Wall clock time and date at job start Tue Mar 31 2020 13:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48498 * 109.46963 * 269.99641 * 3 2 1 5 5 H 1.48501 * 109.46938 * 29.99830 * 3 2 1 6 6 H 1.48497 * 109.47183 * 149.99753 * 3 2 1 7 7 C 1.38613 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00097 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.35789 * 116.99543 * 184.66637 * 9 7 2 11 11 C 1.38719 * 120.10729 * 5.54662 * 10 9 7 12 12 C 1.38174 * 120.00772 * 179.97438 * 11 10 9 13 13 C 1.38358 * 120.21747 * 0.02562 * 12 11 10 14 14 C 1.38182 * 120.20486 * 359.97438 * 13 12 11 15 15 C 1.38786 * 119.99160 * 359.97438 * 14 13 12 16 16 N 1.39761 * 120.10765 * 179.97438 * 15 14 13 17 17 C 1.39915 * 120.00266 * 253.62110 * 16 15 14 18 18 C 1.38896 * 120.02017 * 359.08188 * 17 16 15 19 19 C 1.38088 * 119.97780 * 179.76912 * 18 17 16 20 20 C 1.38719 * 120.02137 * 0.51174 * 19 18 17 21 21 O 1.35987 * 119.98005 * 179.76260 * 20 19 18 22 22 C 1.42903 * 116.99738 * 359.97438 * 21 20 19 23 23 C 1.53009 * 109.47026 * 179.97438 * 22 21 20 24 24 C 1.52996 * 117.49686 * 243.74655 * 23 22 21 25 25 C 1.53000 * 117.49904 * 175.08751 * 23 22 21 26 26 C 1.38715 * 120.04080 * 359.74511 * 20 19 18 27 27 C 1.38091 * 120.02305 * 359.97438 * 26 20 19 28 28 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99166 * 0.26085 * 11 10 9 30 30 H 1.08007 * 119.89138 * 180.02562 * 12 11 10 31 31 H 1.07993 * 119.89568 * 179.97438 * 13 12 11 32 32 H 1.07997 * 120.00367 * 180.02562 * 14 13 12 33 33 H 0.97006 * 119.99565 * 73.61682 * 16 15 14 34 34 H 1.08005 * 120.01069 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.99013 * 180.25313 * 19 18 17 36 36 H 1.08991 * 109.47163 * 299.99287 * 22 21 20 37 37 H 1.09001 * 109.47367 * 59.99760 * 22 21 20 38 38 H 1.09005 * 115.54654 * 29.41566 * 23 22 21 39 39 H 1.09002 * 117.50255 * 0.02562 * 24 23 22 40 40 H 1.09000 * 117.49825 * 145.02344 * 24 23 22 41 41 H 1.09000 * 117.49620 * 214.98374 * 25 23 22 42 42 H 1.09000 * 117.49822 * 359.97438 * 25 23 22 43 43 H 1.07996 * 119.98778 * 179.97438 * 26 20 19 44 44 H 1.07999 * 120.01244 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3349 -2.3679 0.0005 10 6 2.0711 -3.5046 0.0995 11 6 3.4402 -3.4309 0.3102 12 6 4.1872 -4.5889 0.4111 13 6 3.5743 -5.8246 0.3022 14 6 2.2111 -5.9084 0.0923 15 6 1.4524 -4.7507 -0.0093 16 7 0.0735 -4.8327 -0.2222 17 6 -0.4608 -4.5178 -1.4764 18 6 0.3767 -4.1055 -2.5048 19 6 -0.1509 -3.7996 -3.7437 20 6 -1.5182 -3.8938 -3.9582 21 8 -2.0375 -3.5877 -5.1772 22 6 -1.1169 -3.1759 -6.1896 23 6 -1.8800 -2.8769 -7.4817 24 6 -1.5808 -3.7553 -8.6982 25 6 -1.0829 -2.3085 -8.6575 26 6 -2.3560 -4.3004 -2.9302 27 6 -1.8296 -4.6123 -1.6922 28 1 -0.4850 0.8400 -0.0004 29 1 3.9215 -2.4682 0.3999 30 1 5.2530 -4.5293 0.5755 31 1 4.1632 -6.7263 0.3815 32 1 1.7360 -6.8746 0.0082 33 1 -0.5131 -5.1079 0.4998 34 1 1.4408 -4.0281 -2.3368 35 1 0.5006 -3.4828 -4.5447 36 1 -0.5928 -2.2786 -5.8610 37 1 -0.3952 -3.9726 -6.3704 38 1 -2.9045 -2.5280 -7.3526 39 1 -0.8408 -4.5465 -8.5779 40 1 -2.4085 -3.9839 -9.3696 41 1 -1.5832 -1.5857 -9.3021 42 1 -0.0150 -2.1471 -8.5104 43 1 -3.4204 -4.3731 -3.0980 44 1 -2.4820 -4.9293 -0.8921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:16 Heat of formation + Delta-G solvation = 22.481642 kcal Electronic energy + Delta-G solvation = -26686.646230 eV Core-core repulsion = 22957.098203 eV Total energy + Delta-G solvation = -3729.548026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.85256 -39.21300 -37.83422 -36.78368 -36.27761 -34.09753 -32.29383 -30.50984 -29.75642 -28.91073 -27.69510 -26.40817 -25.34401 -22.75392 -22.58278 -21.82517 -21.55332 -20.56941 -20.44694 -17.99452 -17.80590 -17.27696 -16.90059 -15.91896 -15.82459 -15.34741 -14.72428 -14.68820 -14.53397 -14.33939 -13.92095 -13.75922 -13.40412 -13.28362 -12.82784 -12.79541 -12.63911 -12.44628 -11.95052 -11.77190 -11.72296 -11.47873 -11.31147 -11.26743 -11.02288 -10.89315 -10.79310 -10.64228 -10.49584 -10.27573 -10.05851 -9.52198 -9.13352 -8.86557 -8.42714 -8.14538 -7.29656 -6.52240 -6.45492 -4.05303 1.92435 1.98749 2.25827 2.31205 3.10585 3.10970 3.15695 3.34327 3.72551 3.92779 4.11730 4.43863 4.49243 4.63028 4.71715 4.88662 5.06928 5.14490 5.16138 5.31860 5.39191 5.43601 5.49530 5.58162 5.60728 5.68077 5.74405 5.86039 5.88548 5.90602 5.97622 6.07655 6.12490 6.24118 6.42105 6.57044 6.62745 6.69956 6.92182 6.99163 7.01930 7.08611 7.19212 7.29453 7.30690 7.62988 7.88069 7.94101 8.20650 8.42128 8.97633 9.66814 10.69500 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.004000 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.737827 B = 6997.749491 C = 8618.155207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.090 0.910 9 O -0.155 6.155 10 C 0.146 3.854 11 C -0.233 4.233 12 C -0.072 4.072 13 C -0.211 4.211 14 C -0.077 4.077 15 C 0.059 3.941 16 N -0.681 5.681 17 C 0.205 3.795 18 C -0.127 4.127 19 C -0.158 4.158 20 C 0.062 3.938 21 O -0.320 6.320 22 C 0.093 3.907 23 C -0.152 4.152 24 C -0.178 4.178 25 C -0.173 4.173 26 C -0.107 4.107 27 C -0.158 4.158 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.398 0.602 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -7.721 -9.400 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.108 0.892 9 O -0.057 6.057 10 C 0.089 3.911 11 C -0.253 4.253 12 C -0.091 4.091 13 C -0.231 4.231 14 C -0.097 4.097 15 C -0.035 4.035 16 N -0.306 5.306 17 C 0.104 3.896 18 C -0.150 4.150 19 C -0.178 4.178 20 C 0.017 3.983 21 O -0.235 6.235 22 C 0.017 3.983 23 C -0.170 4.170 24 C -0.215 4.215 25 C -0.210 4.210 26 C -0.126 4.126 27 C -0.181 4.181 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.233 0.767 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.972 -7.457 -9.494 12.111 hybrid contribution 0.679 0.979 0.390 1.253 sum -0.294 -6.478 -9.104 11.177 Atomic orbital electron populations 1.70065 1.05843 1.27627 1.44918 1.25250 0.95783 0.98703 0.96460 0.85774 0.78971 0.80321 0.78752 1.19876 1.20235 1.19210 1.21313 0.91739 0.80997 1.53129 0.89233 1.84063 1.33519 1.10963 1.77168 1.19772 0.90507 0.87911 0.92910 1.21115 0.93828 0.99108 1.11261 1.20805 0.98536 0.92301 0.97439 1.20470 0.94206 0.96895 1.11511 1.20873 0.93555 0.96302 0.98968 1.16590 0.83770 0.90151 1.12997 1.41408 1.04144 1.75179 1.09897 1.17708 0.91747 0.94552 0.85589 1.20417 0.99734 1.02913 0.91892 1.20881 0.93657 1.05020 0.98193 1.18598 0.91869 1.02624 0.85222 1.85953 1.35923 1.82985 1.18629 1.22150 0.91110 0.99196 0.85795 1.22114 1.01230 1.05088 0.88567 1.23093 1.03572 0.93926 1.00894 1.22990 1.00513 0.96857 1.00603 1.19939 0.98761 1.02811 0.91103 1.20255 0.92947 1.07746 0.97132 0.92026 0.85381 0.87400 0.87401 0.86843 0.76653 0.86119 0.86400 0.91810 0.92392 0.86716 0.88605 0.88627 0.88340 0.88507 0.85954 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.71 13.67 55.48 0.76 -23.95 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.40 -10.80 9.45 30.87 0.29 -10.50 16 8 H 0.09 2.27 5.28 -52.49 -0.28 2.00 16 9 O -0.16 -4.25 9.26 -0.01 0.00 -4.25 16 10 C 0.15 3.39 5.61 -38.91 -0.22 3.17 16 11 C -0.23 -4.90 9.13 -39.43 -0.36 -5.26 16 12 C -0.07 -1.28 10.04 -39.56 -0.40 -1.67 16 13 C -0.21 -3.51 10.04 -39.56 -0.40 -3.91 16 14 C -0.08 -1.35 9.97 -39.40 -0.39 -1.74 16 15 C 0.06 1.20 4.82 -83.55 -0.40 0.79 16 16 N -0.68 -13.10 5.19 -8.25 -0.04 -13.14 16 17 C 0.21 4.08 6.46 -83.68 -0.54 3.54 16 18 C -0.13 -2.62 9.01 -39.39 -0.36 -2.98 16 19 C -0.16 -2.96 9.03 -39.46 -0.36 -3.32 16 20 C 0.06 1.13 6.69 -39.23 -0.26 0.87 16 21 O -0.32 -5.33 10.14 -19.70 -0.20 -5.53 16 22 C 0.09 1.26 5.02 37.16 0.19 1.44 16 23 C -0.15 -1.69 6.05 -90.62 -0.55 -2.24 16 24 C -0.18 -1.63 10.18 -26.70 -0.27 -1.90 16 25 C -0.17 -1.56 10.25 -26.69 -0.27 -1.83 16 26 C -0.11 -1.87 9.98 -39.46 -0.39 -2.27 16 27 C -0.16 -2.82 9.89 -39.39 -0.39 -3.21 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.13 2.71 5.70 -52.49 -0.30 2.41 16 30 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.40 6.74 8.84 -40.82 -0.36 6.38 16 34 H 0.12 2.63 6.41 -52.48 -0.34 2.30 16 35 H 0.12 1.96 6.29 -52.49 -0.33 1.63 16 36 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 37 H 0.06 0.73 7.39 -51.93 -0.38 0.34 16 38 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 44 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -30.90 373.02 -9.81 -40.70 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.74 Total: 15.14 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -5.18 Total: -29.94 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.72 Total: -37.09 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.20 Total: -9.79 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.90 -9.81 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.185 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds