Wall clock time and date at job start Tue Mar 31 2020 14:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47087 * 240.00094 * 3 2 1 5 5 H 1.48498 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47222 * 120.00311 * 3 2 1 7 7 C 1.40068 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99962 * 168.27761 * 7 2 1 9 9 C 1.40892 * 120.00446 * 348.28160 * 7 2 1 10 10 C 1.41121 * 120.71440 * 331.61352 * 9 7 2 11 11 C 1.36881 * 118.39391 * 179.97438 * 10 9 7 12 12 C 1.38871 * 119.80110 * 0.02562 * 11 10 9 13 13 N 1.31743 * 121.49857 * 359.71429 * 12 11 10 14 14 C 1.32578 * 121.72363 * 0.57326 * 13 12 11 15 15 C 1.47823 * 119.99201 * 179.70868 * 14 13 12 16 16 C 1.39715 * 120.12814 * 136.10794 * 15 14 13 17 17 C 1.37918 * 119.96391 * 180.02562 * 16 15 14 18 18 C 1.38332 * 120.21213 * 359.97438 * 17 16 15 19 19 C 1.38874 * 120.24728 * 359.97438 * 18 17 16 20 20 O 1.35904 * 119.97879 * 180.02562 * 19 18 17 21 21 C 1.42906 * 117.00158 * 359.97438 * 20 19 18 22 22 H 1.09008 * 109.47449 * 54.97898 * 21 20 19 23 23 C 1.53092 * 109.47703 * 174.99928 * 21 20 19 24 24 C 1.53179 * 109.15829 * 177.59696 * 23 21 20 25 25 C 1.53181 * 109.03519 * 303.01628 * 24 23 21 26 26 C 1.53100 * 109.16063 * 56.98428 * 25 24 23 27 27 O 1.42894 * 109.47979 * 294.94648 * 21 20 19 28 28 C 1.38442 * 120.03549 * 0.27838 * 19 18 17 29 29 H 0.97002 * 119.99577 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.80332 * 359.97438 * 10 9 7 31 31 H 1.08004 * 120.10214 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.24967 * 180.02562 * 12 11 10 33 33 H 1.08002 * 120.01701 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.89975 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.87720 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.52097 * 297.50015 * 23 21 20 37 37 H 1.08993 * 109.52448 * 57.69133 * 23 21 20 38 38 H 1.09001 * 109.54768 * 62.88687 * 24 23 21 39 39 H 1.09001 * 109.54136 * 183.15577 * 24 23 21 40 40 H 1.08995 * 109.52555 * 297.07995 * 25 24 23 41 41 H 1.09001 * 109.57188 * 176.91871 * 25 24 23 42 42 H 1.08997 * 109.47920 * 182.40393 * 26 25 24 43 43 H 1.09000 * 109.48756 * 62.37867 * 26 25 24 44 44 H 1.07999 * 120.10212 * 179.72210 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.0955 1.6963 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2124 7 6 2.0080 -1.2131 -0.0005 8 1 3.0711 -1.2228 -0.1906 9 6 1.3255 -2.4206 0.2467 10 6 0.1631 -2.4409 1.0467 11 6 -0.4625 -3.6403 1.2555 12 6 0.0530 -4.7963 0.6841 13 7 1.1358 -4.7697 -0.0659 14 6 1.7922 -3.6424 -0.3028 15 6 3.0069 -3.6576 -1.1450 16 6 3.1976 -2.6739 -2.1186 17 6 4.3320 -2.6917 -2.9028 18 6 5.2833 -3.6807 -2.7286 19 6 5.1032 -4.6622 -1.7627 20 8 6.0416 -5.6310 -1.5957 21 6 7.1871 -5.5786 -2.4486 22 1 7.6598 -4.6001 -2.3625 23 6 8.1826 -6.6650 -2.0335 24 6 9.3796 -6.6417 -2.9891 25 6 8.8772 -6.8309 -4.4238 26 6 7.8547 -5.7380 -4.7465 27 8 6.7837 -5.7958 -3.8021 28 6 3.9659 -4.6572 -0.9733 29 1 -0.4849 0.8401 0.0004 30 1 -0.2235 -1.5320 1.4836 31 1 -1.3543 -3.6876 1.8628 32 1 -0.4480 -5.7378 0.8544 33 1 2.4571 -1.9001 -2.2571 34 1 4.4781 -1.9311 -3.6555 35 1 6.1698 -3.6892 -3.3454 36 1 8.5250 -6.4758 -1.0162 37 1 7.6981 -7.6402 -2.0803 38 1 9.8939 -5.6842 -2.9062 39 1 10.0658 -7.4491 -2.7337 40 1 8.4066 -7.8094 -4.5189 41 1 9.7159 -6.7611 -5.1165 42 1 7.4621 -5.8929 -5.7514 43 1 8.3362 -4.7617 -4.6908 44 1 3.8226 -5.4225 -0.2249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241209049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:09 Heat of formation + Delta-G solvation = -44.844965 kcal Electronic energy + Delta-G solvation = -26873.574996 eV Core-core repulsion = 23141.107469 eV Total energy + Delta-G solvation = -3732.467527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29154 -38.92697 -38.07903 -36.37076 -34.17358 -33.96535 -31.60553 -31.04624 -30.58630 -29.31236 -28.21512 -25.75647 -25.10778 -23.88361 -22.66802 -21.84156 -21.19078 -20.60004 -20.09445 -17.77784 -17.40612 -16.85686 -16.57743 -15.70965 -15.31461 -15.13630 -15.07933 -14.57675 -14.51789 -14.19400 -13.87823 -13.62868 -13.30590 -13.07651 -12.96054 -12.81383 -12.58576 -12.25026 -11.92662 -11.62368 -11.54887 -11.48978 -11.39084 -11.34861 -11.08179 -10.98754 -10.87120 -10.65280 -10.51187 -10.31885 -9.78640 -9.69592 -9.43634 -8.56436 -8.14218 -8.07075 -7.61677 -7.31467 -6.89392 -4.53989 1.84099 2.19077 2.64684 2.94523 2.97990 3.01328 3.11247 3.17950 3.78302 3.80079 4.47523 4.48997 4.49952 4.59243 4.61592 4.73297 4.80463 5.09255 5.26574 5.36787 5.43887 5.45786 5.50958 5.58455 5.60415 5.68096 5.74261 5.75824 5.95589 6.15784 6.19752 6.24238 6.30195 6.34801 6.65902 6.78648 6.84097 6.91367 6.99193 7.03140 7.09317 7.25834 7.41759 7.50282 7.70062 7.82691 7.88046 7.95548 8.36378 8.58185 8.65300 9.56849 9.98712 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003268 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.214255 B = 8566.214781 C = 9784.571146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.087 3.913 10 C -0.128 4.128 11 C -0.150 4.150 12 C -0.031 4.031 13 N -0.451 5.451 14 C 0.012 3.988 15 C 0.057 3.943 16 C -0.123 4.123 17 C -0.098 4.098 18 C -0.206 4.206 19 C 0.111 3.889 20 O -0.300 6.300 21 C 0.258 3.742 22 H 0.061 0.939 23 C -0.141 4.141 24 C -0.119 4.119 25 C -0.160 4.160 26 C 0.069 3.931 27 O -0.394 6.394 28 C -0.135 4.135 29 H 0.285 0.715 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.721 -5.071 -6.155 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.082 3.918 10 C -0.153 4.153 11 C -0.170 4.170 12 C -0.192 4.192 13 N -0.158 5.158 14 C -0.126 4.126 15 C 0.056 3.944 16 C -0.142 4.142 17 C -0.116 4.116 18 C -0.225 4.225 19 C 0.068 3.932 20 O -0.215 6.215 21 C 0.163 3.837 22 H 0.078 0.922 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.198 4.198 26 C -0.008 4.008 27 O -0.315 6.315 28 C -0.155 4.155 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.611 -5.859 -6.428 17.004 hybrid contribution 0.152 1.709 0.291 1.740 sum 14.764 -4.149 -6.137 16.518 Atomic orbital electron populations 1.69739 1.07669 1.29864 1.34123 1.26004 0.94836 1.01557 0.92178 0.86279 0.80108 0.79652 0.80404 1.18521 1.20184 1.18611 1.19609 0.96716 0.89994 1.40482 0.89254 1.18322 0.91816 0.92522 0.89090 1.21431 0.97808 0.96849 0.99253 1.21454 0.99782 0.94593 1.01170 1.21683 0.97004 0.96768 1.03726 1.67040 1.06877 1.29597 1.12323 1.19454 0.98529 0.89850 1.04746 1.18178 0.91448 0.92145 0.92616 1.21403 0.98110 0.99571 0.95146 1.20746 0.94089 0.97662 0.99126 1.21067 1.01959 0.97930 1.01589 1.18720 0.89520 0.88497 0.96446 1.86189 1.31043 1.50128 1.54159 1.22989 0.84519 0.97474 0.78686 0.92201 1.22031 0.95205 1.00105 1.00536 1.21583 0.97004 1.02751 0.94295 1.22261 0.99602 1.00749 0.97201 1.22529 0.87993 0.97545 0.92707 1.87963 1.34222 1.92786 1.16529 1.20490 0.91926 1.01189 1.01860 0.90378 0.85439 0.88265 0.86099 0.84664 0.86649 0.86551 0.89792 0.89828 0.91482 0.90585 0.90660 0.90528 0.88393 0.93020 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.13 10.91 55.55 0.61 -18.53 16 2 C 0.07 1.72 5.26 -17.32 -0.09 1.63 16 3 Si 0.91 17.71 29.58 -169.99 -5.03 12.68 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.44 -10.92 6.72 -37.89 -0.25 -11.18 16 8 H 0.09 2.18 6.47 -52.48 -0.34 1.84 16 9 C 0.09 2.26 5.54 -106.42 -0.59 1.67 16 10 C -0.13 -3.21 8.72 -38.98 -0.34 -3.55 16 11 C -0.15 -3.44 10.03 -39.84 -0.40 -3.84 16 12 C -0.03 -0.71 11.16 -17.36 -0.19 -0.91 16 13 N -0.45 -11.41 10.15 -9.17 -0.09 -11.50 16 14 C 0.01 0.31 6.43 -82.24 -0.53 -0.22 16 15 C 0.06 1.33 5.26 -104.93 -0.55 0.78 16 16 C -0.12 -2.65 7.84 -39.15 -0.31 -2.95 16 17 C -0.10 -1.81 10.03 -39.66 -0.40 -2.21 16 18 C -0.21 -3.71 8.62 -39.31 -0.34 -4.05 16 19 C 0.11 2.17 6.56 -39.27 -0.26 1.92 16 20 O -0.30 -5.30 10.06 -43.25 -0.44 -5.73 16 21 C 0.26 3.49 2.52 37.20 0.09 3.58 16 22 H 0.06 0.75 7.35 -51.92 -0.38 0.37 16 23 C -0.14 -1.45 5.79 -26.59 -0.15 -1.60 16 24 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 25 C -0.16 -1.19 6.14 -26.59 -0.16 -1.35 16 26 C 0.07 0.64 6.84 37.21 0.25 0.89 16 27 O -0.39 -5.46 8.92 -59.04 -0.53 -5.98 16 28 C -0.14 -2.94 9.60 -39.01 -0.37 -3.32 16 29 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 30 H 0.13 3.22 6.33 -52.49 -0.33 2.89 16 31 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 32 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 33 H 0.14 3.02 6.73 -52.49 -0.35 2.67 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.82 5.67 -52.49 -0.30 1.52 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.12 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -28.83 358.22 -10.74 -39.57 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.91 Total: 9.85 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -4.75 Total: -25.76 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.51 Total: -30.03 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.96 Total: -11.71 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.83 -10.74 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241209049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.272 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds