10.50877 -10.25038 -10.08145 -10.05546 -9.31251 -8.90064 -8.46075 -8.41872 -8.29144 -8.02573 -7.94314 -6.63765 -4.36565 1.63397 1.72555 1.80657 1.90833 2.88707 3.06318 3.12144 3.42334 3.89176 3.96631 4.14780 4.49844 4.69111 4.98175 5.14639 5.18724 5.27686 5.32629 5.33133 5.37550 5.45439 5.65567 5.71776 5.75050 5.81801 5.83661 6.02064 6.09600 6.11633 6.13204 6.23091 6.28025 6.36747 6.45089 6.47951 6.56810 6.76786 6.78394 6.93114 6.94613 6.95466 7.12123 7.18798 7.22598 7.36250 7.50042 7.87155 7.94960 8.05358 8.70636 9.06779 9.42955 10.42216 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.005532 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.421825 B = 5060.188138 C = 6395.915400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.100 4.100 8 C 0.136 3.864 9 H 0.144 0.856 10 O -0.543 6.543 11 C 0.471 3.529 12 O -0.584 6.584 13 N -0.453 5.453 14 C -0.350 4.350 15 H 0.108 0.892 16 C 0.077 3.923 17 N -0.850 5.850 18 Si 0.864 3.136 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.254 1.254 22 C 0.131 3.869 23 C -0.083 4.083 24 C -0.099 4.099 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.091 4.091 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.372 0.628 37 H 0.279 0.721 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 0.420 -2.755 6.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.116 4.116 7 C -0.101 4.101 8 C 0.075 3.925 9 H 0.162 0.838 10 O -0.348 6.348 11 C 0.260 3.740 12 O -0.468 6.468 13 N -0.174 5.174 14 C -0.476 4.476 15 H 0.126 0.874 16 C -0.133 4.133 17 N -0.483 5.483 18 Si 0.692 3.308 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.178 1.178 22 C 0.009 3.991 23 C -0.084 4.084 24 C -0.118 4.118 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.110 4.110 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.221 0.779 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.678 0.402 -2.613 6.263 hybrid contribution 0.099 0.723 -1.060 1.287 sum 5.777 1.125 -3.673 6.938 Atomic orbital electron populations 1.21731 0.90192 1.07061 1.03039 1.19906 0.96897 0.92082 0.96884 1.21016 0.94168 0.97439 1.02089 1.21049 0.94281 0.97718 1.00911 1.20963 0.99359 0.92457 1.02398 1.20808 0.93446 0.98086 0.99254 1.20153 0.94027 0.94771 1.01128 1.20888 0.93601 0.83602 0.94452 0.83850 1.86626 1.36565 1.55949 1.55649 1.21054 0.82893 0.79778 0.90320 1.90530 1.51532 1.54104 1.50622 1.43755 1.04679 1.62675 1.06327 1.19013 1.02257 1.29019 0.97331 0.87417 1.25439 0.95356 0.95761 0.96698 1.69628 1.03131 1.39343 1.36226 0.87213 0.79916 0.81276 0.82443 1.19801 1.20901 1.17774 1.20730 1.00491 0.91681 0.86199 1.20214 0.93597 0.96644 0.97993 1.21196 0.98543 0.93932 0.98100 1.21040 0.97322 0.94819 1.01818 1.21028 0.93490 0.99191 1.00972 1.21063 0.98529 0.94358 1.00766 1.21135 0.97703 0.94545 0.97625 0.90958 0.92809 0.85326 0.86360 0.86578 0.86452 0.86227 0.77950 0.90980 0.90709 0.90463 0.85680 0.86787 0.86887 0.86596 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.35 36.00 0.30 -2.89 16 2 C -0.06 -1.07 5.88 -104.63 -0.62 -1.68 16 3 C -0.13 -2.07 9.72 -39.58 -0.38 -2.46 16 4 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 5 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 6 C -0.10 -1.62 9.30 -39.58 -0.37 -1.99 16 7 C -0.10 -1.89 5.02 -104.62 -0.53 -2.42 16 8 C 0.14 2.78 2.81 -29.03 -0.08 2.69 16 9 H 0.14 3.09 5.10 -51.93 -0.26 2.83 16 10 O -0.54 -10.36 12.91 -44.04 -0.57 -10.93 16 11 C 0.47 10.54 6.23 -10.98 -0.07 10.48 16 12 O -0.58 -13.66 15.72 -3.26 -0.05 -13.71 16 13 N -0.45 -10.25 1.88 -116.09 -0.22 -10.47 16 14 C -0.35 -8.30 6.58 -14.93 -0.10 -8.40 16 15 H 0.11 2.77 7.20 -52.49 -0.38 2.40 16 16 C 0.08 1.83 4.71 -17.47 -0.08 1.75 16 17 N -0.85 -21.25 13.95 55.50 0.77 -20.48 16 18 Si 0.86 18.87 22.74 -169.99 -3.86 15.00 16 19 H -0.27 -5.74 6.59 56.52 0.37 -5.37 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.25 -5.61 7.11 56.52 0.40 -5.21 16 22 C 0.13 2.81 4.22 -5.19 -0.02 2.79 16 23 C -0.08 -1.67 5.46 -104.62 -0.57 -2.24 16 24 C -0.10 -1.85 9.58 -39.58 -0.38 -2.23 16 25 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 26 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 27 C -0.13 -2.12 10.05 -39.58 -0.40 -2.51 16 28 C -0.09 -1.74 9.70 -39.58 -0.38 -2.12 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.99 7.78 -51.93 -0.40 0.58 16 31 H 0.13 2.75 1.04 -51.93 -0.05 2.70 16 32 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.75 6.37 -52.49 -0.33 1.42 16 36 H 0.37 6.07 7.20 45.56 0.33 6.40 16 37 H 0.28 6.58 8.32 -40.82 -0.34 6.24 16 38 H 0.08 1.61 3.26 -51.93 -0.17 1.44 16 39 H 0.08 1.64 7.43 -51.93 -0.39 1.25 16 40 H 0.13 2.38 7.42 -52.49 -0.39 1.99 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -27.23 351.49 -8.50 -35.73 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -4.60 Total: 20.16 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -5.27 Total: -20.61 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.56 Total: -30.94 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.62 Total: -24.63 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -3.86 Total: 15.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.23 -8.50 -35.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144527950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.194 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds