Wall clock time and date at job start Tue Mar 31 2020 14:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 119.99592 * 2 1 4 4 H 1.48498 * 109.47044 * 240.00104 * 3 2 1 5 5 H 1.48494 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46784 * 120.00529 * 3 2 1 7 7 C 1.39931 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00279 * 197.37663 * 7 2 1 9 9 C 1.41445 * 120.00089 * 17.37397 * 7 2 1 10 10 C 1.40807 * 120.60277 * 203.40391 * 9 7 2 11 11 N 1.31499 * 120.66029 * 179.97438 * 10 9 7 12 12 C 1.31943 * 122.11754 * 0.02562 * 11 10 9 13 13 C 1.39660 * 121.15923 * 359.97438 * 12 11 10 14 14 C 1.48411 * 120.41395 * 179.97438 * 13 12 11 15 15 C 1.39369 * 120.09732 * 180.02562 * 14 13 12 16 16 C 1.38022 * 119.99342 * 180.02562 * 15 14 13 17 17 C 1.38250 * 120.17994 * 359.97060 * 16 15 14 18 18 C 1.38787 * 120.18691 * 0.03012 * 17 16 15 19 19 O 1.35902 * 119.99673 * 179.97438 * 18 17 16 20 20 C 1.42900 * 117.00301 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.48001 * 54.97747 * 20 19 18 22 22 C 1.53086 * 109.48307 * 174.99941 * 20 19 18 23 23 C 1.53172 * 109.16570 * 177.58938 * 22 20 19 24 24 C 1.53179 * 109.03927 * 303.02185 * 23 22 20 25 25 C 1.53096 * 109.16067 * 56.97686 * 24 23 22 26 26 O 1.42901 * 109.41494 * 302.39150 * 25 24 23 27 27 C 1.38548 * 120.00327 * 359.71595 * 18 17 16 28 28 C 1.39175 * 119.17464 * 0.25791 * 13 12 11 29 29 H 0.96996 * 120.00292 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.66928 * 359.97438 * 10 9 7 31 31 H 1.08007 * 119.41916 * 179.97438 * 12 11 10 32 32 H 1.08001 * 120.00258 * 359.97438 * 15 14 13 33 33 H 1.08010 * 119.91308 * 179.97438 * 16 15 14 34 34 H 1.07999 * 119.90381 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.52669 * 297.50296 * 22 20 19 36 36 H 1.09010 * 109.51898 * 57.62246 * 22 20 19 37 37 H 1.09002 * 109.54232 * 62.88934 * 23 22 20 38 38 H 1.08996 * 109.54560 * 183.06366 * 23 22 20 39 39 H 1.09000 * 109.52480 * 176.87942 * 24 23 22 40 40 H 1.08993 * 109.52359 * 297.07576 * 24 23 22 41 41 H 1.09006 * 109.47962 * 62.37275 * 25 24 23 42 42 H 1.09005 * 109.48043 * 182.39333 * 25 24 23 43 43 H 1.08002 * 120.08970 * 180.30308 * 27 18 17 44 44 H 1.08007 * 120.94634 * 179.72499 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2333 0.2788 9 6 1.3493 -2.4087 -0.3669 10 6 1.8322 -3.6562 0.0727 11 7 1.2204 -4.7695 -0.2667 12 6 0.1405 -4.7735 -1.0248 13 6 -0.4087 -3.5831 -1.5063 14 6 -1.6237 -3.6069 -2.3583 15 6 -2.1659 -2.4151 -2.8357 16 6 -3.2962 -2.4396 -3.6275 17 6 -3.8930 -3.6443 -3.9497 18 6 -3.3593 -4.8356 -3.4784 19 8 -3.9494 -6.0176 -3.7971 20 6 -5.1159 -5.9592 -4.6205 21 1 -4.8882 -5.4119 -5.5352 22 6 -5.5632 -7.3800 -4.9738 23 6 -6.8475 -7.3107 -5.8056 24 6 -7.9136 -6.5451 -5.0159 25 6 -7.3755 -5.1565 -4.6610 26 8 -6.1646 -5.2928 -3.9145 27 6 -2.2219 -4.8203 -2.6874 28 6 0.2009 -2.3747 -1.1821 29 1 -0.4850 0.8400 0.0004 30 1 2.7139 -3.6990 0.6949 31 1 -0.3269 -5.7138 -1.2774 32 1 -1.7023 -1.4723 -2.5854 33 1 -3.7156 -1.5152 -3.9964 34 1 -4.7775 -3.6583 -4.5693 35 1 -4.7819 -7.8751 -5.5504 36 1 -5.7509 -7.9410 -4.0581 37 1 -6.6468 -6.7932 -6.7437 38 1 -7.2015 -8.3202 -6.0146 39 1 -8.8132 -6.4430 -5.6228 40 1 -8.1499 -7.0888 -4.1013 41 1 -7.1775 -4.5986 -5.5763 42 1 -8.1137 -4.6226 -4.0624 43 1 -1.8026 -5.7468 -2.3239 44 1 -0.1971 -1.4376 -1.5426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241214171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:33 Heat of formation + Delta-G solvation = -46.810189 kcal Electronic energy + Delta-G solvation = -26423.848125 eV Core-core repulsion = 22691.295379 eV Total energy + Delta-G solvation = -3732.552746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48985 -39.08193 -38.15226 -36.67563 -34.13174 -34.07823 -32.14123 -31.22207 -30.45062 -29.42631 -28.09117 -25.71301 -25.26353 -24.04501 -22.66400 -22.61685 -21.00218 -20.64024 -20.22306 -18.04591 -17.09606 -16.96170 -16.81344 -15.97482 -15.63214 -15.32218 -14.91901 -14.81050 -14.68831 -14.30806 -13.91534 -13.81258 -13.26765 -13.16153 -13.08785 -12.97175 -12.71377 -12.51441 -11.94440 -11.84160 -11.61307 -11.56936 -11.45045 -11.35290 -11.30454 -11.17403 -10.82285 -10.69643 -10.60758 -10.46512 -9.91616 -9.81902 -9.40680 -9.13990 -8.14537 -8.01785 -7.86011 -7.22810 -6.87434 -4.52992 1.45169 1.86830 2.69038 2.88118 2.99490 3.01063 3.02890 3.17536 3.63174 3.82361 4.27589 4.37037 4.38740 4.51282 4.60016 4.62178 4.67488 4.97689 5.14859 5.18456 5.28855 5.30773 5.36635 5.48817 5.56647 5.57451 5.63466 5.64369 5.78286 5.82263 5.88729 5.98834 6.08240 6.31693 6.51113 6.64918 6.69347 6.76162 6.84122 6.89097 7.00987 7.08419 7.17496 7.28677 7.63341 7.68535 7.80756 7.89188 8.36905 8.62751 8.65850 9.58768 10.02113 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.002620 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.139924 B =10684.297355 C =11692.969230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.059 3.941 10 C -0.015 4.015 11 N -0.470 5.470 12 C -0.021 4.021 13 C -0.095 4.095 14 C 0.026 3.974 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.205 4.205 18 C 0.122 3.878 19 O -0.298 6.298 20 C 0.258 3.742 21 H 0.062 0.938 22 C -0.141 4.141 23 C -0.119 4.119 24 C -0.161 4.161 25 C 0.069 3.931 26 O -0.395 6.395 27 C -0.148 4.148 28 C -0.113 4.113 29 H 0.285 0.715 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 -6.173 -12.338 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.055 3.945 10 C -0.176 4.176 11 N -0.177 5.177 12 C -0.179 4.179 13 C -0.097 4.097 14 C 0.025 3.975 15 C -0.162 4.162 16 C -0.104 4.104 17 C -0.224 4.224 18 C 0.078 3.922 19 O -0.213 6.213 20 C 0.163 3.837 21 H 0.079 0.921 22 C -0.179 4.179 23 C -0.156 4.156 24 C -0.198 4.198 25 C -0.008 4.008 26 O -0.316 6.316 27 C -0.166 4.166 28 C -0.138 4.138 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.149 0.851 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.601 -6.933 -11.786 20.004 hybrid contribution -0.307 1.712 -0.539 1.821 sum -14.908 -5.221 -12.324 20.035 Atomic orbital electron populations 1.69778 1.07652 1.29805 1.34205 1.25973 0.94808 1.01609 0.92046 0.86284 0.80127 0.79765 0.80172 1.18666 1.20210 1.18796 1.19523 0.98122 0.90768 1.39481 0.89812 1.18480 0.92208 0.93775 0.90026 1.22567 1.02354 0.88056 1.04616 1.66961 1.07876 1.31946 1.10919 1.21821 0.96664 0.95499 1.03887 1.19407 0.94923 0.95591 0.99797 1.18711 0.93396 0.91700 0.93645 1.21300 0.96927 0.98563 0.99394 1.20797 0.95337 0.96877 0.97433 1.21116 1.02652 0.92237 1.06360 1.18731 0.93094 0.84078 0.96298 1.86198 1.38014 1.28856 1.68251 1.23027 0.78640 0.93462 0.88576 0.92090 1.22036 0.98326 0.95596 1.01928 1.21582 0.94227 1.01554 0.98283 1.22262 0.98904 0.97251 1.01428 1.22548 0.85700 0.96140 0.96368 1.87958 1.22388 1.78207 1.43040 1.20452 0.95769 0.98868 1.01522 1.21858 0.97578 0.96119 0.98278 0.90428 0.85530 0.85920 0.85191 0.86298 0.86142 0.89720 0.89738 0.91467 0.90472 0.90426 0.90590 0.92973 0.88279 0.85108 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.46 10.92 55.55 0.61 -18.85 16 2 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 3 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.41 9.08 -37.73 -0.34 -11.75 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.06 1.56 5.59 -106.71 -0.60 0.96 16 10 C -0.01 -0.38 10.96 -16.72 -0.18 -0.56 16 11 N -0.47 -11.81 10.32 -12.28 -0.13 -11.94 16 12 C -0.02 -0.50 10.60 -16.97 -0.18 -0.68 16 13 C -0.09 -2.25 5.88 -104.83 -0.62 -2.87 16 14 C 0.03 0.55 5.87 -104.92 -0.62 -0.07 16 15 C -0.14 -2.76 9.43 -39.24 -0.37 -3.13 16 16 C -0.09 -1.41 10.03 -39.66 -0.40 -1.81 16 17 C -0.20 -3.27 8.62 -39.37 -0.34 -3.61 16 18 C 0.12 2.11 6.56 -39.26 -0.26 1.85 16 19 O -0.30 -4.69 10.06 -43.24 -0.44 -5.12 16 20 C 0.26 3.09 2.52 37.20 0.09 3.18 16 21 H 0.06 0.67 7.35 -51.93 -0.38 0.28 16 22 C -0.14 -1.27 5.79 -26.60 -0.15 -1.43 16 23 C -0.12 -0.77 6.03 -26.55 -0.16 -0.93 16 24 C -0.16 -1.04 6.14 -26.59 -0.16 -1.21 16 25 C 0.07 0.56 6.84 37.21 0.25 0.82 16 26 O -0.39 -4.95 8.92 -59.04 -0.53 -5.47 16 27 C -0.15 -2.81 9.37 -39.10 -0.37 -3.18 16 28 C -0.11 -2.87 8.16 -38.24 -0.31 -3.18 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.13 2.95 8.06 -52.49 -0.42 2.52 16 31 H 0.12 2.61 6.20 -52.48 -0.33 2.28 16 32 H 0.13 2.56 6.26 -52.49 -0.33 2.23 16 33 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.12 1.66 5.68 -52.49 -0.30 1.36 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.13 2.39 6.21 -52.49 -0.33 2.06 16 44 H 0.13 3.38 4.44 -52.48 -0.23 3.15 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -29.17 357.39 -10.59 -39.76 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.67 Total: 9.32 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -4.80 Total: -25.89 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.48 Total: -30.79 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.96 Total: -10.60 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.17 -10.59 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241214171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.049 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds