Wall clock time and date at job start Tue Mar 31 2020 14:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47198 * 354.66659 * 3 2 1 5 5 H 1.48499 * 109.47201 * 114.66555 * 3 2 1 6 6 H 1.48502 * 109.47148 * 234.66923 * 3 2 1 7 7 C 1.38808 * 119.99981 * 180.27392 * 2 1 3 8 8 H 1.07995 * 119.99752 * 27.75698 * 7 2 1 9 9 N 1.36937 * 119.99970 * 207.75453 * 7 2 1 10 10 C 1.47025 * 125.64771 * 356.45871 * 9 7 2 11 11 C 1.54325 * 107.27120 * 181.02228 * 10 9 7 12 12 C 1.55157 * 102.94246 * 22.19357 * 11 10 9 13 13 H 1.09003 * 111.00542 * 82.61000 * 12 11 10 14 14 O 1.42903 * 111.00368 * 206.42759 * 12 11 10 15 15 C 1.35990 * 116.99806 * 201.96861 * 14 12 11 16 16 C 1.38567 * 120.07230 * 358.25778 * 15 14 12 17 17 C 1.38249 * 119.99889 * 179.72364 * 16 15 14 18 18 C 1.38258 * 120.14968 * 0.55302 * 17 16 15 19 19 C 1.38230 * 120.15233 * 359.72047 * 18 17 16 20 20 C 1.38595 * 119.99553 * 0.02562 * 19 18 17 21 21 O 1.35973 * 120.07671 * 180.02562 * 20 19 18 22 22 C 1.35873 * 117.99793 * 259.23076 * 21 20 19 23 23 C 1.38760 * 120.06029 * 4.95920 * 22 21 20 24 24 C 1.38138 * 119.93983 * 179.72633 * 23 22 21 25 25 C 1.38268 * 120.06238 * 0.54498 * 24 23 22 26 26 C 1.38280 * 120.11326 * 359.72950 * 25 24 23 27 27 C 1.38134 * 120.06021 * 359.97438 * 26 25 24 28 28 C 1.47426 * 125.65024 * 176.15088 * 9 7 2 29 29 H 0.96996 * 119.99970 * 185.05101 * 1 2 3 30 30 H 1.08999 * 109.88366 * 300.44222 * 10 9 7 31 31 H 1.09006 * 109.88214 * 61.45228 * 10 9 7 32 32 H 1.08996 * 110.72246 * 140.55365 * 11 10 9 33 33 H 1.09002 * 110.72091 * 263.65353 * 11 10 9 34 34 H 1.08001 * 120.00509 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.92412 * 180.25273 * 17 16 15 36 36 H 1.08003 * 119.92330 * 179.75046 * 18 17 16 37 37 H 1.08001 * 120.00301 * 180.02562 * 19 18 17 38 38 H 1.07998 * 120.02858 * 359.97421 * 23 22 21 39 39 H 1.08007 * 119.96988 * 180.27373 * 24 23 22 40 40 H 1.07990 * 119.94809 * 179.74534 * 25 24 23 41 41 H 1.08001 * 119.97222 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.02766 * 180.02562 * 27 26 25 43 43 H 1.09002 * 110.36541 * 274.74983 * 28 9 7 44 44 H 1.08997 * 110.36389 * 37.07020 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2904 2.7434 -0.1301 5 1 3.0037 1.7543 1.2723 6 1 3.1989 1.6416 -1.1422 7 6 2.0102 -1.2021 -0.0057 8 1 1.5634 -2.0814 -0.4455 9 7 3.2615 -1.2730 0.5462 10 6 4.0147 -0.1430 1.1095 11 6 5.3755 -0.6922 1.5874 12 6 5.5384 -1.9905 0.7536 13 1 5.9305 -1.7705 -0.2394 14 8 6.3698 -2.9341 1.4322 15 6 6.9697 -3.8880 0.6710 16 6 6.7339 -3.9371 -0.6936 17 6 7.3489 -4.9040 -1.4670 18 6 8.1909 -5.8305 -0.8804 19 6 8.4261 -5.7908 0.4812 20 6 7.8169 -4.8209 1.2616 21 8 8.0475 -4.7800 2.6010 22 6 7.1040 -5.3032 3.4269 23 6 5.9965 -5.9492 2.8961 24 6 5.0417 -6.4852 3.7382 25 6 5.1829 -6.3686 5.1087 26 6 6.2827 -5.7204 5.6402 27 6 7.2436 -5.1880 4.8028 28 6 4.0737 -2.4960 0.6797 29 1 -0.4850 -0.8367 0.0740 30 1 4.1700 0.6174 0.3442 31 1 3.4686 0.2841 1.9507 32 1 6.1760 0.0128 1.3636 33 1 5.3479 -0.9164 2.6538 34 1 6.0728 -3.2176 -1.1537 35 1 7.1675 -4.9386 -2.5310 36 1 8.6663 -6.5868 -1.4874 37 1 9.0846 -6.5155 0.9368 38 1 5.8833 -6.0363 1.8256 39 1 4.1817 -6.9919 3.3256 40 1 4.4333 -6.7847 5.7653 41 1 6.3909 -5.6311 6.7111 42 1 8.1025 -4.6822 5.2184 43 1 3.8078 -3.0303 1.5919 44 1 3.9380 -3.1384 -0.1903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225508979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:14 Heat of formation + Delta-G solvation = 33.162040 kcal Electronic energy + Delta-G solvation = -27519.486984 eV Core-core repulsion = 23790.402094 eV Total energy + Delta-G solvation = -3729.084890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16425 -39.61119 -38.28264 -37.21456 -36.45274 -32.56702 -31.27294 -30.76949 -30.32134 -29.67257 -29.08660 -28.15211 -24.27158 -23.74706 -22.79172 -22.61860 -21.67474 -20.85712 -20.29773 -18.99395 -17.93312 -17.54601 -16.83836 -16.45910 -15.94072 -15.66384 -15.41182 -14.81843 -14.69366 -14.37580 -14.22822 -13.92694 -13.61708 -13.46625 -13.41170 -13.34133 -12.84526 -12.59423 -12.29899 -12.13075 -11.98125 -11.70279 -11.63644 -11.43219 -11.25793 -11.05814 -10.97633 -10.59373 -10.43274 -9.99872 -9.65791 -9.08303 -9.07170 -9.03372 -8.53483 -8.36015 -8.16174 -7.17070 -6.40389 -3.22830 0.91581 1.20760 1.31600 1.40572 3.01527 3.16727 3.38819 3.48205 3.64239 3.68347 3.76043 4.60091 4.64618 4.71944 4.80894 4.85079 4.87164 4.91728 5.01340 5.10600 5.13431 5.15594 5.23511 5.29470 5.33645 5.36061 5.44168 5.53051 5.69805 5.75197 5.86131 5.94900 6.04614 6.08368 6.10381 6.26058 6.27612 6.31225 6.36998 6.40947 6.44811 6.48703 6.52302 6.69750 6.80471 7.30460 7.57787 7.64727 8.26721 8.96467 9.50716 10.15800 11.08378 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003973 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.108087 B = 7046.228917 C = 8168.271805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.012 4.012 3 Si 1.044 2.956 4 H -0.298 1.298 5 H -0.278 1.278 6 H -0.297 1.297 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.117 3.883 11 C -0.120 4.120 12 C 0.059 3.941 13 H 0.085 0.915 14 O -0.291 6.291 15 C 0.133 3.867 16 C -0.200 4.200 17 C -0.073 4.073 18 C -0.153 4.153 19 C -0.086 4.086 20 C 0.041 3.959 21 O -0.247 6.247 22 C 0.130 3.870 23 C -0.187 4.187 24 C -0.081 4.081 25 C -0.157 4.157 26 C -0.085 4.085 27 C -0.149 4.149 28 C 0.125 3.875 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.037 0.963 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.972 -13.166 4.469 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.214 4.214 3 Si 0.877 3.123 4 H -0.226 1.226 5 H -0.205 1.205 6 H -0.225 1.225 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.336 5.336 10 C -0.008 4.008 11 C -0.158 4.158 12 C 0.003 3.997 13 H 0.103 0.897 14 O -0.203 6.203 15 C 0.086 3.914 16 C -0.219 4.219 17 C -0.091 4.091 18 C -0.171 4.171 19 C -0.104 4.104 20 C -0.002 4.002 21 O -0.159 6.159 22 C 0.087 3.913 23 C -0.205 4.205 24 C -0.099 4.099 25 C -0.175 4.175 26 C -0.103 4.103 27 C -0.167 4.167 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.055 0.945 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.842 -11.393 4.637 21.671 hybrid contribution -0.004 -1.608 -0.469 1.675 sum 17.838 -13.001 4.168 22.463 Atomic orbital electron populations 1.70911 1.06146 1.29303 1.48611 1.25644 0.95976 1.00853 0.98890 0.84287 0.74387 0.76931 0.76742 1.22572 1.20490 1.22546 1.20032 0.88924 0.98978 1.38369 0.90166 1.44674 1.16682 1.01516 1.70710 1.22016 0.90142 0.91688 0.96960 1.22669 0.98208 0.94243 1.00654 1.24031 0.90904 0.88582 0.96230 0.89680 1.86203 1.59568 1.38762 1.35721 1.19458 0.91661 0.89787 0.90516 1.21404 1.05170 1.02910 0.92412 1.21081 0.94696 0.93330 1.00034 1.20912 1.01257 1.00878 0.94060 1.21083 0.99287 0.96014 0.94051 1.17906 1.02528 0.97640 0.82167 1.84418 1.42131 1.75700 1.13662 1.19222 0.88625 0.93320 0.90155 1.21255 0.95738 1.03040 1.00504 1.20966 0.97825 0.97714 0.93406 1.21067 0.98884 1.02351 0.95174 1.20925 0.93405 0.96616 0.99400 1.20386 1.01733 1.04721 0.89880 1.21964 0.87815 0.90825 0.99566 0.92600 0.95117 0.92793 0.90581 0.90007 0.84141 0.85217 0.85199 0.84681 0.85820 0.85837 0.85971 0.85436 0.85296 0.94505 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.70 55.49 0.76 -27.55 16 2 C -0.01 -0.36 5.47 -17.43 -0.10 -0.46 16 3 Si 1.04 25.93 24.73 -169.99 -4.20 21.72 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.28 -6.26 5.09 56.52 0.29 -5.98 16 6 H -0.30 -7.12 7.07 56.52 0.40 -6.72 16 7 C -0.34 -9.61 10.46 -15.06 -0.16 -9.77 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 N -0.61 -14.92 3.38 -169.93 -0.57 -15.49 16 10 C 0.12 2.54 4.58 -3.06 -0.01 2.53 16 11 C -0.12 -2.10 6.68 -24.90 -0.17 -2.26 16 12 C 0.06 1.03 2.83 -24.46 -0.07 0.96 16 13 H 0.09 1.38 6.16 -51.93 -0.32 1.06 16 14 O -0.29 -4.92 9.65 -34.20 -0.33 -5.25 16 15 C 0.13 1.99 6.10 -39.11 -0.24 1.75 16 16 C -0.20 -2.66 8.98 -39.46 -0.35 -3.01 16 17 C -0.07 -0.79 10.04 -39.57 -0.40 -1.18 16 18 C -0.15 -1.49 10.04 -39.58 -0.40 -1.89 16 19 C -0.09 -0.96 9.98 -39.45 -0.39 -1.35 16 20 C 0.04 0.57 4.20 -39.10 -0.16 0.40 16 21 O -0.25 -3.68 9.77 -18.26 -0.18 -3.86 16 22 C 0.13 1.85 6.54 -39.19 -0.26 1.59 16 23 C -0.19 -2.61 9.04 -39.43 -0.36 -2.96 16 24 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 25 C -0.16 -1.77 10.04 -39.55 -0.40 -2.17 16 26 C -0.09 -0.94 10.04 -39.60 -0.40 -1.34 16 27 C -0.15 -1.86 9.99 -39.42 -0.39 -2.26 16 28 C 0.13 2.58 6.89 -2.41 -0.02 2.56 16 29 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 30 H 0.03 0.69 4.68 -51.93 -0.24 0.44 16 31 H 0.05 1.24 6.41 -51.93 -0.33 0.91 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.14 1.90 5.74 -52.49 -0.30 1.60 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.75 6.58 -52.49 -0.35 1.40 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.93 7.96 -51.93 -0.41 0.52 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -32.62 357.60 -9.68 -42.30 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.87 Total: 3.01 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.66 Total: -20.27 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.19 Total: -43.05 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.51 Total: -9.10 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.20 Total: 21.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.62 -9.68 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225508979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.459 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds