Wall clock time and date at job start Tue Mar 31 2020 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47087 * 240.00094 * 3 2 1 5 5 H 1.48498 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47222 * 120.00311 * 3 2 1 7 7 C 1.40068 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99962 * 168.27761 * 7 2 1 9 9 C 1.40892 * 120.00446 * 348.28160 * 7 2 1 10 10 C 1.41121 * 120.71440 * 331.61352 * 9 7 2 11 11 C 1.36881 * 118.39391 * 179.97438 * 10 9 7 12 12 C 1.38871 * 119.80110 * 0.02562 * 11 10 9 13 13 N 1.31743 * 121.49857 * 359.71429 * 12 11 10 14 14 C 1.32578 * 121.72363 * 0.57326 * 13 12 11 15 15 C 1.47823 * 119.99201 * 179.70868 * 14 13 12 16 16 C 1.39715 * 120.12814 * 136.10794 * 15 14 13 17 17 C 1.37918 * 119.96391 * 180.02562 * 16 15 14 18 18 C 1.38332 * 120.21213 * 359.97438 * 17 16 15 19 19 C 1.38874 * 120.24728 * 359.97438 * 18 17 16 20 20 O 1.35904 * 119.97879 * 180.02562 * 19 18 17 21 21 C 1.42906 * 117.00158 * 359.97438 * 20 19 18 22 22 H 1.09008 * 109.47449 * 54.97898 * 21 20 19 23 23 C 1.53092 * 109.47703 * 174.99928 * 21 20 19 24 24 C 1.53179 * 109.15829 * 177.59696 * 23 21 20 25 25 C 1.53181 * 109.03519 * 303.01628 * 24 23 21 26 26 C 1.53100 * 109.16063 * 56.98428 * 25 24 23 27 27 O 1.42894 * 109.47979 * 294.94648 * 21 20 19 28 28 C 1.38442 * 120.03549 * 0.27838 * 19 18 17 29 29 H 0.97002 * 119.99577 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.80332 * 359.97438 * 10 9 7 31 31 H 1.08004 * 120.10214 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.24967 * 180.02562 * 12 11 10 33 33 H 1.08002 * 120.01701 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.89975 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.87720 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.52097 * 297.50015 * 23 21 20 37 37 H 1.08993 * 109.52448 * 57.69133 * 23 21 20 38 38 H 1.09001 * 109.54768 * 62.88687 * 24 23 21 39 39 H 1.09001 * 109.54136 * 183.15577 * 24 23 21 40 40 H 1.08995 * 109.52555 * 297.07995 * 25 24 23 41 41 H 1.09001 * 109.57188 * 176.91871 * 25 24 23 42 42 H 1.08997 * 109.47920 * 182.40393 * 26 25 24 43 43 H 1.09000 * 109.48756 * 62.37867 * 26 25 24 44 44 H 1.07999 * 120.10212 * 179.72210 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.0955 1.6963 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2124 7 6 2.0080 -1.2131 -0.0005 8 1 3.0711 -1.2228 -0.1906 9 6 1.3255 -2.4206 0.2467 10 6 0.1631 -2.4409 1.0467 11 6 -0.4625 -3.6403 1.2555 12 6 0.0530 -4.7963 0.6841 13 7 1.1358 -4.7697 -0.0659 14 6 1.7922 -3.6424 -0.3028 15 6 3.0069 -3.6576 -1.1450 16 6 3.1976 -2.6739 -2.1186 17 6 4.3320 -2.6917 -2.9028 18 6 5.2833 -3.6807 -2.7286 19 6 5.1032 -4.6622 -1.7627 20 8 6.0416 -5.6310 -1.5957 21 6 7.1871 -5.5786 -2.4486 22 1 7.6598 -4.6001 -2.3625 23 6 8.1826 -6.6650 -2.0335 24 6 9.3796 -6.6417 -2.9891 25 6 8.8772 -6.8309 -4.4238 26 6 7.8547 -5.7380 -4.7465 27 8 6.7837 -5.7958 -3.8021 28 6 3.9659 -4.6572 -0.9733 29 1 -0.4849 0.8401 0.0004 30 1 -0.2235 -1.5320 1.4836 31 1 -1.3543 -3.6876 1.8628 32 1 -0.4480 -5.7378 0.8544 33 1 2.4571 -1.9001 -2.2571 34 1 4.4781 -1.9311 -3.6555 35 1 6.1698 -3.6892 -3.3454 36 1 8.5250 -6.4758 -1.0162 37 1 7.6981 -7.6402 -2.0803 38 1 9.8939 -5.6842 -2.9062 39 1 10.0658 -7.4491 -2.7337 40 1 8.4066 -7.8094 -4.5189 41 1 9.7159 -6.7611 -5.1165 42 1 7.4621 -5.8929 -5.7514 43 1 8.3362 -4.7617 -4.6908 44 1 3.8226 -5.4225 -0.2249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241209049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:08 Heat of formation + Delta-G solvation = -58.883517 kcal Electronic energy + Delta-G solvation = -26874.183753 eV Core-core repulsion = 23141.107469 eV Total energy + Delta-G solvation = -3733.076284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48825 -40.50560 -39.47639 -37.79430 -36.00317 -34.73344 -33.29919 -32.51851 -32.01363 -30.72676 -29.83746 -27.57374 -25.99880 -24.97790 -24.11664 -23.51575 -22.85270 -21.85068 -21.21733 -19.34435 -19.11167 -17.88126 -17.65296 -17.43686 -16.71902 -16.68424 -16.38431 -16.06478 -15.65204 -15.39156 -15.24636 -14.92169 -14.72545 -14.29673 -14.25773 -14.04530 -13.86902 -13.73261 -13.60564 -13.27339 -13.17746 -12.83140 -12.74072 -12.52067 -12.27587 -12.20926 -12.11091 -11.93409 -11.82932 -11.54565 -11.31989 -11.18646 -10.54995 -10.33311 -9.97478 -9.92465 -9.27799 -9.00510 -8.67528 -6.42214 0.17208 0.61231 0.88246 1.17065 1.39365 1.50506 1.53863 1.97391 2.18034 2.72120 2.79735 2.97720 3.65869 3.67414 3.76419 3.85756 3.94519 3.97772 4.01426 4.08593 4.20312 4.42157 4.46832 4.55594 4.57585 4.58566 4.63127 4.70552 4.77776 4.82943 4.85324 4.98937 5.03889 5.07246 5.10803 5.14595 5.21196 5.27387 5.33267 5.42279 5.61644 5.75415 5.77390 5.92149 6.01838 6.02769 6.16198 6.47804 6.51398 6.72134 6.78552 7.68757 8.23183 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003268 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.214255 B = 8566.214781 C = 9784.571146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.059 3.941 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.041 4.041 13 N -0.473 5.473 14 C -0.007 4.007 15 C 0.032 3.968 16 C -0.138 4.138 17 C -0.086 4.086 18 C -0.195 4.195 19 C 0.117 3.883 20 O -0.318 6.318 21 C 0.249 3.751 22 H 0.074 0.926 23 C -0.139 4.139 24 C -0.114 4.114 25 C -0.157 4.157 26 C 0.058 3.942 27 O -0.423 6.423 28 C -0.155 4.155 29 H 0.293 0.707 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.256 -4.340 -7.577 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.104 0.896 9 C 0.055 3.945 10 C -0.177 4.177 11 C -0.167 4.167 12 C -0.201 4.201 13 N -0.180 5.180 14 C -0.144 4.144 15 C 0.031 3.969 16 C -0.158 4.158 17 C -0.104 4.104 18 C -0.213 4.213 19 C 0.073 3.927 20 O -0.233 6.233 21 C 0.155 3.845 22 H 0.091 0.909 23 C -0.177 4.177 24 C -0.151 4.151 25 C -0.194 4.194 26 C -0.017 4.017 27 O -0.345 6.345 28 C -0.175 4.175 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.137 0.863 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.151 -5.154 -7.860 19.557 hybrid contribution -0.583 1.363 0.669 1.626 sum 16.568 -3.791 -7.191 18.455 Atomic orbital electron populations 1.69781 1.09005 1.31224 1.34091 1.26803 0.95523 1.04412 0.91115 0.85255 0.78890 0.75367 0.80476 1.17698 1.19018 1.18536 1.19716 0.96630 0.90622 1.41434 0.89608 1.18680 0.92655 0.93390 0.89797 1.21507 0.98510 0.97480 1.00158 1.21756 1.00432 0.93694 1.00842 1.22250 0.96616 0.98209 1.03072 1.67097 1.07774 1.29908 1.13250 1.19876 0.99526 0.89854 1.05191 1.18251 0.91413 0.93621 0.93597 1.21320 0.99252 0.99143 0.96036 1.21092 0.92542 0.98148 0.98580 1.21369 1.02547 0.96627 1.00789 1.18744 0.89137 0.89024 0.95807 1.86181 1.31842 1.49507 1.55767 1.23410 0.83144 0.99349 0.78624 0.90893 1.22095 0.95437 0.98302 1.01827 1.21616 0.95831 1.04247 0.93412 1.22247 0.99859 0.99538 0.97770 1.22861 0.87646 0.99142 0.92083 1.87913 1.36600 1.93117 1.16896 1.20389 0.93287 1.01001 1.02794 0.89552 0.86158 0.84981 0.83102 0.86299 0.83046 0.83529 0.89201 0.91073 0.90112 0.88823 0.91596 0.87893 0.87470 0.91395 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.23 10.91 21.85 0.24 -39.99 16 2 C 0.04 1.81 5.26 85.29 0.45 2.26 16 3 Si 0.98 35.99 29.58 68.60 2.03 38.02 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.46 -23.44 6.72 23.36 0.16 -23.29 16 8 H 0.09 4.34 6.47 -2.91 -0.02 4.33 16 9 C 0.06 3.22 5.54 -21.03 -0.12 3.10 16 10 C -0.15 -7.84 8.72 22.66 0.20 -7.64 16 11 C -0.15 -6.86 10.03 22.10 0.22 -6.64 16 12 C -0.04 -1.93 11.16 84.86 0.95 -0.98 16 13 N -0.47 -24.82 10.15 -182.93 -1.86 -26.68 16 14 C -0.01 -0.37 6.43 42.47 0.27 -0.10 16 15 C 0.03 1.56 5.26 -20.06 -0.11 1.45 16 16 C -0.14 -6.06 7.84 22.55 0.18 -5.88 16 17 C -0.09 -3.04 10.03 22.22 0.22 -2.82 16 18 C -0.19 -6.65 8.62 22.44 0.19 -6.46 16 19 C 0.12 4.56 6.56 22.47 0.15 4.71 16 20 O -0.32 -11.16 10.06 -69.70 -0.70 -11.86 16 21 C 0.25 6.31 2.52 72.01 0.18 6.49 16 22 H 0.07 1.64 7.35 -2.38 -0.02 1.62 16 23 C -0.14 -2.62 5.79 30.68 0.18 -2.44 16 24 C -0.11 -1.34 6.03 30.71 0.19 -1.15 16 25 C -0.16 -1.83 6.14 30.69 0.19 -1.64 16 26 C 0.06 0.91 6.84 72.02 0.49 1.40 16 27 O -0.42 -10.92 8.92 -126.21 -1.13 -12.05 16 28 C -0.16 -7.05 9.60 22.64 0.22 -6.83 16 29 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 30 H 0.12 6.31 6.33 -2.91 -0.02 6.29 16 31 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 32 H 0.15 6.03 8.06 -2.91 -0.02 6.00 16 33 H 0.12 5.52 6.73 -2.91 -0.02 5.51 16 34 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.15 4.10 5.67 -2.91 -0.02 4.08 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -65.49 358.22 3.80 -61.69 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 1.01 Total: 37.31 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 4.21 Total: -46.44 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.62 Total: -66.67 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.83 Total: -23.91 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -65.49 3.80 -61.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241209049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.802 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds