Wall clock time and date at job start Tue Mar 31 2020 13:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99626 * 2 1 4 4 H 1.48499 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47427 * 299.99351 * 3 2 1 6 6 H 1.48496 * 109.47196 * 59.99768 * 3 2 1 7 7 C 1.38807 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 157.75963 * 7 2 1 9 9 N 1.36940 * 119.99998 * 337.75525 * 7 2 1 10 10 C 1.46498 * 120.00159 * 326.07803 * 9 7 2 11 11 C 1.52995 * 109.47019 * 264.41701 * 10 9 7 12 12 O 1.45208 * 109.47045 * 64.99773 * 11 10 9 13 13 C 1.34709 * 116.99749 * 179.97438 * 12 11 10 14 14 O 1.21471 * 120.00350 * 0.02562 * 13 12 11 15 15 C 1.47728 * 120.00029 * 180.02562 * 13 12 11 16 16 C 1.39623 * 120.15453 * 179.97438 * 15 13 12 17 17 C 1.37944 * 119.85365 * 179.97438 * 16 15 13 18 18 C 1.38371 * 120.14615 * 359.97438 * 17 16 15 19 19 C 1.38370 * 120.30482 * 0.04556 * 18 17 16 20 20 C 1.37947 * 120.14878 * 359.95130 * 19 18 17 21 21 C 1.46505 * 119.99675 * 146.07260 * 9 7 2 22 22 C 1.50694 * 109.47154 * 270.00214 * 21 9 7 23 23 C 1.38230 * 120.00022 * 269.72483 * 22 21 9 24 24 C 1.38238 * 120.00147 * 179.76589 * 23 22 21 25 25 C 1.38240 * 119.99507 * 0.51260 * 24 23 22 26 26 C 1.38231 * 120.00402 * 359.74219 * 25 24 23 27 27 C 1.38234 * 119.99616 * 0.02562 * 26 25 24 28 28 H 0.96999 * 119.99675 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46751 * 144.41739 * 10 9 7 30 30 H 1.08996 * 109.47203 * 24.41602 * 10 9 7 31 31 H 1.09001 * 109.47267 * 305.00465 * 11 10 9 32 32 H 1.08993 * 109.47742 * 185.00052 * 11 10 9 33 33 H 1.08004 * 120.07642 * 359.70407 * 16 15 13 34 34 H 1.07995 * 119.92769 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.84919 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.92336 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.07549 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47100 * 30.00575 * 21 9 7 39 39 H 1.08998 * 109.47037 * 150.00163 * 21 9 7 40 40 H 1.08001 * 120.00272 * 0.02562 * 23 22 21 41 41 H 1.07999 * 120.00471 * 180.23140 * 24 23 22 42 42 H 1.08000 * 119.99721 * 179.72271 * 25 24 23 43 43 H 1.08001 * 120.00127 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.99997 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0300 -1.2370 -0.3535 9 7 1.4020 -2.3437 0.4500 10 6 0.4310 -2.2740 1.5447 11 6 1.1332 -2.5783 2.8695 12 8 2.1059 -1.5377 3.1518 13 6 2.8152 -1.6565 4.2908 14 8 2.6269 -2.6036 5.0278 15 6 3.8223 -0.6349 4.6437 16 6 4.5590 -0.7546 5.8238 17 6 5.4982 0.2027 6.1470 18 6 5.7114 1.2794 5.3044 19 6 4.9846 1.4044 4.1336 20 6 4.0423 0.4543 3.7983 21 6 1.7223 -3.6347 -0.1640 22 6 0.7845 -3.8897 -1.3157 23 6 -0.4081 -4.5550 -1.1017 24 6 -1.2707 -4.7846 -2.1572 25 6 -0.9356 -4.3582 -3.4288 26 6 0.2594 -3.6975 -3.6439 27 6 1.1197 -3.4637 -2.5874 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3595 -3.0053 1.3762 30 1 -0.0013 -1.2742 1.5839 31 1 1.6407 -3.5404 2.7991 32 1 0.3962 -2.6140 3.6717 33 1 4.3908 -1.5924 6.4842 34 1 6.0684 0.1115 7.0596 35 1 6.4477 2.0263 5.5624 36 1 5.1557 2.2475 3.4807 37 1 3.4754 0.5533 2.8843 38 1 2.7495 -3.6189 -0.5285 39 1 1.6118 -4.4267 0.5767 40 1 -0.6680 -4.8917 -0.1089 41 1 -2.2042 -5.3011 -1.9894 42 1 -1.6074 -4.5415 -4.2543 43 1 0.5213 -3.3648 -4.6374 44 1 2.0535 -2.9479 -2.7554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209046671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:50 Heat of formation + Delta-G solvation = -22.733038 kcal Electronic energy + Delta-G solvation = -27040.444696 eV Core-core repulsion = 23308.936014 eV Total energy + Delta-G solvation = -3731.508682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50324 -39.99795 -39.63494 -37.92613 -36.85745 -33.75566 -32.72134 -32.03184 -31.93513 -31.58931 -30.17363 -27.26746 -25.92975 -24.68483 -23.54663 -23.29034 -22.74319 -21.86091 -21.39378 -19.06600 -18.74896 -18.11670 -17.45920 -17.33566 -16.84373 -16.67974 -15.95325 -15.89916 -15.79917 -15.50990 -15.43675 -15.27350 -14.53368 -14.41649 -14.21408 -14.11558 -13.81927 -13.56046 -13.43517 -13.32353 -13.01910 -12.79263 -12.59625 -12.55774 -12.36026 -12.08894 -12.00963 -11.77967 -11.74001 -11.62759 -11.52692 -11.42959 -10.49078 -10.05575 -10.01108 -9.62445 -9.44542 -8.60577 -7.80916 -5.33140 -0.31441 0.35928 0.67823 0.70139 1.44005 1.47721 1.53952 1.56447 1.81519 2.54038 2.80268 3.05679 3.32077 3.66662 3.74752 3.90846 3.99607 4.11608 4.18402 4.19663 4.27006 4.34278 4.40313 4.41485 4.43385 4.45488 4.55307 4.61973 4.79520 4.80750 4.89695 4.94430 5.03010 5.05009 5.32214 5.33293 5.34658 5.35644 5.44699 5.52570 5.69215 5.71098 5.75418 5.77353 5.89366 6.00368 6.33827 6.47305 6.77837 7.17328 7.85199 8.36572 9.19103 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.003726 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.289259 B = 7513.330607 C = 8633.268471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.025 4.025 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.285 1.285 7 C -0.238 4.238 8 H 0.053 0.947 9 N -0.578 5.578 10 C 0.147 3.853 11 C 0.061 3.939 12 O -0.333 6.333 13 C 0.494 3.506 14 O -0.546 6.546 15 C -0.147 4.147 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.073 4.073 19 C -0.140 4.140 20 C -0.079 4.079 21 C 0.173 3.827 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.248 0.752 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.138 0.862 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -1.881 5.870 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.227 1.227 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.070 0.930 9 N -0.297 5.297 10 C 0.021 3.979 11 C -0.015 4.015 12 O -0.247 6.247 13 C 0.342 3.658 14 O -0.440 6.440 15 C -0.148 4.148 16 C -0.084 4.084 17 C -0.143 4.143 18 C -0.091 4.091 19 C -0.158 4.158 20 C -0.097 4.097 21 C 0.048 3.952 22 C -0.095 4.095 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.140 4.140 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.187 0.813 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.629 -2.036 6.050 9.202 hybrid contribution -0.217 0.762 -0.311 0.852 sum 6.411 -1.273 5.738 8.698 Atomic orbital electron populations 1.70096 1.06526 1.25488 1.53670 1.25512 0.95404 1.00661 1.00667 0.85718 0.79678 0.81504 0.76796 1.18694 1.22665 1.21147 1.19055 0.93692 0.86359 1.37759 0.92976 1.43985 1.48625 1.02587 1.34456 1.20968 0.90403 1.03324 0.83250 1.24011 0.89302 0.88522 0.99657 1.86788 1.49064 1.50160 1.38714 1.21858 0.80203 0.84785 0.78983 1.90715 1.67568 1.33799 1.51916 1.19307 0.99829 0.96260 0.99398 1.21456 0.93727 0.99552 0.93640 1.21533 0.97724 0.93524 1.01473 1.21887 0.97377 0.97616 0.92203 1.21484 0.96141 0.99286 0.98857 1.21588 0.96935 0.93074 0.98113 1.20104 0.95436 0.88193 0.91435 1.20943 0.97437 0.95395 0.95759 1.21135 0.94409 1.00091 0.99248 1.21356 0.99679 1.00599 0.93013 1.21318 0.97087 0.99747 0.97716 1.21334 0.95070 0.99468 0.99102 1.21063 1.00216 0.99497 0.93260 0.94291 0.92157 0.90091 0.92474 0.91752 0.84455 0.81315 0.81331 0.83647 0.86954 0.93170 0.92202 0.86255 0.84302 0.84085 0.85047 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 11.34 21.65 0.25 -51.70 16 2 C -0.03 -1.37 4.92 84.86 0.42 -0.95 16 3 Si 0.93 43.47 29.61 68.60 2.03 45.50 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.24 -12.54 9.28 84.03 0.78 -11.76 16 8 H 0.05 2.80 7.92 -2.91 -0.02 2.77 16 9 N -0.58 -27.48 2.40 -706.36 -1.69 -29.17 16 10 C 0.15 6.72 5.64 86.38 0.49 7.20 16 11 C 0.06 2.52 5.81 71.98 0.42 2.94 16 12 O -0.33 -14.77 9.22 -56.18 -0.52 -15.29 16 13 C 0.49 20.02 7.90 70.33 0.56 20.58 16 14 O -0.55 -23.09 16.14 19.93 0.32 -22.77 16 15 C -0.15 -5.00 5.87 -20.10 -0.12 -5.12 16 16 C -0.07 -1.73 9.60 22.53 0.22 -1.52 16 17 C -0.13 -2.32 10.03 22.23 0.22 -2.10 16 18 C -0.07 -1.31 10.04 22.33 0.22 -1.08 16 19 C -0.14 -3.42 10.03 22.23 0.22 -3.20 16 20 C -0.08 -2.60 9.62 22.54 0.22 -2.39 16 21 C 0.17 7.14 5.82 85.63 0.50 7.64 16 22 C -0.09 -3.69 5.46 -19.87 -0.11 -3.80 16 23 C -0.13 -4.66 9.70 22.27 0.22 -4.44 16 24 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 25 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 26 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 27 C -0.12 -4.77 9.70 22.27 0.22 -4.55 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.06 2.57 8.11 -2.39 -0.02 2.55 16 30 H 0.08 4.30 5.35 -2.39 -0.01 4.28 16 31 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.14 3.47 7.65 -2.91 -0.02 3.45 16 34 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.11 4.37 7.61 -2.91 -0.02 4.35 16 38 H 0.05 2.06 7.98 -2.38 -0.02 2.04 16 39 H 0.06 2.22 7.99 -2.39 -0.02 2.20 16 40 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -67.07 381.22 6.51 -60.56 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.99 Total: 27.55 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 5.14 Total: -14.68 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.45 Total: -80.87 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.20 Total: -38.06 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.07 6.51 -60.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209046671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.828 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds