Wall clock time and date at job start Tue Mar 31 2020 14:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 119.99879 * 2 1 4 4 C 1.38218 * 119.99904 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99935 * 359.81143 * 5 4 3 7 7 C 1.38207 * 119.99773 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00534 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.46789 * 322.06891 * 8 7 2 10 10 O 1.42894 * 109.47334 * 202.06524 * 8 7 2 11 11 C 1.50704 * 109.46854 * 82.06402 * 8 7 2 12 12 O 1.21287 * 119.99853 * 64.29716 * 11 8 7 13 13 N 1.34774 * 119.99697 * 244.29234 * 11 8 7 14 14 C 1.37101 * 120.00564 * 355.22200 * 13 11 8 15 15 H 1.08000 * 119.99913 * 316.15118 * 14 13 11 16 16 C 1.38946 * 119.99849 * 136.14423 * 14 13 11 17 17 N 1.31416 * 119.99665 * 166.45707 * 16 14 13 18 18 Si 1.86802 * 120.00389 * 346.46820 * 16 14 13 19 19 H 1.48495 * 109.47230 * 90.25959 * 18 16 14 20 20 H 1.48494 * 109.46900 * 210.26132 * 18 16 14 21 21 H 1.48504 * 109.46626 * 330.25690 * 18 16 14 22 22 C 1.46503 * 119.99637 * 175.22149 * 13 11 8 23 23 C 1.50708 * 109.46955 * 90.00331 * 22 13 11 24 24 C 1.38235 * 119.99619 * 269.72708 * 23 22 13 25 25 C 1.38233 * 119.99846 * 179.76776 * 24 23 22 26 26 C 1.38239 * 119.99910 * 0.48140 * 25 24 23 27 27 C 1.38236 * 119.99839 * 359.79271 * 26 25 24 28 28 C 1.38228 * 119.99934 * 89.99874 * 23 22 13 29 29 H 1.08997 * 109.47071 * 274.78921 * 1 2 3 30 30 H 1.09002 * 109.47600 * 34.78576 * 1 2 3 31 31 H 1.08999 * 109.47321 * 154.79193 * 1 2 3 32 32 H 1.07993 * 120.00104 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.99795 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.99903 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.99831 * 180.23080 * 6 5 4 36 36 H 0.96702 * 114.00136 * 299.99773 * 10 8 7 37 37 H 0.96998 * 120.00056 * 185.01080 * 17 16 14 38 38 H 1.09001 * 109.47374 * 209.99761 * 22 13 11 39 39 H 1.08998 * 109.47444 * 330.00131 * 22 13 11 40 40 H 1.07997 * 120.00242 * 359.97438 * 24 23 22 41 41 H 1.08002 * 120.00457 * 180.25216 * 25 24 23 42 42 H 1.08005 * 120.00163 * 179.76827 * 26 25 24 43 43 H 1.08001 * 119.99907 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00616 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0039 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5612 -2.4116 0.6315 10 8 2.2879 -3.5390 0.5050 11 6 1.0230 -2.8387 -1.4077 12 8 1.8617 -3.0603 -2.2554 13 7 -0.2860 -2.8936 -1.7241 14 6 -1.2347 -2.7402 -0.7463 15 1 -1.1193 -3.2444 0.2018 16 6 -2.3445 -1.9361 -0.9751 17 7 -3.3758 -1.9931 -0.1627 18 14 -2.3707 -0.7744 -2.4377 19 1 -2.9504 -1.4719 -3.6135 20 1 -3.1975 0.4148 -2.1104 21 1 -0.9849 -0.3427 -2.7517 22 6 -0.6950 -3.1171 -3.1130 23 6 -0.8308 -4.5968 -3.3647 24 6 0.2550 -5.3235 -3.8162 25 6 0.1318 -6.6816 -4.0425 26 6 -1.0798 -7.3112 -3.8268 27 6 -2.1671 -6.5833 -3.3807 28 6 -2.0425 -5.2262 -3.1495 29 1 -0.3633 0.0858 1.0240 30 1 -0.3634 0.8440 -0.5863 31 1 -0.3634 -0.9298 -0.4377 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0000 0.0014 35 1 4.1206 -2.1322 0.0077 36 1 3.0950 -3.6755 -0.0098 37 1 -4.1788 -1.4868 -0.3620 38 1 -1.6528 -2.6287 -3.2928 39 1 0.0564 -2.7018 -3.7845 40 1 1.2004 -4.8309 -3.9889 41 1 0.9812 -7.2502 -4.3914 42 1 -1.1771 -8.3716 -4.0072 43 1 -3.1139 -7.0751 -3.2126 44 1 -2.8921 -4.6576 -2.8013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144527950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:46 Heat of formation + Delta-G solvation = -30.254197 kcal Electronic energy + Delta-G solvation = -28436.967788 eV Core-core repulsion = 24705.132964 eV Total energy + Delta-G solvation = -3731.834824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70487 -40.34042 -39.47533 -37.65254 -36.81787 -34.30968 -33.86466 -32.61869 -32.06682 -31.74172 -28.80929 -28.04771 -27.01228 -26.24655 -23.39772 -23.06052 -22.50939 -21.91201 -21.19567 -19.49354 -18.75104 -18.03520 -17.68870 -17.46194 -16.56820 -16.37540 -16.31093 -16.00241 -15.87401 -15.55811 -15.24471 -14.84306 -14.69040 -14.53091 -14.34166 -14.21301 -14.00152 -13.92194 -13.59931 -13.35030 -13.24819 -13.13102 -13.03050 -12.62643 -12.50472 -12.24090 -12.02571 -11.98389 -11.89943 -11.68425 -11.54144 -11.08662 -10.56514 -9.83108 -9.77953 -9.70303 -9.63985 -9.41803 -8.53082 -6.26622 0.34817 0.43576 0.47545 0.54012 1.10978 1.24732 1.33000 1.69033 2.07277 2.42221 2.74091 2.94232 3.02808 3.47455 3.75494 3.82705 3.93617 3.95731 4.03272 4.09642 4.18999 4.20769 4.27325 4.32426 4.41947 4.45931 4.47195 4.71454 4.72100 4.77641 4.78816 4.82860 5.03220 5.11285 5.11547 5.19652 5.32521 5.48748 5.56653 5.57197 5.60055 5.61919 5.75872 5.78605 5.99336 6.11640 6.14338 6.15841 6.52091 6.84580 7.23734 7.61631 8.56718 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.005532 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.421825 B = 5060.188138 C = 6395.915400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.109 4.109 7 C -0.126 4.126 8 C 0.145 3.855 9 H 0.122 0.878 10 O -0.547 6.547 11 C 0.467 3.533 12 O -0.598 6.598 13 N -0.457 5.457 14 C -0.338 4.338 15 H 0.079 0.921 16 C 0.058 3.942 17 N -0.882 5.882 18 Si 0.901 3.099 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.261 1.261 22 C 0.130 3.870 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.113 4.113 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.384 0.616 37 H 0.284 0.716 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 0.140 -3.639 8.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.127 4.127 7 C -0.127 4.127 8 C 0.083 3.917 9 H 0.140 0.860 10 O -0.354 6.354 11 C 0.256 3.744 12 O -0.483 6.483 13 N -0.179 5.179 14 C -0.465 4.465 15 H 0.097 0.903 16 C -0.149 4.149 17 N -0.517 5.517 18 Si 0.727 3.273 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.185 1.185 22 C 0.008 3.992 23 C -0.108 4.108 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.131 4.131 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.151 0.849 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.161 0.839 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.460 0.116 -3.504 8.243 hybrid contribution -0.350 0.748 -0.773 1.131 sum 7.109 0.865 -4.277 8.342 Atomic orbital electron populations 1.21637 0.91660 1.06007 1.02821 1.19961 0.96274 0.93260 0.98837 1.21305 0.95360 0.97124 1.01558 1.21516 0.93610 0.99376 0.98594 1.21419 1.01222 0.91576 1.00369 1.21089 0.92548 0.99892 0.99148 1.20122 0.95185 0.93788 1.03567 1.20626 0.93532 0.85035 0.92535 0.86032 1.86586 1.37113 1.55834 1.55868 1.21468 0.82655 0.79111 0.91169 1.90497 1.51708 1.54734 1.51313 1.43804 1.04651 1.62838 1.06566 1.18657 1.02478 1.28580 0.96748 0.90318 1.25695 0.94883 0.96201 0.98093 1.69676 1.03813 1.40593 1.37656 0.86623 0.79495 0.80227 0.80956 1.18878 1.20326 1.18491 1.20721 0.99819 0.93307 0.85348 1.20150 0.94799 0.95815 1.00030 1.21202 0.97637 0.95333 0.99151 1.21411 0.98903 0.93745 1.00501 1.21486 0.92318 1.01039 0.98786 1.21403 1.00314 0.93189 0.99633 1.21144 0.96911 0.96047 0.99044 0.91137 0.92507 0.87301 0.84494 0.82722 0.82814 0.84886 0.76566 0.90594 0.91293 0.90977 0.86817 0.83711 0.82789 0.83908 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.63 8.35 71.24 0.59 -6.04 16 2 C -0.08 -3.10 5.88 -19.87 -0.12 -3.22 16 3 C -0.14 -4.11 9.72 22.27 0.22 -3.90 16 4 C -0.11 -2.85 10.05 22.27 0.22 -2.63 16 5 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 6 C -0.11 -3.45 9.30 22.27 0.21 -3.24 16 7 C -0.13 -4.79 5.02 -19.86 -0.10 -4.89 16 8 C 0.14 6.12 2.81 29.10 0.08 6.20 16 9 H 0.12 5.62 5.10 -2.39 -0.01 5.61 16 10 O -0.55 -21.32 12.91 -140.56 -1.81 -23.14 16 11 C 0.47 21.64 6.23 87.66 0.55 22.18 16 12 O -0.60 -28.59 15.72 5.37 0.08 -28.50 16 13 N -0.46 -21.59 1.88 -639.58 -1.21 -22.80 16 14 C -0.34 -16.90 6.58 84.04 0.55 -16.35 16 15 H 0.08 4.36 7.20 -2.91 -0.02 4.34 16 16 C 0.06 2.89 4.71 84.92 0.40 3.29 16 17 N -0.88 -45.78 13.95 21.66 0.30 -45.48 16 18 Si 0.90 39.80 22.74 68.60 1.56 41.36 16 19 H -0.26 -11.11 6.59 99.48 0.66 -10.46 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.13 5.79 4.22 85.63 0.36 6.15 16 23 C -0.11 -4.37 5.46 -19.87 -0.11 -4.48 16 24 C -0.11 -4.26 9.58 22.27 0.21 -4.05 16 25 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.12 -3.23 10.05 22.27 0.22 -3.00 16 27 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 28 C -0.11 -4.33 9.70 22.27 0.22 -4.11 16 29 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.06 2.14 7.78 -2.39 -0.02 2.12 16 31 H 0.11 4.87 1.04 -2.39 0.00 4.86 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.13 3.70 6.37 -2.91 -0.02 3.68 16 36 H 0.38 12.56 7.20 -74.06 -0.53 12.03 16 37 H 0.28 13.77 8.32 -92.71 -0.77 13.00 16 38 H 0.07 3.09 3.26 -2.39 -0.01 3.08 16 39 H 0.07 3.19 7.43 -2.39 -0.02 3.18 16 40 H 0.11 4.41 7.42 -2.91 -0.02 4.39 16 41 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 43 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 44 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -61.08 351.49 3.57 -57.51 By element: Atomic # 1 Polarization: 49.09 SS G_CDS: 0.46 Total: 49.55 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.18 Total: -28.51 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.90 Total: -68.27 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -1.73 Total: -51.64 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.56 Total: 41.36 kcal Total: -61.08 3.57 -57.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144527950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.257 kcal (2) G-P(sol) polarization free energy of solvation -61.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds