Wall clock time and date at job start Tue Mar 31 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48504 * 109.47256 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47415 * 120.00273 * 3 2 1 6 6 H 1.48506 * 109.47397 * 240.00592 * 3 2 1 7 7 C 1.40033 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99804 * 154.36186 * 7 2 1 9 9 C 1.41047 * 119.99597 * 334.36337 * 7 2 1 10 10 C 1.41304 * 120.55090 * 154.93450 * 9 7 2 11 11 C 1.36613 * 118.41079 * 179.97438 * 10 9 7 12 12 C 1.39888 * 119.46728 * 359.97438 * 11 10 9 13 13 C 1.47976 * 119.44723 * 179.97438 * 12 11 10 14 14 C 1.39653 * 120.11900 * 4.99471 * 13 12 11 15 15 C 1.37938 * 119.96563 * 179.97438 * 14 13 12 16 16 C 1.38325 * 120.20264 * 359.97438 * 15 14 13 17 17 C 1.38856 * 120.23503 * 0.02795 * 16 15 14 18 18 O 1.35907 * 119.98083 * 179.97438 * 17 16 15 19 19 C 1.42904 * 117.00065 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.48380 * 54.97233 * 19 18 17 21 21 C 1.53085 * 109.48141 * 175.00271 * 19 18 17 22 22 C 1.53180 * 109.16483 * 177.59224 * 21 19 18 23 23 C 1.53186 * 109.03283 * 303.01660 * 22 21 19 24 24 C 1.53090 * 109.16353 * 56.98103 * 23 22 21 25 25 O 1.42908 * 109.41382 * 302.38971 * 24 23 22 26 26 C 1.38454 * 120.03448 * 359.74024 * 17 16 15 27 27 N 1.33011 * 121.09982 * 359.97438 * 12 11 10 28 28 C 1.31262 * 121.73001 * 359.72612 * 27 12 11 29 29 H 0.97003 * 120.00202 * 174.34657 * 1 2 3 30 30 H 1.07995 * 120.79404 * 359.97438 * 10 9 7 31 31 H 1.07997 * 120.26136 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.01836 * 359.96213 * 14 13 12 33 33 H 1.07997 * 119.90180 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.87906 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.52236 * 297.49539 * 21 19 18 36 36 H 1.08997 * 109.52750 * 57.62127 * 21 19 18 37 37 H 1.09001 * 109.54376 * 62.88287 * 22 21 19 38 38 H 1.08997 * 109.54378 * 183.06261 * 22 21 19 39 39 H 1.08999 * 109.51522 * 176.88447 * 23 22 21 40 40 H 1.08997 * 109.51961 * 297.07035 * 23 22 21 41 41 H 1.09006 * 109.48058 * 62.37058 * 24 23 22 42 42 H 1.08990 * 109.47904 * 182.39250 * 24 23 22 43 43 H 1.08003 * 120.10279 * 180.27502 * 26 17 16 44 44 H 1.08000 * 119.80335 * 180.28544 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 1.2768 2.7465 0.0006 5 1 3.0957 1.6964 1.2125 6 1 3.0955 1.6965 -1.2126 7 6 2.0080 -1.2127 -0.0005 8 1 3.0082 -1.2585 -0.4052 9 6 1.4068 -2.3743 0.5275 10 6 1.8151 -3.6553 0.0928 11 6 1.2037 -4.7507 0.6337 12 6 0.2011 -4.5754 1.5934 13 6 -0.4613 -5.7622 2.1786 14 6 -0.0163 -7.0451 1.8526 15 6 -0.6357 -8.1491 2.4004 16 6 -1.6971 -7.9901 3.2730 17 6 -2.1465 -6.7183 3.6029 18 8 -3.1902 -6.5680 4.4604 19 6 -3.7771 -7.7614 4.9835 20 1 -3.0057 -8.3684 5.4574 21 6 -4.8450 -7.3944 6.0172 22 6 -5.5108 -8.6755 6.5288 23 6 -6.0933 -9.4451 5.3393 24 6 -4.9773 -9.7329 4.3317 25 8 -4.3799 -8.5017 3.9200 26 6 -1.5289 -5.6032 3.0625 27 7 -0.1667 -3.3597 1.9886 28 6 0.3944 -2.2769 1.5032 29 1 -0.4850 -0.8360 -0.0828 30 1 2.5919 -3.7658 -0.6492 31 1 1.4921 -5.7439 0.3229 32 1 0.8124 -7.1728 1.1718 33 1 -0.2904 -9.1408 2.1479 34 1 -2.1781 -8.8581 3.6991 35 1 -4.3796 -6.8680 6.8505 36 1 -5.5948 -6.7529 5.5543 37 1 -4.7701 -9.2940 7.0358 38 1 -6.3093 -8.4185 7.2248 39 1 -6.5207 -10.3853 5.6879 40 1 -6.8690 -8.8460 4.8625 41 1 -4.2216 -10.3658 4.7972 42 1 -5.3941 -10.2431 3.4635 43 1 -1.8746 -4.6135 3.3218 44 1 0.0747 -1.3052 1.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241209463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:17 Heat of formation + Delta-G solvation = -52.893749 kcal Electronic energy + Delta-G solvation = -26173.718765 eV Core-core repulsion = 22440.902217 eV Total energy + Delta-G solvation = -3732.816549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42086 -39.07791 -38.28063 -36.64726 -34.47452 -34.04145 -31.48344 -31.23841 -30.97050 -29.45443 -28.38064 -25.59612 -25.17495 -23.89663 -22.80281 -22.30952 -21.11646 -20.71642 -20.29995 -18.23107 -17.95407 -16.97957 -16.73325 -15.62626 -15.60985 -15.20957 -15.01435 -14.62176 -14.48956 -14.26139 -14.04249 -13.82516 -13.43875 -13.12872 -13.07662 -12.95051 -12.83140 -12.52683 -12.14163 -11.81445 -11.65265 -11.56164 -11.43814 -11.35982 -11.21638 -11.06959 -11.01945 -10.65687 -10.53915 -10.37285 -10.05135 -9.79249 -9.37676 -8.78776 -8.60557 -8.12044 -7.91316 -7.53831 -7.36883 -4.67838 1.52148 1.93389 2.65205 2.77372 2.95911 3.04131 3.17373 3.25269 3.67649 3.82775 4.19374 4.40317 4.41950 4.54121 4.56793 4.64308 4.70890 5.00358 5.18169 5.20985 5.29711 5.34154 5.39569 5.44346 5.49982 5.52051 5.60759 5.68207 5.72793 5.88877 5.93068 6.03233 6.08653 6.27972 6.36516 6.58738 6.67960 6.77231 6.85558 6.88864 6.95905 7.07332 7.20244 7.40586 7.48597 7.49917 7.72078 7.76222 7.92738 8.35957 8.48104 9.46022 9.72773 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002342 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.715681 B =11950.570998 C =12815.936511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.033 3.967 3 Si 1.070 2.930 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.049 3.951 10 C -0.205 4.205 11 C -0.096 4.096 12 C -0.025 4.025 13 C 0.055 3.945 14 C -0.168 4.168 15 C -0.084 4.084 16 C -0.218 4.218 17 C 0.125 3.875 18 O -0.298 6.298 19 C 0.258 3.742 20 H 0.061 0.939 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.161 4.161 24 C 0.069 3.931 25 O -0.395 6.395 26 C -0.141 4.141 27 N -0.436 5.436 28 C -0.009 4.009 29 H 0.303 0.697 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 -15.211 8.916 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.192 4.192 3 Si 0.892 3.108 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.044 3.956 10 C -0.230 4.230 11 C -0.116 4.116 12 C -0.157 4.157 13 C 0.054 3.946 14 C -0.187 4.187 15 C -0.102 4.102 16 C -0.237 4.237 17 C 0.081 3.919 18 O -0.213 6.213 19 C 0.163 3.837 20 H 0.078 0.922 21 C -0.179 4.179 22 C -0.156 4.156 23 C -0.198 4.198 24 C -0.007 4.007 25 O -0.316 6.316 26 C -0.160 4.160 27 N -0.143 5.143 28 C -0.177 4.177 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.153 0.847 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.371 -13.302 9.464 18.346 hybrid contribution 0.862 -2.161 -0.586 2.400 sum -7.509 -15.464 8.878 19.348 Atomic orbital electron populations 1.70461 1.08254 1.34835 1.25599 1.27324 0.95632 1.04872 0.91328 0.83562 0.75693 0.73270 0.78325 1.19440 1.19584 1.19804 1.20717 1.03033 0.93790 1.33434 0.89779 1.18684 0.92488 0.93331 0.91107 1.20953 1.05275 0.92434 1.04322 1.21225 0.95962 0.98000 0.96412 1.18689 1.02488 0.89981 1.04499 1.18380 0.92081 0.91713 0.92378 1.21067 1.02406 0.91598 1.03628 1.20664 0.95185 0.98064 0.96268 1.21056 1.01812 0.95381 1.05421 1.18813 0.87515 0.94097 0.91481 1.86222 1.45134 1.30747 1.59153 1.23016 0.91815 0.83220 0.85619 0.92159 1.22037 0.98504 0.98978 0.98421 1.21583 1.00486 0.95792 0.97758 1.22263 0.99287 1.01400 0.96897 1.22534 0.94200 0.85166 0.98837 1.87960 1.74530 1.34439 1.34669 1.20486 0.98005 0.97427 1.00130 1.66986 1.24740 0.98226 1.24323 1.22678 1.00678 0.95466 0.98836 0.88254 0.87648 0.87700 0.86192 0.86575 0.86354 0.89717 0.89733 0.91493 0.90487 0.90459 0.90597 0.93027 0.88350 0.84657 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.45 12.33 55.55 0.68 -18.76 16 2 C 0.03 0.79 4.94 -17.33 -0.09 0.70 16 3 Si 1.07 19.96 30.00 -169.99 -5.10 14.86 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 7 C -0.48 -11.99 8.99 -37.85 -0.34 -12.33 16 8 H 0.08 1.99 7.96 -52.49 -0.42 1.57 16 9 C 0.05 1.26 5.31 -106.64 -0.57 0.70 16 10 C -0.21 -4.89 9.88 -39.00 -0.39 -5.27 16 11 C -0.10 -2.16 9.37 -39.55 -0.37 -2.54 16 12 C -0.03 -0.60 6.73 -82.75 -0.56 -1.16 16 13 C 0.06 1.18 5.87 -104.91 -0.62 0.56 16 14 C -0.17 -3.04 9.41 -39.16 -0.37 -3.40 16 15 C -0.08 -1.33 10.03 -39.66 -0.40 -1.73 16 16 C -0.22 -3.55 8.62 -39.32 -0.34 -3.89 16 17 C 0.12 2.30 6.56 -39.27 -0.26 2.04 16 18 O -0.30 -5.06 10.06 -43.26 -0.44 -5.50 16 19 C 0.26 3.30 2.52 37.20 0.09 3.39 16 20 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 21 C -0.14 -1.39 5.79 -26.59 -0.15 -1.55 16 22 C -0.12 -0.83 6.03 -26.54 -0.16 -0.99 16 23 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 24 C 0.07 0.59 6.84 37.20 0.25 0.84 16 25 O -0.39 -5.16 8.92 -59.04 -0.53 -5.68 16 26 C -0.14 -2.95 9.51 -39.03 -0.37 -3.32 16 27 N -0.44 -11.20 9.40 -9.10 -0.09 -11.29 16 28 C -0.01 -0.23 9.15 -16.77 -0.15 -0.38 16 29 H 0.30 7.99 6.70 -40.82 -0.27 7.71 16 30 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.11 2.01 6.18 -52.49 -0.32 1.69 16 32 H 0.12 1.97 6.18 -52.48 -0.32 1.64 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.67 5.68 -52.49 -0.30 1.38 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.14 2.99 7.53 -52.48 -0.40 2.59 16 44 H 0.14 3.65 6.50 -52.49 -0.34 3.31 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -28.98 359.04 -10.77 -39.75 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.78 Total: 10.79 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -4.94 Total: -29.58 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.60 Total: -30.05 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.96 Total: -11.18 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.10 Total: 14.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.98 -10.77 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241209463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.148 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds