Wall clock time and date at job start Tue Mar 31 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 119.99592 * 2 1 4 4 H 1.48498 * 109.47044 * 240.00104 * 3 2 1 5 5 H 1.48494 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46784 * 120.00529 * 3 2 1 7 7 C 1.39931 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00279 * 197.37663 * 7 2 1 9 9 C 1.41445 * 120.00089 * 17.37397 * 7 2 1 10 10 C 1.40807 * 120.60277 * 203.40391 * 9 7 2 11 11 N 1.31499 * 120.66029 * 179.97438 * 10 9 7 12 12 C 1.31943 * 122.11754 * 0.02562 * 11 10 9 13 13 C 1.39660 * 121.15923 * 359.97438 * 12 11 10 14 14 C 1.48411 * 120.41395 * 179.97438 * 13 12 11 15 15 C 1.39369 * 120.09732 * 180.02562 * 14 13 12 16 16 C 1.38022 * 119.99342 * 180.02562 * 15 14 13 17 17 C 1.38250 * 120.17994 * 359.97060 * 16 15 14 18 18 C 1.38787 * 120.18691 * 0.03012 * 17 16 15 19 19 O 1.35902 * 119.99673 * 179.97438 * 18 17 16 20 20 C 1.42900 * 117.00301 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.48001 * 54.97747 * 20 19 18 22 22 C 1.53086 * 109.48307 * 174.99941 * 20 19 18 23 23 C 1.53172 * 109.16570 * 177.58938 * 22 20 19 24 24 C 1.53179 * 109.03927 * 303.02185 * 23 22 20 25 25 C 1.53096 * 109.16067 * 56.97686 * 24 23 22 26 26 O 1.42901 * 109.41494 * 302.39150 * 25 24 23 27 27 C 1.38548 * 120.00327 * 359.71595 * 18 17 16 28 28 C 1.39175 * 119.17464 * 0.25791 * 13 12 11 29 29 H 0.96996 * 120.00292 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.66928 * 359.97438 * 10 9 7 31 31 H 1.08007 * 119.41916 * 179.97438 * 12 11 10 32 32 H 1.08001 * 120.00258 * 359.97438 * 15 14 13 33 33 H 1.08010 * 119.91308 * 179.97438 * 16 15 14 34 34 H 1.07999 * 119.90381 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.52669 * 297.50296 * 22 20 19 36 36 H 1.09010 * 109.51898 * 57.62246 * 22 20 19 37 37 H 1.09002 * 109.54232 * 62.88934 * 23 22 20 38 38 H 1.08996 * 109.54560 * 183.06366 * 23 22 20 39 39 H 1.09000 * 109.52480 * 176.87942 * 24 23 22 40 40 H 1.08993 * 109.52359 * 297.07576 * 24 23 22 41 41 H 1.09006 * 109.47962 * 62.37275 * 25 24 23 42 42 H 1.09005 * 109.48043 * 182.39333 * 25 24 23 43 43 H 1.08002 * 120.08970 * 180.30308 * 27 18 17 44 44 H 1.08007 * 120.94634 * 179.72499 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2333 0.2788 9 6 1.3493 -2.4087 -0.3669 10 6 1.8322 -3.6562 0.0727 11 7 1.2204 -4.7695 -0.2667 12 6 0.1405 -4.7735 -1.0248 13 6 -0.4087 -3.5831 -1.5063 14 6 -1.6237 -3.6069 -2.3583 15 6 -2.1659 -2.4151 -2.8357 16 6 -3.2962 -2.4396 -3.6275 17 6 -3.8930 -3.6443 -3.9497 18 6 -3.3593 -4.8356 -3.4784 19 8 -3.9494 -6.0176 -3.7971 20 6 -5.1159 -5.9592 -4.6205 21 1 -4.8882 -5.4119 -5.5352 22 6 -5.5632 -7.3800 -4.9738 23 6 -6.8475 -7.3107 -5.8056 24 6 -7.9136 -6.5451 -5.0159 25 6 -7.3755 -5.1565 -4.6610 26 8 -6.1646 -5.2928 -3.9145 27 6 -2.2219 -4.8203 -2.6874 28 6 0.2009 -2.3747 -1.1821 29 1 -0.4850 0.8400 0.0004 30 1 2.7139 -3.6990 0.6949 31 1 -0.3269 -5.7138 -1.2774 32 1 -1.7023 -1.4723 -2.5854 33 1 -3.7156 -1.5152 -3.9964 34 1 -4.7775 -3.6583 -4.5693 35 1 -4.7819 -7.8751 -5.5504 36 1 -5.7509 -7.9410 -4.0581 37 1 -6.6468 -6.7932 -6.7437 38 1 -7.2015 -8.3202 -6.0146 39 1 -8.8132 -6.4430 -5.6228 40 1 -8.1499 -7.0888 -4.1013 41 1 -7.1775 -4.5986 -5.5763 42 1 -8.1137 -4.6226 -4.0624 43 1 -1.8026 -5.7468 -2.3239 44 1 -0.1971 -1.4376 -1.5426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241214171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:32 Heat of formation + Delta-G solvation = -60.929850 kcal Electronic energy + Delta-G solvation = -26424.460399 eV Core-core repulsion = 22691.295379 eV Total energy + Delta-G solvation = -3733.165020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57649 -40.52518 -39.56443 -37.96321 -35.99761 -34.75605 -33.76121 -32.45953 -32.01135 -30.67200 -29.67773 -27.56841 -26.08860 -24.99887 -24.28157 -23.96996 -22.60455 -21.84400 -21.24907 -19.54708 -18.67383 -18.13088 -17.80270 -17.40023 -17.22709 -16.52590 -16.42697 -16.17344 -15.70423 -15.30178 -15.14799 -15.03985 -14.64099 -14.50269 -14.37514 -14.11798 -13.89976 -13.76959 -13.62470 -13.37801 -13.17677 -12.95386 -12.82760 -12.50652 -12.31539 -12.20704 -12.12043 -11.95251 -11.84241 -11.69125 -11.35857 -11.20373 -10.75538 -10.55864 -10.06356 -9.82050 -9.39648 -8.91407 -8.68537 -6.47310 -0.12839 0.46780 0.90700 1.21935 1.39720 1.50972 1.55611 1.89419 2.18176 2.62362 2.78615 2.95406 3.64144 3.71387 3.73103 3.81313 3.87724 3.92248 3.96526 4.03855 4.06777 4.23546 4.35433 4.40506 4.47138 4.51979 4.57791 4.62352 4.75545 4.79868 4.82264 4.93831 4.98240 5.06394 5.07321 5.12495 5.17805 5.23703 5.29227 5.33807 5.44890 5.55068 5.74361 5.84660 5.88962 6.01824 6.11287 6.40385 6.45528 6.72461 6.73921 7.64623 8.22506 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.002620 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.139924 B =10684.297355 C =11692.969230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.477 4.477 8 H 0.089 0.911 9 C 0.035 3.965 10 C -0.038 4.038 11 N -0.479 5.479 12 C -0.036 4.036 13 C -0.090 4.090 14 C -0.002 4.002 15 C -0.157 4.157 16 C -0.077 4.077 17 C -0.191 4.191 18 C 0.123 3.877 19 O -0.313 6.313 20 C 0.248 3.752 21 H 0.076 0.924 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.158 4.158 25 C 0.059 3.941 26 O -0.424 6.424 27 C -0.157 4.157 28 C -0.136 4.136 29 H 0.294 0.706 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 -5.435 -14.370 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.506 4.506 8 H 0.107 0.893 9 C 0.031 3.969 10 C -0.199 4.199 11 N -0.186 5.186 12 C -0.194 4.194 13 C -0.093 4.093 14 C -0.003 4.003 15 C -0.175 4.175 16 C -0.095 4.095 17 C -0.209 4.209 18 C 0.079 3.921 19 O -0.228 6.228 20 C 0.154 3.846 21 H 0.094 0.906 22 C -0.177 4.177 23 C -0.152 4.152 24 C -0.195 4.195 25 C -0.016 4.016 26 O -0.346 6.346 27 C -0.176 4.176 28 C -0.162 4.162 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.758 -6.223 -13.822 22.596 hybrid contribution 0.146 1.403 0.012 1.410 sum -16.611 -4.820 -13.810 22.134 Atomic orbital electron populations 1.69827 1.09109 1.31309 1.33729 1.26864 0.95556 1.04770 0.90871 0.85149 0.78749 0.75030 0.80254 1.18315 1.19015 1.18181 1.19827 0.98592 0.91595 1.40603 0.89340 1.18839 0.92919 0.94590 0.90564 1.22759 1.03265 0.88117 1.05725 1.66958 1.08395 1.31977 1.11272 1.22211 0.96644 0.96603 1.03935 1.19679 0.95540 0.94902 0.99141 1.18642 0.93360 0.93217 0.95090 1.21309 0.98210 0.97447 1.00526 1.21124 0.93859 0.98600 0.95903 1.21443 1.02794 0.91374 1.05318 1.18787 0.92491 0.85340 0.95523 1.86195 1.39636 1.28185 1.68820 1.23439 0.77615 0.95483 0.88036 0.90629 1.22095 0.99964 0.93673 1.01954 1.21613 0.92642 1.02760 0.98158 1.22249 0.99768 0.96054 1.01431 1.22854 0.84351 0.97552 0.96890 1.87909 1.23704 1.78472 1.44499 1.20448 0.96728 0.98139 1.02286 1.21894 0.98268 0.96645 0.99392 0.89512 0.84461 0.83858 0.86447 0.82831 0.83332 0.89027 0.91031 0.90081 0.88914 0.88005 0.91628 0.91296 0.87543 0.85240 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.83 10.92 21.82 0.24 -40.59 16 2 C 0.04 1.74 5.18 85.25 0.44 2.18 16 3 Si 0.99 36.30 29.59 68.60 2.03 38.33 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.48 -24.96 9.08 23.47 0.21 -24.74 16 8 H 0.09 4.37 7.90 -2.91 -0.02 4.35 16 9 C 0.04 1.93 5.59 -21.21 -0.12 1.81 16 10 C -0.04 -2.01 10.96 85.37 0.94 -1.08 16 11 N -0.48 -24.94 10.32 -192.78 -1.99 -26.93 16 12 C -0.04 -1.79 10.60 85.02 0.90 -0.89 16 13 C -0.09 -4.47 5.88 -20.00 -0.12 -4.59 16 14 C 0.00 -0.09 5.87 -20.06 -0.12 -0.21 16 15 C -0.16 -6.06 9.43 22.49 0.21 -5.85 16 16 C -0.08 -2.37 10.03 22.22 0.22 -2.15 16 17 C -0.19 -5.64 8.62 22.40 0.19 -5.45 16 18 C 0.12 4.14 6.56 22.48 0.15 4.28 16 19 O -0.31 -9.51 10.06 -69.68 -0.70 -10.21 16 20 C 0.25 5.42 2.52 72.01 0.18 5.60 16 21 H 0.08 1.41 7.35 -2.39 -0.02 1.39 16 22 C -0.14 -2.23 5.79 30.68 0.18 -2.06 16 23 C -0.11 -1.11 6.03 30.71 0.19 -0.92 16 24 C -0.16 -1.56 6.14 30.69 0.19 -1.37 16 25 C 0.06 0.79 6.84 72.01 0.49 1.28 16 26 O -0.42 -9.69 8.92 -126.21 -1.13 -10.82 16 27 C -0.16 -6.06 9.37 22.58 0.21 -5.85 16 28 C -0.14 -7.26 8.16 23.14 0.19 -7.07 16 29 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 30 H 0.14 6.69 8.06 -2.91 -0.02 6.66 16 31 H 0.14 6.28 6.20 -2.91 -0.02 6.26 16 32 H 0.12 4.77 6.26 -2.91 -0.02 4.75 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.15 3.55 5.68 -2.91 -0.02 3.53 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.13 4.86 6.21 -2.91 -0.02 4.84 16 44 H 0.13 6.85 4.44 -2.91 -0.01 6.84 16 Total: -1.00 -65.22 357.39 4.02 -61.20 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 1.02 Total: 36.07 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 4.54 Total: -47.05 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.75 Total: -67.53 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.83 Total: -21.03 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -65.22 4.02 -61.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241214171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds