Wall clock time and date at job start Tue Mar 31 2020 13:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48498 * 109.46963 * 269.99641 * 3 2 1 5 5 H 1.48501 * 109.46938 * 29.99830 * 3 2 1 6 6 H 1.48497 * 109.47183 * 149.99753 * 3 2 1 7 7 C 1.38613 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00097 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.35789 * 116.99543 * 184.66637 * 9 7 2 11 11 C 1.38719 * 120.10729 * 5.54662 * 10 9 7 12 12 C 1.38174 * 120.00772 * 179.97438 * 11 10 9 13 13 C 1.38358 * 120.21747 * 0.02562 * 12 11 10 14 14 C 1.38182 * 120.20486 * 359.97438 * 13 12 11 15 15 C 1.38786 * 119.99160 * 359.97438 * 14 13 12 16 16 N 1.39761 * 120.10765 * 179.97438 * 15 14 13 17 17 C 1.39915 * 120.00266 * 253.62110 * 16 15 14 18 18 C 1.38896 * 120.02017 * 359.08188 * 17 16 15 19 19 C 1.38088 * 119.97780 * 179.76912 * 18 17 16 20 20 C 1.38719 * 120.02137 * 0.51174 * 19 18 17 21 21 O 1.35987 * 119.98005 * 179.76260 * 20 19 18 22 22 C 1.42903 * 116.99738 * 359.97438 * 21 20 19 23 23 C 1.53009 * 109.47026 * 179.97438 * 22 21 20 24 24 C 1.52996 * 117.49686 * 243.74655 * 23 22 21 25 25 C 1.53000 * 117.49904 * 175.08751 * 23 22 21 26 26 C 1.38715 * 120.04080 * 359.74511 * 20 19 18 27 27 C 1.38091 * 120.02305 * 359.97438 * 26 20 19 28 28 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99166 * 0.26085 * 11 10 9 30 30 H 1.08007 * 119.89138 * 180.02562 * 12 11 10 31 31 H 1.07993 * 119.89568 * 179.97438 * 13 12 11 32 32 H 1.07997 * 120.00367 * 180.02562 * 14 13 12 33 33 H 0.97006 * 119.99565 * 73.61682 * 16 15 14 34 34 H 1.08005 * 120.01069 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.99013 * 180.25313 * 19 18 17 36 36 H 1.08991 * 109.47163 * 299.99287 * 22 21 20 37 37 H 1.09001 * 109.47367 * 59.99760 * 22 21 20 38 38 H 1.09005 * 115.54654 * 29.41566 * 23 22 21 39 39 H 1.09002 * 117.50255 * 0.02562 * 24 23 22 40 40 H 1.09000 * 117.49825 * 145.02344 * 24 23 22 41 41 H 1.09000 * 117.49620 * 214.98374 * 25 23 22 42 42 H 1.09000 * 117.49822 * 359.97438 * 25 23 22 43 43 H 1.07996 * 119.98778 * 179.97438 * 26 20 19 44 44 H 1.07999 * 120.01244 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3349 -2.3679 0.0005 10 6 2.0711 -3.5046 0.0995 11 6 3.4402 -3.4309 0.3102 12 6 4.1872 -4.5889 0.4111 13 6 3.5743 -5.8246 0.3022 14 6 2.2111 -5.9084 0.0923 15 6 1.4524 -4.7507 -0.0093 16 7 0.0735 -4.8327 -0.2222 17 6 -0.4608 -4.5178 -1.4764 18 6 0.3767 -4.1055 -2.5048 19 6 -0.1509 -3.7996 -3.7437 20 6 -1.5182 -3.8938 -3.9582 21 8 -2.0375 -3.5877 -5.1772 22 6 -1.1169 -3.1759 -6.1896 23 6 -1.8800 -2.8769 -7.4817 24 6 -1.5808 -3.7553 -8.6982 25 6 -1.0829 -2.3085 -8.6575 26 6 -2.3560 -4.3004 -2.9302 27 6 -1.8296 -4.6123 -1.6922 28 1 -0.4850 0.8400 -0.0004 29 1 3.9215 -2.4682 0.3999 30 1 5.2530 -4.5293 0.5755 31 1 4.1632 -6.7263 0.3815 32 1 1.7360 -6.8746 0.0082 33 1 -0.5131 -5.1079 0.4998 34 1 1.4408 -4.0281 -2.3368 35 1 0.5006 -3.4828 -4.5447 36 1 -0.5928 -2.2786 -5.8610 37 1 -0.3952 -3.9726 -6.3704 38 1 -2.9045 -2.5280 -7.3526 39 1 -0.8408 -4.5465 -8.5779 40 1 -2.4085 -3.9839 -9.3696 41 1 -1.5832 -1.5857 -9.3021 42 1 -0.0150 -2.1471 -8.5104 43 1 -3.4204 -4.3731 -3.0980 44 1 -2.4820 -4.9293 -0.8921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:15 Heat of formation + Delta-G solvation = 6.167923 kcal Electronic energy + Delta-G solvation = -26687.353646 eV Core-core repulsion = 22957.098203 eV Total energy + Delta-G solvation = -3730.255442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32186 -40.69222 -39.11428 -38.16855 -37.59247 -35.54752 -34.24156 -31.96444 -31.23372 -30.45315 -28.98659 -27.80387 -27.23052 -24.19393 -23.32875 -23.21720 -23.15267 -22.02206 -21.48653 -19.79668 -19.17509 -18.93575 -18.29091 -17.46309 -16.98183 -16.58060 -16.39829 -16.29726 -15.80785 -15.64710 -15.36906 -15.21256 -14.88464 -14.70725 -14.51925 -14.23452 -13.99151 -13.83472 -13.55031 -13.33796 -13.00347 -12.78532 -12.57158 -12.48438 -12.40303 -12.33364 -12.25761 -12.14045 -11.68620 -11.38694 -11.33235 -10.99043 -10.79556 -10.54406 -9.89021 -9.64945 -8.96067 -8.44305 -7.98979 -6.10111 0.44750 0.47296 0.73023 0.80818 1.32370 1.41104 1.48496 2.15719 2.22699 2.64058 2.84349 2.87172 2.98615 3.18413 3.50385 3.75097 3.90154 3.94132 3.98482 4.05428 4.20475 4.20828 4.28326 4.34743 4.44934 4.50610 4.55422 4.62057 4.68175 4.71836 4.75618 4.92455 4.98190 5.08072 5.13043 5.13313 5.17668 5.22009 5.27136 5.43164 5.51472 5.60194 5.65559 5.76117 5.77312 6.00288 6.13943 6.50367 6.69751 6.97260 7.01727 7.83178 8.77185 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.004000 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.737827 B = 6997.749491 C = 8618.155207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.204 6.204 10 C 0.109 3.891 11 C -0.247 4.247 12 C -0.071 4.071 13 C -0.185 4.185 14 C -0.076 4.076 15 C 0.056 3.944 16 N -0.682 5.682 17 C 0.186 3.814 18 C -0.151 4.151 19 C -0.167 4.167 20 C 0.058 3.942 21 O -0.326 6.326 22 C 0.088 3.912 23 C -0.174 4.174 24 C -0.168 4.168 25 C -0.162 4.162 26 C -0.110 4.110 27 C -0.158 4.158 28 H 0.269 0.731 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.406 0.594 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.148 0.852 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -9.564 -10.171 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.215 4.215 3 Si 0.828 3.172 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.109 6.109 10 C 0.056 3.944 11 C -0.267 4.267 12 C -0.089 4.089 13 C -0.204 4.204 14 C -0.096 4.096 15 C -0.038 4.038 16 N -0.309 5.309 17 C 0.085 3.915 18 C -0.173 4.173 19 C -0.186 4.186 20 C 0.012 3.988 21 O -0.241 6.241 22 C 0.013 3.987 23 C -0.192 4.192 24 C -0.204 4.204 25 C -0.199 4.199 26 C -0.129 4.129 27 C -0.180 4.180 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.244 0.756 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.166 0.834 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.275 -9.358 -10.265 13.893 hybrid contribution 0.418 1.211 0.587 1.410 sum 0.693 -8.147 -9.678 12.669 Atomic orbital electron populations 1.70214 1.07762 1.28317 1.48424 1.26394 0.96676 1.02292 0.96099 0.84729 0.78012 0.75370 0.79040 1.19229 1.19767 1.17643 1.21725 0.92256 0.81854 1.53004 0.88644 1.84031 1.34678 1.11754 1.80448 1.20374 0.91707 0.88032 0.94278 1.21268 0.93426 1.00233 1.11802 1.21210 1.00202 0.91402 0.96130 1.21055 0.94015 0.98072 1.07211 1.21277 0.94097 0.96481 0.97753 1.16968 0.84586 0.90136 1.12156 1.41416 1.04095 1.75279 1.10090 1.17934 0.92649 0.95237 0.85665 1.20375 0.98915 1.04851 0.93193 1.21029 0.94486 1.05091 0.98037 1.18781 0.91685 1.02191 0.86156 1.85954 1.36894 1.82816 1.18479 1.22348 0.91386 0.98911 0.86019 1.22073 1.01191 1.07749 0.88166 1.23197 1.03937 0.94027 0.99288 1.23110 1.00572 0.97303 0.98939 1.20323 1.00052 1.01822 0.90751 1.20592 0.92450 1.06869 0.98082 0.92229 0.86525 0.83761 0.82939 0.83800 0.75649 0.88338 0.85247 0.92913 0.91552 0.87132 0.88270 0.87129 0.86813 0.88200 0.83432 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.67 21.61 0.30 -55.60 16 2 C -0.02 -0.92 5.49 84.82 0.47 -0.45 16 3 Si 1.01 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.41 -23.71 9.45 67.91 0.64 -23.07 16 8 H 0.10 5.10 5.28 -2.91 -0.02 5.08 16 9 O -0.20 -11.84 9.26 -22.95 -0.21 -12.05 16 10 C 0.11 5.25 5.61 22.70 0.13 5.38 16 11 C -0.25 -10.47 9.13 22.37 0.20 -10.27 16 12 C -0.07 -2.32 10.04 22.28 0.22 -2.10 16 13 C -0.18 -5.37 10.04 22.28 0.22 -5.14 16 14 C -0.08 -2.48 9.97 22.39 0.22 -2.25 16 15 C 0.06 2.27 4.82 38.32 0.18 2.45 16 16 N -0.68 -26.62 5.19 -180.00 -0.93 -27.55 16 17 C 0.19 7.59 6.46 38.17 0.25 7.84 16 18 C -0.15 -6.50 9.01 22.39 0.20 -6.30 16 19 C -0.17 -6.51 9.03 22.35 0.20 -6.30 16 20 C 0.06 2.12 6.69 22.50 0.15 2.27 16 21 O -0.33 -10.93 10.14 -93.40 -0.95 -11.88 16 22 C 0.09 2.41 5.02 71.99 0.36 2.77 16 23 C -0.17 -3.75 6.05 -10.79 -0.07 -3.82 16 24 C -0.17 -2.77 10.18 30.62 0.31 -2.46 16 25 C -0.16 -2.68 10.25 30.62 0.31 -2.37 16 26 C -0.11 -3.84 9.98 22.35 0.22 -3.61 16 27 C -0.16 -5.62 9.89 22.39 0.22 -5.40 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 29 H 0.12 5.10 5.70 -2.91 -0.02 5.08 16 30 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 33 H 0.41 13.87 8.84 -92.70 -0.82 13.05 16 34 H 0.10 4.58 6.41 -2.91 -0.02 4.56 16 35 H 0.13 4.51 6.29 -2.91 -0.02 4.49 16 36 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 37 H 0.07 1.66 7.39 -2.39 -0.02 1.64 16 38 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.10 1.57 8.03 -2.39 -0.02 1.56 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -72.10 373.02 4.90 -67.20 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: 0.21 Total: 47.41 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 4.46 Total: -52.84 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -0.64 Total: -83.16 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -1.16 Total: -23.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -72.10 4.90 -67.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.364 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds