Wall clock time and date at job start Tue Mar 31 2020 14:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47198 * 354.66659 * 3 2 1 5 5 H 1.48499 * 109.47201 * 114.66555 * 3 2 1 6 6 H 1.48502 * 109.47148 * 234.66923 * 3 2 1 7 7 C 1.38808 * 119.99981 * 180.27392 * 2 1 3 8 8 H 1.07995 * 119.99752 * 27.75698 * 7 2 1 9 9 N 1.36937 * 119.99970 * 207.75453 * 7 2 1 10 10 C 1.47025 * 125.64771 * 356.45871 * 9 7 2 11 11 C 1.54325 * 107.27120 * 181.02228 * 10 9 7 12 12 C 1.55157 * 102.94246 * 22.19357 * 11 10 9 13 13 H 1.09003 * 111.00542 * 82.61000 * 12 11 10 14 14 O 1.42903 * 111.00368 * 206.42759 * 12 11 10 15 15 C 1.35990 * 116.99806 * 201.96861 * 14 12 11 16 16 C 1.38567 * 120.07230 * 358.25778 * 15 14 12 17 17 C 1.38249 * 119.99889 * 179.72364 * 16 15 14 18 18 C 1.38258 * 120.14968 * 0.55302 * 17 16 15 19 19 C 1.38230 * 120.15233 * 359.72047 * 18 17 16 20 20 C 1.38595 * 119.99553 * 0.02562 * 19 18 17 21 21 O 1.35973 * 120.07671 * 180.02562 * 20 19 18 22 22 C 1.35873 * 117.99793 * 259.23076 * 21 20 19 23 23 C 1.38760 * 120.06029 * 4.95920 * 22 21 20 24 24 C 1.38138 * 119.93983 * 179.72633 * 23 22 21 25 25 C 1.38268 * 120.06238 * 0.54498 * 24 23 22 26 26 C 1.38280 * 120.11326 * 359.72950 * 25 24 23 27 27 C 1.38134 * 120.06021 * 359.97438 * 26 25 24 28 28 C 1.47426 * 125.65024 * 176.15088 * 9 7 2 29 29 H 0.96996 * 119.99970 * 185.05101 * 1 2 3 30 30 H 1.08999 * 109.88366 * 300.44222 * 10 9 7 31 31 H 1.09006 * 109.88214 * 61.45228 * 10 9 7 32 32 H 1.08996 * 110.72246 * 140.55365 * 11 10 9 33 33 H 1.09002 * 110.72091 * 263.65353 * 11 10 9 34 34 H 1.08001 * 120.00509 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.92412 * 180.25273 * 17 16 15 36 36 H 1.08003 * 119.92330 * 179.75046 * 18 17 16 37 37 H 1.08001 * 120.00301 * 180.02562 * 19 18 17 38 38 H 1.07998 * 120.02858 * 359.97421 * 23 22 21 39 39 H 1.08007 * 119.96988 * 180.27373 * 24 23 22 40 40 H 1.07990 * 119.94809 * 179.74534 * 25 24 23 41 41 H 1.08001 * 119.97222 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.02766 * 180.02562 * 27 26 25 43 43 H 1.09002 * 110.36541 * 274.74983 * 28 9 7 44 44 H 1.08997 * 110.36389 * 37.07020 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2904 2.7434 -0.1301 5 1 3.0037 1.7543 1.2723 6 1 3.1989 1.6416 -1.1422 7 6 2.0102 -1.2021 -0.0057 8 1 1.5634 -2.0814 -0.4455 9 7 3.2615 -1.2730 0.5462 10 6 4.0147 -0.1430 1.1095 11 6 5.3755 -0.6922 1.5874 12 6 5.5384 -1.9905 0.7536 13 1 5.9305 -1.7705 -0.2394 14 8 6.3698 -2.9341 1.4322 15 6 6.9697 -3.8880 0.6710 16 6 6.7339 -3.9371 -0.6936 17 6 7.3489 -4.9040 -1.4670 18 6 8.1909 -5.8305 -0.8804 19 6 8.4261 -5.7908 0.4812 20 6 7.8169 -4.8209 1.2616 21 8 8.0475 -4.7800 2.6010 22 6 7.1040 -5.3032 3.4269 23 6 5.9965 -5.9492 2.8961 24 6 5.0417 -6.4852 3.7382 25 6 5.1829 -6.3686 5.1087 26 6 6.2827 -5.7204 5.6402 27 6 7.2436 -5.1880 4.8028 28 6 4.0737 -2.4960 0.6797 29 1 -0.4850 -0.8367 0.0740 30 1 4.1700 0.6174 0.3442 31 1 3.4686 0.2841 1.9507 32 1 6.1760 0.0128 1.3636 33 1 5.3479 -0.9164 2.6538 34 1 6.0728 -3.2176 -1.1537 35 1 7.1675 -4.9386 -2.5310 36 1 8.6663 -6.5868 -1.4874 37 1 9.0846 -6.5155 0.9368 38 1 5.8833 -6.0363 1.8256 39 1 4.1817 -6.9919 3.3256 40 1 4.4333 -6.7847 5.7653 41 1 6.3909 -5.6311 6.7111 42 1 8.1025 -4.6822 5.2184 43 1 3.8078 -3.0303 1.5919 44 1 3.9380 -3.1384 -0.1903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225508979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:14 Heat of formation + Delta-G solvation = 14.903323 kcal Electronic energy + Delta-G solvation = -27520.278741 eV Core-core repulsion = 23790.402094 eV Total energy + Delta-G solvation = -3729.876647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.18390 -40.77245 -39.45764 -38.32409 -37.77070 -34.64426 -32.22613 -31.76604 -31.68547 -30.91823 -30.29243 -29.63706 -26.08973 -24.71660 -24.00175 -23.56812 -22.83413 -22.41117 -21.75010 -20.03864 -19.63315 -18.99406 -17.82504 -17.57227 -17.30347 -16.87952 -16.56565 -16.11483 -15.75359 -15.55655 -15.53223 -15.28862 -15.22275 -14.78650 -14.59674 -14.38563 -14.15406 -14.09780 -13.75135 -13.20191 -13.13998 -13.04621 -13.02956 -12.71104 -12.54314 -12.37892 -12.03678 -11.91484 -11.80834 -11.79600 -11.52643 -11.01074 -10.64039 -10.00799 -9.97552 -9.36749 -9.24953 -9.15447 -8.72168 -5.47232 -0.00754 0.26534 0.37121 0.45233 1.41768 1.50440 1.71077 1.89413 2.15644 2.54861 2.71593 2.81530 2.94597 3.31371 3.43230 3.64610 3.68949 3.82674 3.87944 3.90967 3.95527 4.09185 4.18262 4.23626 4.29673 4.33425 4.35676 4.46452 4.52780 4.58536 4.64161 4.75230 4.77959 4.85302 4.87145 5.03808 5.05665 5.15542 5.23004 5.32723 5.40811 5.44914 5.46260 5.55955 5.63749 5.87991 6.01512 6.18408 6.61055 6.74378 7.36900 8.02176 8.77645 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003973 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.108087 B = 7046.228917 C = 8168.271805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.067 4.067 3 Si 1.085 2.915 4 H -0.309 1.309 5 H -0.239 1.239 6 H -0.280 1.280 7 C -0.332 4.332 8 H 0.048 0.952 9 N -0.626 5.626 10 C 0.108 3.892 11 C -0.110 4.110 12 C 0.078 3.922 13 H 0.100 0.900 14 O -0.304 6.304 15 C 0.103 3.897 16 C -0.212 4.212 17 C -0.072 4.072 18 C -0.137 4.137 19 C -0.086 4.086 20 C 0.026 3.974 21 O -0.261 6.261 22 C 0.109 3.891 23 C -0.203 4.203 24 C -0.096 4.096 25 C -0.159 4.159 26 C -0.082 4.082 27 C -0.160 4.160 28 C 0.125 3.875 29 H 0.250 0.750 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.021 0.979 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.011 -13.539 4.846 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.262 4.262 3 Si 0.910 3.090 4 H -0.237 1.237 5 H -0.164 1.164 6 H -0.207 1.207 7 C -0.459 4.459 8 H 0.066 0.934 9 N -0.355 5.355 10 C -0.016 4.016 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.117 0.883 14 O -0.216 6.216 15 C 0.057 3.943 16 C -0.230 4.230 17 C -0.090 4.090 18 C -0.155 4.155 19 C -0.105 4.105 20 C -0.017 4.017 21 O -0.173 6.173 22 C 0.067 3.933 23 C -0.222 4.222 24 C -0.114 4.114 25 C -0.177 4.177 26 C -0.100 4.100 27 C -0.178 4.178 28 C -0.001 4.001 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.173 0.827 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.039 0.961 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.932 -11.807 5.026 24.552 hybrid contribution -0.942 -1.733 -0.602 2.063 sum 19.990 -13.541 4.423 24.546 Atomic orbital electron populations 1.71024 1.07399 1.28505 1.51809 1.26987 0.95979 1.04420 0.98774 0.83827 0.73731 0.72306 0.79104 1.23741 1.16405 1.20690 1.19909 0.90773 0.97840 1.37425 0.93402 1.44678 1.16303 1.03955 1.70539 1.22151 0.91846 0.91184 0.96444 1.22636 0.96680 0.94776 1.00692 1.23683 0.88667 0.88475 0.97139 0.88251 1.86166 1.59774 1.39445 1.36229 1.19712 0.93026 0.90345 0.91220 1.21474 1.05671 1.03811 0.92063 1.21443 0.93919 0.92388 1.01232 1.21353 0.99804 1.00643 0.93676 1.21412 0.98917 0.95510 0.94619 1.18233 1.03062 0.98277 0.82151 1.84380 1.42519 1.76133 1.14258 1.19489 0.88892 0.94078 0.90878 1.21270 0.96540 1.04168 1.00227 1.21232 0.97972 0.97932 0.94220 1.21431 0.99525 1.01843 0.94945 1.21336 0.92507 0.95267 1.00896 1.20716 1.02680 1.04966 0.89475 1.21982 0.90099 0.89522 0.98495 0.94139 0.94428 0.93940 0.86969 0.89689 0.84916 0.82529 0.81498 0.82700 0.86936 0.84840 0.83493 0.82274 0.84040 0.96117 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.70 21.65 0.30 -60.56 16 2 C -0.07 -3.98 5.47 84.86 0.46 -3.52 16 3 Si 1.08 51.94 24.73 68.60 1.70 53.63 16 4 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.24 -9.98 5.09 99.48 0.51 -9.48 16 6 H -0.28 -12.54 7.07 99.48 0.70 -11.84 16 7 C -0.33 -19.52 10.46 84.03 0.88 -18.64 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 9 N -0.63 -30.98 3.38 -691.53 -2.34 -33.32 16 10 C 0.11 4.52 4.58 86.73 0.40 4.91 16 11 C -0.11 -3.61 6.68 31.78 0.21 -3.40 16 12 C 0.08 2.62 2.83 32.06 0.09 2.71 16 13 H 0.10 3.07 6.16 -2.39 -0.01 3.06 16 14 O -0.30 -10.17 9.65 -79.57 -0.77 -10.93 16 15 C 0.10 3.04 6.10 22.57 0.14 3.18 16 16 C -0.21 -5.41 8.98 22.35 0.20 -5.21 16 17 C -0.07 -1.36 10.04 22.28 0.22 -1.14 16 18 C -0.14 -2.23 10.04 22.27 0.22 -2.01 16 19 C -0.09 -1.75 9.98 22.35 0.22 -1.53 16 20 C 0.03 0.70 4.20 22.58 0.09 0.79 16 21 O -0.26 -7.71 9.77 -22.53 -0.22 -7.93 16 22 C 0.11 3.11 6.54 22.52 0.15 3.26 16 23 C -0.20 -5.76 9.04 22.37 0.20 -5.56 16 24 C -0.10 -2.37 10.04 22.25 0.22 -2.15 16 25 C -0.16 -3.37 10.04 22.29 0.22 -3.15 16 26 C -0.08 -1.66 10.04 22.25 0.22 -1.44 16 27 C -0.16 -3.85 9.99 22.37 0.22 -3.63 16 28 C 0.13 5.25 6.89 86.93 0.60 5.85 16 29 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 30 H 0.04 1.56 4.68 -2.39 -0.01 1.55 16 31 H 0.04 1.88 6.41 -2.38 -0.02 1.86 16 32 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.13 3.52 5.74 -2.91 -0.02 3.51 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.11 3.32 6.58 -2.91 -0.02 3.30 16 39 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.15 2.30 8.06 -2.92 -0.02 2.28 16 41 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 Total: -1.00 -74.05 357.60 4.42 -69.62 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.77 Total: 20.16 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.99 Total: -30.67 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -2.04 Total: -93.88 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.99 Total: -18.87 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 1.70 Total: 53.63 kcal Total: -74.05 4.42 -69.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225508979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.527 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds