Wall clock time and date at job start Tue Mar 31 2020 14:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48504 * 109.47256 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47415 * 120.00273 * 3 2 1 6 6 H 1.48506 * 109.47397 * 240.00592 * 3 2 1 7 7 C 1.40033 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99804 * 154.36186 * 7 2 1 9 9 C 1.41047 * 119.99597 * 334.36337 * 7 2 1 10 10 C 1.41304 * 120.55090 * 154.93450 * 9 7 2 11 11 C 1.36613 * 118.41079 * 179.97438 * 10 9 7 12 12 C 1.39888 * 119.46728 * 359.97438 * 11 10 9 13 13 C 1.47976 * 119.44723 * 179.97438 * 12 11 10 14 14 C 1.39653 * 120.11900 * 4.99471 * 13 12 11 15 15 C 1.37938 * 119.96563 * 179.97438 * 14 13 12 16 16 C 1.38325 * 120.20264 * 359.97438 * 15 14 13 17 17 C 1.38856 * 120.23503 * 0.02795 * 16 15 14 18 18 O 1.35907 * 119.98083 * 179.97438 * 17 16 15 19 19 C 1.42904 * 117.00065 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.48380 * 54.97233 * 19 18 17 21 21 C 1.53085 * 109.48141 * 175.00271 * 19 18 17 22 22 C 1.53180 * 109.16483 * 177.59224 * 21 19 18 23 23 C 1.53186 * 109.03283 * 303.01660 * 22 21 19 24 24 C 1.53090 * 109.16353 * 56.98103 * 23 22 21 25 25 O 1.42908 * 109.41382 * 302.38971 * 24 23 22 26 26 C 1.38454 * 120.03448 * 359.74024 * 17 16 15 27 27 N 1.33011 * 121.09982 * 359.97438 * 12 11 10 28 28 C 1.31262 * 121.73001 * 359.72612 * 27 12 11 29 29 H 0.97003 * 120.00202 * 174.34657 * 1 2 3 30 30 H 1.07995 * 120.79404 * 359.97438 * 10 9 7 31 31 H 1.07997 * 120.26136 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.01836 * 359.96213 * 14 13 12 33 33 H 1.07997 * 119.90180 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.87906 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.52236 * 297.49539 * 21 19 18 36 36 H 1.08997 * 109.52750 * 57.62127 * 21 19 18 37 37 H 1.09001 * 109.54376 * 62.88287 * 22 21 19 38 38 H 1.08997 * 109.54378 * 183.06261 * 22 21 19 39 39 H 1.08999 * 109.51522 * 176.88447 * 23 22 21 40 40 H 1.08997 * 109.51961 * 297.07035 * 23 22 21 41 41 H 1.09006 * 109.48058 * 62.37058 * 24 23 22 42 42 H 1.08990 * 109.47904 * 182.39250 * 24 23 22 43 43 H 1.08003 * 120.10279 * 180.27502 * 26 17 16 44 44 H 1.08000 * 119.80335 * 180.28544 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 1.2768 2.7465 0.0006 5 1 3.0957 1.6964 1.2125 6 1 3.0955 1.6965 -1.2126 7 6 2.0080 -1.2127 -0.0005 8 1 3.0082 -1.2585 -0.4052 9 6 1.4068 -2.3743 0.5275 10 6 1.8151 -3.6553 0.0928 11 6 1.2037 -4.7507 0.6337 12 6 0.2011 -4.5754 1.5934 13 6 -0.4613 -5.7622 2.1786 14 6 -0.0163 -7.0451 1.8526 15 6 -0.6357 -8.1491 2.4004 16 6 -1.6971 -7.9901 3.2730 17 6 -2.1465 -6.7183 3.6029 18 8 -3.1902 -6.5680 4.4604 19 6 -3.7771 -7.7614 4.9835 20 1 -3.0057 -8.3684 5.4574 21 6 -4.8450 -7.3944 6.0172 22 6 -5.5108 -8.6755 6.5288 23 6 -6.0933 -9.4451 5.3393 24 6 -4.9773 -9.7329 4.3317 25 8 -4.3799 -8.5017 3.9200 26 6 -1.5289 -5.6032 3.0625 27 7 -0.1667 -3.3597 1.9886 28 6 0.3944 -2.2769 1.5032 29 1 -0.4850 -0.8360 -0.0828 30 1 2.5919 -3.7658 -0.6492 31 1 1.4921 -5.7439 0.3229 32 1 0.8124 -7.1728 1.1718 33 1 -0.2904 -9.1408 2.1479 34 1 -2.1781 -8.8581 3.6991 35 1 -4.3796 -6.8680 6.8505 36 1 -5.5948 -6.7529 5.5543 37 1 -4.7701 -9.2940 7.0358 38 1 -6.3093 -8.4185 7.2248 39 1 -6.5207 -10.3853 5.6879 40 1 -6.8690 -8.8460 4.8625 41 1 -4.2216 -10.3658 4.7972 42 1 -5.3941 -10.2431 3.4635 43 1 -1.8746 -4.6135 3.3218 44 1 0.0747 -1.3052 1.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241209463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:16 Heat of formation + Delta-G solvation = -67.265753 kcal Electronic energy + Delta-G solvation = -26174.341982 eV Core-core repulsion = 22440.902217 eV Total energy + Delta-G solvation = -3733.439765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55132 -40.66093 -39.61810 -37.97127 -36.27023 -34.76976 -33.27036 -32.80926 -32.07223 -30.78318 -29.97634 -27.32414 -26.03617 -24.90618 -24.38054 -23.85774 -22.67838 -22.03671 -21.26033 -20.05874 -19.31613 -17.97763 -17.74593 -17.22921 -16.91207 -16.70638 -16.25211 -16.11851 -15.60326 -15.49637 -15.18157 -15.08920 -14.86828 -14.64509 -14.22235 -14.14625 -13.97394 -13.88295 -13.73673 -13.54425 -13.05743 -12.89129 -12.76722 -12.51969 -12.32493 -12.16533 -12.02120 -11.96455 -11.78324 -11.69531 -11.37003 -11.12712 -10.59891 -10.54861 -10.36800 -10.01305 -9.44018 -9.39136 -9.03237 -6.60115 -0.06167 0.52067 0.79800 1.02067 1.50794 1.65323 1.80819 1.91537 2.27178 2.52810 2.77348 2.95353 3.54976 3.60966 3.66568 3.71989 3.88906 3.93800 3.96649 3.98610 4.08637 4.24804 4.33239 4.37853 4.41473 4.53748 4.54801 4.58645 4.73483 4.74461 4.80354 4.86141 4.96591 5.03978 5.04352 5.05412 5.10176 5.29391 5.33522 5.42104 5.45657 5.48692 5.56898 5.73625 5.81994 5.90350 6.03387 6.11208 6.44517 6.46531 6.63378 7.54696 7.81327 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002342 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.715681 B =11950.570998 C =12815.936511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.001 3.999 3 Si 1.122 2.878 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.249 1.249 7 C -0.510 4.510 8 H 0.092 0.908 9 C 0.025 3.975 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.027 4.027 13 C 0.023 3.977 14 C -0.164 4.164 15 C -0.071 4.071 16 C -0.203 4.203 17 C 0.120 3.880 18 O -0.322 6.322 19 C 0.250 3.750 20 H 0.077 0.923 21 C -0.141 4.141 22 C -0.113 4.113 23 C -0.158 4.158 24 C 0.059 3.941 25 O -0.424 6.424 26 C -0.167 4.167 27 N -0.460 5.460 28 C -0.036 4.036 29 H 0.284 0.716 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 -18.955 9.421 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.218 4.218 3 Si 0.937 3.063 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.173 1.173 7 C -0.537 4.537 8 H 0.111 0.889 9 C 0.020 3.980 10 C -0.235 4.235 11 C -0.117 4.117 12 C -0.161 4.161 13 C 0.022 3.978 14 C -0.183 4.183 15 C -0.089 4.089 16 C -0.222 4.222 17 C 0.076 3.924 18 O -0.237 6.237 19 C 0.156 3.844 20 H 0.095 0.905 21 C -0.179 4.179 22 C -0.151 4.151 23 C -0.195 4.195 24 C -0.016 4.016 25 O -0.345 6.345 26 C -0.186 4.186 27 N -0.168 5.168 28 C -0.201 4.201 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.857 -17.051 9.972 21.258 hybrid contribution 0.521 -1.362 -0.611 1.581 sum -7.336 -18.413 9.361 21.920 Atomic orbital electron populations 1.70575 1.09236 1.33533 1.28264 1.28805 0.95488 1.08096 0.89399 0.82956 0.74748 0.68985 0.79600 1.19623 1.18533 1.17287 1.20927 1.03576 0.94386 1.34828 0.88949 1.18970 0.92766 0.94856 0.91423 1.21299 1.05587 0.92076 1.04494 1.21587 0.95008 0.99582 0.95485 1.19372 1.02365 0.90196 1.04159 1.18463 0.93170 0.92229 0.93943 1.21326 1.02790 0.90579 1.03614 1.21167 0.93819 0.99420 0.94455 1.21438 1.01255 0.95113 1.04346 1.18871 0.87782 0.94211 0.91531 1.86206 1.44838 1.33834 1.58856 1.23398 0.92808 0.82379 0.85785 0.90541 1.22109 0.97533 1.00579 0.97677 1.21612 1.01086 0.94314 0.98046 1.22255 0.98483 1.02443 0.96346 1.22867 0.95077 0.83701 0.99995 1.87912 1.75055 1.36210 1.35371 1.20378 0.99313 0.97204 1.01746 1.66976 1.25532 0.99091 1.25179 1.22492 1.02245 0.95118 1.00257 0.90329 0.85524 0.83667 0.84091 0.81891 0.83551 0.89342 0.91363 0.89912 0.88978 0.87782 0.91785 0.91119 0.87340 0.87790 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.50 12.33 21.84 0.27 -42.23 16 2 C 0.00 0.03 4.94 85.28 0.42 0.45 16 3 Si 1.12 40.66 30.00 68.60 2.06 42.72 16 4 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 6 H -0.25 -8.04 7.11 99.48 0.71 -7.34 16 7 C -0.51 -26.22 8.99 23.39 0.21 -26.01 16 8 H 0.09 4.44 7.96 -2.91 -0.02 4.42 16 9 C 0.02 1.34 5.31 -21.17 -0.11 1.22 16 10 C -0.21 -10.04 9.88 22.64 0.22 -9.82 16 11 C -0.10 -4.33 9.37 22.29 0.21 -4.12 16 12 C -0.03 -1.34 6.73 41.95 0.28 -1.06 16 13 C 0.02 0.98 5.87 -20.05 -0.12 0.86 16 14 C -0.16 -5.48 9.41 22.54 0.21 -5.27 16 15 C -0.07 -1.94 10.03 22.22 0.22 -1.72 16 16 C -0.20 -5.99 8.62 22.44 0.19 -5.80 16 17 C 0.12 4.40 6.56 22.47 0.15 4.55 16 18 O -0.32 -11.05 10.06 -69.74 -0.70 -11.75 16 19 C 0.25 6.03 2.52 72.01 0.18 6.21 16 20 H 0.08 1.56 7.35 -2.39 -0.02 1.54 16 21 C -0.14 -2.62 5.79 30.68 0.18 -2.44 16 22 C -0.11 -1.26 6.03 30.72 0.19 -1.07 16 23 C -0.16 -1.70 6.14 30.69 0.19 -1.52 16 24 C 0.06 0.82 6.84 72.01 0.49 1.31 16 25 O -0.42 -10.23 8.92 -126.21 -1.13 -11.35 16 26 C -0.17 -7.23 9.51 22.63 0.22 -7.02 16 27 N -0.46 -25.20 9.40 -182.71 -1.72 -26.92 16 28 C -0.04 -2.01 9.15 85.44 0.78 -1.23 16 29 H 0.28 16.17 6.70 -92.71 -0.62 15.55 16 30 H 0.13 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.15 5.16 6.18 -2.91 -0.02 5.14 16 32 H 0.14 4.04 6.18 -2.91 -0.02 4.03 16 33 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.15 3.50 5.68 -2.91 -0.02 3.49 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 5.03 7.53 -2.91 -0.02 5.01 16 44 H 0.12 6.98 6.50 -2.91 -0.02 6.96 16 Total: -1.00 -68.55 359.04 4.06 -64.48 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 1.16 Total: 37.53 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 4.11 Total: -52.48 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.45 Total: -69.15 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.83 Total: -23.11 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.06 Total: 42.72 kcal Total: -68.55 4.06 -64.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241209463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.781 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds