Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99626 * 2 1 4 4 H 1.48499 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47427 * 299.99351 * 3 2 1 6 6 H 1.48496 * 109.47196 * 59.99768 * 3 2 1 7 7 C 1.38807 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 157.75963 * 7 2 1 9 9 N 1.36940 * 119.99998 * 337.75525 * 7 2 1 10 10 C 1.46498 * 120.00159 * 326.07803 * 9 7 2 11 11 C 1.52995 * 109.47019 * 264.41701 * 10 9 7 12 12 O 1.45208 * 109.47045 * 64.99773 * 11 10 9 13 13 C 1.34709 * 116.99749 * 179.97438 * 12 11 10 14 14 O 1.21471 * 120.00350 * 0.02562 * 13 12 11 15 15 C 1.47728 * 120.00029 * 180.02562 * 13 12 11 16 16 C 1.39623 * 120.15453 * 179.97438 * 15 13 12 17 17 C 1.37944 * 119.85365 * 179.97438 * 16 15 13 18 18 C 1.38371 * 120.14615 * 359.97438 * 17 16 15 19 19 C 1.38370 * 120.30482 * 0.04556 * 18 17 16 20 20 C 1.37947 * 120.14878 * 359.95130 * 19 18 17 21 21 C 1.46505 * 119.99675 * 146.07260 * 9 7 2 22 22 C 1.50694 * 109.47154 * 270.00214 * 21 9 7 23 23 C 1.38230 * 120.00022 * 269.72483 * 22 21 9 24 24 C 1.38238 * 120.00147 * 179.76589 * 23 22 21 25 25 C 1.38240 * 119.99507 * 0.51260 * 24 23 22 26 26 C 1.38231 * 120.00402 * 359.74219 * 25 24 23 27 27 C 1.38234 * 119.99616 * 0.02562 * 26 25 24 28 28 H 0.96999 * 119.99675 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46751 * 144.41739 * 10 9 7 30 30 H 1.08996 * 109.47203 * 24.41602 * 10 9 7 31 31 H 1.09001 * 109.47267 * 305.00465 * 11 10 9 32 32 H 1.08993 * 109.47742 * 185.00052 * 11 10 9 33 33 H 1.08004 * 120.07642 * 359.70407 * 16 15 13 34 34 H 1.07995 * 119.92769 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.84919 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.92336 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.07549 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47100 * 30.00575 * 21 9 7 39 39 H 1.08998 * 109.47037 * 150.00163 * 21 9 7 40 40 H 1.08001 * 120.00272 * 0.02562 * 23 22 21 41 41 H 1.07999 * 120.00471 * 180.23140 * 24 23 22 42 42 H 1.08000 * 119.99721 * 179.72271 * 25 24 23 43 43 H 1.08001 * 120.00127 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.99997 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0300 -1.2370 -0.3535 9 7 1.4020 -2.3437 0.4500 10 6 0.4310 -2.2740 1.5447 11 6 1.1332 -2.5783 2.8695 12 8 2.1059 -1.5377 3.1518 13 6 2.8152 -1.6565 4.2908 14 8 2.6269 -2.6036 5.0278 15 6 3.8223 -0.6349 4.6437 16 6 4.5590 -0.7546 5.8238 17 6 5.4982 0.2027 6.1470 18 6 5.7114 1.2794 5.3044 19 6 4.9846 1.4044 4.1336 20 6 4.0423 0.4543 3.7983 21 6 1.7223 -3.6347 -0.1640 22 6 0.7845 -3.8897 -1.3157 23 6 -0.4081 -4.5550 -1.1017 24 6 -1.2707 -4.7846 -2.1572 25 6 -0.9356 -4.3582 -3.4288 26 6 0.2594 -3.6975 -3.6439 27 6 1.1197 -3.4637 -2.5874 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3595 -3.0053 1.3762 30 1 -0.0013 -1.2742 1.5839 31 1 1.6407 -3.5404 2.7991 32 1 0.3962 -2.6140 3.6717 33 1 4.3908 -1.5924 6.4842 34 1 6.0684 0.1115 7.0596 35 1 6.4477 2.0263 5.5624 36 1 5.1557 2.2475 3.4807 37 1 3.4754 0.5533 2.8843 38 1 2.7495 -3.6189 -0.5285 39 1 1.6118 -4.4267 0.5767 40 1 -0.6680 -4.8917 -0.1089 41 1 -2.2042 -5.3011 -1.9894 42 1 -1.6074 -4.5415 -4.2543 43 1 0.5213 -3.3648 -4.6374 44 1 2.0535 -2.9479 -2.7554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209046671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = -10.719439 kcal Electronic energy + Delta-G solvation = -27039.923747 eV Core-core repulsion = 23308.936014 eV Total energy + Delta-G solvation = -3730.987733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.06131 -38.59956 -38.42259 -36.28894 -35.18218 -31.95982 -31.46422 -30.92317 -30.50177 -30.19367 -28.50985 -25.53288 -24.50804 -23.13253 -22.45954 -21.87428 -21.21209 -20.49383 -19.79278 -17.73443 -16.91176 -16.68214 -16.08929 -15.77279 -15.60993 -14.94566 -14.59252 -14.42694 -14.40189 -14.29892 -13.87481 -13.60379 -13.42337 -12.93885 -12.79357 -12.74460 -12.40159 -12.12976 -11.88679 -11.79929 -11.57809 -11.25477 -11.05642 -10.88952 -10.84035 -10.69914 -10.37230 -10.24287 -10.05558 -9.96506 -9.89836 -9.76644 -8.98676 -8.96148 -8.54014 -8.22504 -8.00427 -6.71683 -5.84429 -3.34282 0.84643 1.39660 2.08154 2.10957 2.88444 3.24876 3.31184 3.40448 3.41962 3.92099 4.38776 4.55177 4.84387 4.94219 5.02786 5.19786 5.28028 5.42964 5.45296 5.49955 5.52445 5.53631 5.65577 5.79263 5.84351 5.91847 6.02850 6.07434 6.10162 6.21218 6.24559 6.33006 6.35357 6.43081 6.47668 6.63673 6.65769 6.73221 6.76779 6.89182 7.05500 7.12085 7.16572 7.46386 7.54446 7.72689 7.77404 8.28197 8.44627 9.09702 9.73801 10.28501 11.18353 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.003726 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.289259 B = 7513.330607 C = 8633.268471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.016 3.984 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.566 5.566 10 C 0.141 3.859 11 C 0.055 3.945 12 O -0.311 6.311 13 C 0.498 3.502 14 O -0.527 6.527 15 C -0.118 4.118 16 C -0.061 4.061 17 C -0.139 4.139 18 C -0.092 4.092 19 C -0.136 4.136 20 C -0.055 4.055 21 C 0.172 3.828 22 C -0.072 4.072 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.125 4.125 27 C -0.097 4.097 28 H 0.254 0.746 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -2.081 5.034 7.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.184 4.184 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.284 5.284 10 C 0.014 3.986 11 C -0.022 4.022 12 O -0.226 6.226 13 C 0.343 3.657 14 O -0.419 6.419 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.157 4.157 18 C -0.110 4.110 19 C -0.154 4.154 20 C -0.073 4.073 21 C 0.046 3.954 22 C -0.075 4.075 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.395 -2.214 5.218 7.825 hybrid contribution 0.099 0.893 -0.059 0.900 sum 5.494 -1.321 5.158 7.651 Atomic orbital electron populations 1.69976 1.05478 1.25575 1.51627 1.25024 0.94897 0.98453 1.00015 0.86480 0.80020 0.84419 0.77496 1.19794 1.21882 1.21108 1.19011 0.94068 0.85198 1.38934 0.91932 1.43928 1.48556 1.02266 1.33685 1.21142 0.90133 1.04871 0.82475 1.24191 0.89078 0.88589 1.00299 1.86798 1.48534 1.49736 1.37486 1.21295 0.80198 0.84303 0.79886 1.90752 1.66764 1.32826 1.51596 1.19299 0.98921 0.96241 0.97471 1.21262 0.93421 0.98479 0.94762 1.21056 0.99209 0.94982 1.00404 1.21392 0.98199 0.97351 0.94030 1.21219 0.96900 0.99734 0.97513 1.21742 0.95316 0.91568 0.98715 1.20105 0.95448 0.89168 0.90699 1.20979 0.96785 0.93863 0.95871 1.20908 0.94654 1.00102 0.98010 1.20950 0.98952 1.01196 0.93358 1.20874 0.97257 1.01257 0.96700 1.21019 0.94958 0.99680 0.98613 1.20945 0.99718 0.98582 0.92398 0.93594 0.93104 0.87003 0.92868 0.92944 0.84781 0.85404 0.85692 0.85331 0.83779 0.92716 0.93784 0.87287 0.87344 0.87429 0.87270 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 11.34 55.49 0.63 -23.58 16 2 C 0.02 0.42 4.92 -17.43 -0.09 0.34 16 3 Si 0.89 20.44 29.61 -169.99 -5.03 15.40 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.14 9.28 -15.06 -0.14 -6.28 16 8 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 9 N -0.57 -13.01 2.40 -174.62 -0.42 -13.43 16 10 C 0.14 3.09 5.64 -4.05 -0.02 3.07 16 11 C 0.05 1.09 5.81 37.15 0.22 1.31 16 12 O -0.31 -6.59 9.22 -40.51 -0.37 -6.96 16 13 C 0.50 9.70 7.90 34.61 0.27 9.97 16 14 O -0.53 -10.86 16.14 -19.24 -0.31 -11.17 16 15 C -0.12 -1.98 5.87 -104.98 -0.62 -2.60 16 16 C -0.06 -0.85 9.60 -39.17 -0.38 -1.23 16 17 C -0.14 -1.56 10.03 -39.64 -0.40 -1.96 16 18 C -0.09 -1.01 10.04 -39.48 -0.40 -1.41 16 19 C -0.14 -1.79 10.03 -39.64 -0.40 -2.19 16 20 C -0.06 -0.90 9.62 -39.17 -0.38 -1.28 16 21 C 0.17 3.44 5.82 -5.19 -0.03 3.41 16 22 C -0.07 -1.41 5.46 -104.63 -0.57 -1.99 16 23 C -0.12 -2.15 9.70 -39.58 -0.38 -2.54 16 24 C -0.13 -2.13 10.05 -39.58 -0.40 -2.52 16 25 C -0.14 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.12 -2.18 10.05 -39.59 -0.40 -2.57 16 27 C -0.10 -1.89 9.70 -39.58 -0.38 -2.27 16 28 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.05 1.06 8.11 -51.93 -0.42 0.63 16 30 H 0.11 2.83 5.35 -51.93 -0.28 2.55 16 31 H 0.05 1.04 8.11 -51.93 -0.42 0.61 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.77 7.65 -52.48 -0.40 1.37 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.14 2.63 7.61 -52.49 -0.40 2.23 16 38 H 0.05 1.08 7.98 -51.93 -0.41 0.66 16 39 H 0.04 0.80 7.99 -51.93 -0.41 0.39 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -29.57 381.22 -10.75 -40.32 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.11 Total: 7.15 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.88 Total: -13.48 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.21 Total: -37.01 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.68 Total: -18.13 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.57 -10.75 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209046671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.602 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds